genome.fa.s20.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  115  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32247066--32247117	24	2.2	24	89	0	77	36	3	13	46	1.62
32264727--32264776	15	3.5	14	75	20	50	74	2	16	8	1.15
32264816--32264846	6	5.2	6	92	0	53	80	0	19	0	0.71
32265171--32265215	22	2.0	24	91	8	76	53	0	22	24	1.46
32265540--32265633	36	2.5	35	80	14	100	43	1	23	31	1.61
32274524--32274788	130	2.1	128	89	2	397	15	13	15	55	1.70
32278329--32278463	49	2.8	49	96	0	243	24	22	20	32	1.98
32278329--32278674	50	6.8	50	85	4	288	23	26	19	29	1.98
32282665--32282715	26	2.0	26	96	0	93	27	21	21	29	1.99
32284749--32285094	50	6.8	50	86	4	315	23	26	20	29	1.99
32285430--32285487	30	1.9	30	89	0	89	34	24	3	37	1.72
32289139--32289213	31	2.6	28	78	17	91	42	8	16	33	1.77
32289573--32289598	10	2.6	10	100	0	52	46	0	0	53	1.00
32289616--32289665	26	1.9	26	87	0	73	44	2	0	54	1.11
32289767--32289855	46	2.0	46	84	8	121	35	24	6	32	1.82
32290025--32290056	16	2.0	16	93	0	55	34	0	15	50	1.45
32295309--32295404	39	2.5	39	89	0	156	28	18	15	37	1.92
32295417--32295471	16	3.4	16	74	18	60	21	30	3	43	1.70
32295414--32295474	32	1.9	32	96	0	113	24	29	3	42	1.70
32296814--32296857	16	2.9	15	76	6	52	27	6	6	59	1.49
32304620--32304727	37	3.1	37	76	19	117	40	0	3	54	1.24
32304620--32304680	11	5.2	12	74	14	56	39	0	4	55	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32304620--32304695	12	6.8	11	72	19	52	40	0	3	55	1.18
32304623--32304727	20	5.6	19	71	18	62	40	0	3	55	1.25
32311184--32311304	62	2.0	62	96	0	224	29	26	9	33	1.89
32314987--32315088	20	4.9	21	71	25	58	73	2	17	5	1.16
32315052--32315094	5	8.4	5	80	14	52	79	0	18	2	0.85
32314985--32315093	45	2.4	43	77	11	112	74	2	17	5	1.13
32315041--32315093	13	3.6	14	82	12	54	79	0	16	3	0.88
32315052--32315093	15	2.7	16	85	7	68	80	0	16	2	0.81
32324149--32324179	16	1.9	16	93	0	53	9	9	9	70	1.33
32330159--32330206	25	1.9	24	83	8	60	62	6	2	29	1.31
32345088--32345143	11	4.9	12	85	14	75	44	0	32	23	1.53
32345088--32345151	22	2.8	24	77	22	82	43	0	31	25	1.55
32345089--32345151	11	5.5	12	77	19	55	42	0	31	25	1.55
32357368--32357425	29	2.0	30	89	3	91	18	50	1	29	1.57
32357500--32357802	163	1.9	165	88	3	461	36	23	1	38	1.63
32362757--32362892	60	2.3	58	82	6	159	47	0	2	49	1.22
32362994--32363079	46	1.9	45	86	13	124	36	25	5	32	1.80
32367154--32367319	80	2.1	80	98	1	323	30	15	20	33	1.94
32367793--32368152	47	7.3	48	78	11	302	33	7	27	31	1.84
32367834--32367968	63	2.1	64	86	5	195	35	5	25	33	1.79
32367795--32368015	110	2.0	111	89	2	338	33	5	27	33	1.81
32367898--32368203	47	6.5	47	89	2	438	32	8	29	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32367918--32368203	140	2.0	141	89	0	430	32	9	29	29	1.88
32368321--32368399	37	2.1	37	86	4	106	25	18	29	26	1.98
32382456--32383189	47	15.2	47	92	4	1010	28	29	9	32	1.88
32382456--32383189	143	5.1	141	92	4	1028	28	29	9	32	1.88
32383056--32383170	57	2.0	57	98	0	221	29	29	6	33	1.84
32383060--32383150	27	3.3	27	67	24	80	32	28	4	34	1.77
32385063--32385182	56	2.1	56	98	0	231	22	23	9	45	1.81
32392528--32392559	9	3.6	9	91	0	55	12	15	12	59	1.61
32402553--32402797	39	6.3	39	81	0	292	18	27	20	33	1.96
32402633--32402765	20	6.8	20	66	10	78	17	30	21	31	1.96
32402635--32402691	19	2.9	20	70	15	55	17	31	22	28	1.97
32406256--32406433	42	4.2	43	71	8	141	35	26	14	23	1.93
32406204--32406350	42	3.5	41	72	9	143	35	25	16	23	1.95
32406198--32406382	85	2.2	84	89	0	271	36	23	16	23	1.94
32406204--32406433	85	2.7	85	83	3	232	36	25	15	23	1.94
32406797--32406858	30	2.1	29	84	3	79	32	20	4	41	1.74
32412058--32412247	85	2.2	84	78	8	188	36	22	15	26	1.93
32412144--32412282	42	3.3	42	76	9	129	36	23	14	25	1.93
32412259--32412311	26	2.0	26	88	0	79	24	33	22	18	1.97
32418557--32418633	14	5.0	15	71	20	52	42	15	9	32	1.78
32418573--32418612	20	2.0	20	90	0	62	50	12	10	27	1.72
32418561--32418627	34	1.9	35	90	3	109	46	13	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32418596--32418635	14	2.9	14	84	0	53	42	17	7	32	1.77
32449415--32449456	16	2.5	17	88	11	61	38	0	4	57	1.20
32462217--32462428	42	5.1	42	87	0	228	31	21	20	26	1.98
32462488--32462521	14	2.4	14	95	0	59	58	20	8	11	1.59
32462745--32462815	21	3.4	21	88	3	99	2	45	18	33	1.64
32468278--32468683	51	7.9	51	93	3	676	33	0	19	46	1.53
32468244--32468707	18	27.0	18	64	31	129	33	0	20	45	1.53
32468801--32468877	24	3.5	22	77	10	70	58	2	0	38	1.12
32469136--32469177	13	3.2	13	86	0	57	47	2	9	40	1.49
32469149--32469408	40	6.6	40	75	17	242	43	3	10	43	1.53
32469182--32469420	17	12.6	17	69	23	115	41	2	10	45	1.53
32469222--32469460	57	4.2	57	94	2	417	41	2	10	45	1.50
32469222--32469460	115	2.1	114	96	2	435	41	2	10	45	1.50
32469394--32469469	40	1.9	40	91	5	127	44	1	7	46	1.41
32469222--32469460	17	12.6	17	71	24	126	41	2	10	45	1.50
32474488--32474634	40	3.7	39	78	13	147	19	28	17	34	1.94
32474501--32474617	40	2.9	40	87	0	162	19	28	15	36	1.92
32474302--32474536	111	2.1	112	96	1	429	25	26	19	28	1.98
32484378--32484420	16	2.7	16	92	0	68	27	32	9	30	1.88
32491711--32491756	17	2.9	16	75	18	51	47	2	2	47	1.26
32493803--32493839	19	1.9	19	88	0	56	43	5	0	51	1.24
32496899--32496955	20	2.8	20	79	15	62	61	1	1	35	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32496847--32496956	21	5.3	20	72	17	68	56	2	3	37	1.31
32496912--32496971	30	2.0	30	83	6	77	63	1	0	35	1.05
32496847--32496962	12	9.4	12	67	23	55	56	2	3	37	1.30
32497246--32497293	21	2.1	23	88	11	73	62	0	2	35	1.07
32497232--32497295	21	3.0	21	69	28	53	57	1	3	37	1.24
32497758--32497803	20	2.4	19	81	3	56	39	2	58	0	1.10
32497888--32497927	8	5.2	8	80	19	50	20	0	2	77	0.88
32499158--32499398	127	1.9	128	84	5	324	30	20	17	31	1.96
32499295--32499697	73	5.5	73	85	4	474	32	22	17	28	1.96
32499295--32499675	145	2.6	145	83	4	467	32	23	16	27	1.96
32499746--32499883	55	2.5	55	82	10	169	35	16	16	31	1.92
32511400--32511662	40	6.6	40	87	3	316	24	20	28	26	1.99
32511439--32511697	80	3.3	80	84	3	238	25	20	28	25	1.99
32518905--32519167	40	6.6	40	87	3	316	24	20	28	26	1.99
32518944--32519202	80	3.3	80	84	3	238	25	20	28	25	1.99
32523247--32523374	12	10.5	12	70	22	65	57	2	3	37	1.28
32523246--32523370	42	3.0	41	80	10	103	56	3	3	36	1.31
32523653--32523700	21	2.1	23	88	11	73	62	0	2	35	1.07
32523639--32523702	21	3.0	21	69	28	53	57	1	3	37	1.24
32524165--32524210	20	2.4	19	81	3	56	39	2	58	0	1.10
32525488--32525531	23	2.0	23	86	4	63	20	0	25	54	1.45
32526960--32527003	23	1.9	23	100	0	88	20	4	27	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32527273--32527324	25	2.1	24	83	16	63	46	11	3	38	1.59
32535631--32535713	41	2.0	41	92	0	139	37	16	18	27	1.92
32545390--32545594	27	7.6	27	85	5	252	26	15	28	30	1.96
32545391--32545594	109	1.9	108	88	3	311	25	15	28	30	1.96
32548290--32548334	16	2.9	17	84	15	62	48	4	0	46	1.22
32548497--32548623	63	2.0	64	83	4	159	26	18	5	48	1.70
32555869--32555958	44	2.0	44	93	0	153	20	24	10	45	1.81
32571864--32571898	10	3.5	10	88	0	52	57	5	5	31	1.46
32577377--32577414	18	2.1	18	90	0	58	31	5	18	44	1.72
32590098--32590316	39	5.6	39	88	4	325	44	19	3	32	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189