genome.fa.s20.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  108  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30565065--30565098	17	2.0	17	94	0	59	32	0	0	67	0.91
30565659--30565683	12	2.1	12	100	0	50	16	24	36	24	1.94
30565714--30565744	16	1.9	16	100	0	62	32	3	19	45	1.66
30565976--30566017	16	2.4	18	81	18	54	40	23	7	28	1.81
30571239--30571318	38	2.1	38	90	0	124	42	18	8	30	1.81
30571773--30571821	9	5.6	9	80	9	57	36	0	2	61	1.08
30571773--30571824	26	2.0	25	88	3	77	40	0	1	57	1.10
30571843--30571881	20	2.1	18	90	9	60	30	2	2	64	1.21
30572361--30572388	2	14.0	2	100	0	56	50	0	0	50	1.00
30602808--30602843	18	1.9	19	88	5	56	55	11	0	33	1.35
30603517--30603561	18	2.6	18	89	3	65	17	48	20	13	1.80
30619385--30619479	45	2.1	45	80	7	104	26	23	18	31	1.98
30623758--30623798	20	2.0	21	95	4	75	24	19	36	19	1.95
30625958--30626169	40	5.3	40	86	3	259	23	20	27	28	1.99
30631878--30632153	27	10.2	26	81	5	268	43	17	19	19	1.88
30631878--30632153	54	5.1	55	86	3	321	43	17	19	19	1.88
30631878--30632153	81	3.4	81	84	5	328	43	17	19	19	1.88
30644946--30645187	50	4.8	50	90	1	342	21	30	21	25	1.98
30648079--30648355	27	10.3	27	82	0	313	44	18	17	19	1.87
30648079--30648352	81	3.4	81	85	3	345	44	18	17	19	1.87
30648684--30648773	30	3.0	30	83	4	112	23	25	23	27	2.00
30650482--30650529	24	2.0	23	84	11	62	50	0	4	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30663563--30663594	13	2.5	13	100	0	64	40	6	6	46	1.54
30663634--30663894	39	6.7	39	86	0	308	17	30	18	32	1.95
30663774--30663874	19	5.2	19	69	4	67	13	31	18	35	1.90
30663634--30663874	117	2.1	116	89	2	367	17	31	19	32	1.94
30665201--30665469	45	6.0	45	92	0	421	30	15	21	31	1.95
30665481--30665594	44	2.6	44	88	0	174	34	22	20	22	1.97
30667022--30667072	3	16.7	3	76	11	50	33	3	1	60	1.26
30667022--30667072	21	2.4	21	86	3	66	33	3	1	60	1.26
30667301--30667338	17	2.2	18	85	4	51	28	2	2	65	1.19
30669874--30669968	36	2.6	35	77	9	93	22	22	25	30	1.99
30679574--30679623	17	2.9	17	85	5	57	60	0	2	38	1.09
30680005--30680029	7	3.6	7	100	0	50	40	0	0	60	0.97
30680054--30680244	19	9.4	19	71	18	102	33	0	12	53	1.39
30680054--30680140	41	2.0	47	76	14	71	34	0	12	52	1.39
30680016--30680244	121	1.9	122	84	10	308	33	0	12	54	1.41
30680204--30680529	27	13.8	25	73	20	253	32	0	13	53	1.46
30680060--30680575	115	4.5	115	77	15	438	32	0	13	53	1.44
30680183--30680333	19	6.9	19	71	25	86	30	0	13	55	1.43
30680194--30680434	94	2.5	96	93	4	425	32	0	12	53	1.44
30680336--30680576	19	12.6	19	66	25	109	32	0	14	52	1.47
30680194--30680440	49	5.2	49	88	5	364	32	0	12	53	1.45
30680404--30680571	49	3.6	46	85	8	196	32	0	14	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30680492--30680554	8	7.4	8	72	13	54	34	0	17	47	1.48
30680404--30680581	95	1.9	95	85	5	252	32	0	14	52	1.45
30683737--30683781	22	2.1	21	91	4	72	0	33	2	64	1.06
30683739--30683790	22	2.8	18	75	25	54	0	36	1	61	1.07
30683847--30683922	27	2.8	27	92	4	118	23	36	19	19	1.95
30693864--30693905	6	7.0	6	94	0	66	50	0	16	33	1.46
30698023--30698084	28	2.1	30	85	8	83	66	3	3	27	1.23
30700954--30701004	24	2.2	23	82	3	57	27	5	9	56	1.54
30701705--30702046	116	2.9	116	87	1	472	28	15	21	34	1.94
30706525--30706553	14	2.1	14	93	6	51	34	0	10	55	1.34
30707366--30707617	43	5.9	43	79	1	272	24	15	29	29	1.96
30707368--30707617	129	1.9	129	84	3	333	24	16	30	29	1.96
30710690--30710912	95	2.4	96	82	3	263	40	3	16	39	1.64
30710991--30711084	48	2.0	47	95	2	170	42	8	9	39	1.68
30711660--30711702	18	2.4	18	88	0	59	44	9	27	18	1.80
30713541--30713593	11	5.0	10	84	13	63	49	1	28	20	1.60
30713541--30713593	22	2.5	21	85	11	72	49	1	28	20	1.60
30713742--30713817	40	1.9	40	83	0	98	21	27	26	25	1.99
30714549--30714615	34	1.9	35	88	8	102	46	11	8	32	1.72
30714584--30714623	14	2.9	14	82	14	55	42	12	7	37	1.71
30718214--30718250	18	2.1	18	90	10	58	24	5	29	40	1.77
30722056--30722099	20	2.2	20	88	8	63	68	0	27	4	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30726725--30726789	9	6.9	9	74	13	51	60	4	1	33	1.27
30727385--30727447	29	2.1	30	85	8	85	36	1	0	61	1.05
30727354--30727489	40	3.4	40	88	6	204	36	0	0	61	1.06
30727374--30727479	11	10.4	11	76	15	95	37	0	0	61	1.03
30727801--30727859	32	1.9	30	86	6	82	30	1	6	61	1.32
30727886--30727939	28	2.0	27	85	3	72	31	1	1	64	1.14
30727922--30727989	8	7.8	8	77	19	57	27	4	1	66	1.20
30733640--30733665	5	5.2	5	100	0	52	19	0	38	42	1.51
30741193--30741317	45	2.8	44	86	3	162	42	13	20	23	1.88
30742246--30742340	48	2.0	48	89	0	145	29	30	20	20	1.97
30743665--30743724	25	2.4	25	88	0	84	36	20	25	18	1.94
30751488--30751673	40	4.7	40	88	5	243	26	27	22	24	2.00
30764014--30764047	16	2.1	16	100	0	68	38	0	5	55	1.24
30768652--30768710	31	1.9	31	85	0	82	22	16	35	25	1.95
30771245--30771311	33	2.0	33	97	0	125	23	16	14	44	1.85
30773705--30773765	30	2.0	30	96	0	113	29	3	14	52	1.58
30777537--30777610	36	2.1	36	82	5	87	28	18	12	40	1.87
30786153--30786209	20	2.8	20	91	0	87	24	29	0	45	1.53
30786254--30786294	21	2.0	21	90	0	64	43	17	9	29	1.80
30790841--30790898	29	2.0	29	100	0	116	24	17	17	41	1.90
30793750--30793864	54	2.1	54	84	6	144	43	20	16	19	1.88
30793758--30793865	27	4.0	27	81	9	130	42	20	16	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30794044--30794087	12	3.5	12	77	22	54	20	25	20	34	1.97
30802951--30803000	25	1.9	27	92	8	86	54	4	26	16	1.59
30803464--30804568	554	2.0	550	88	3	1639	36	14	11	36	1.83
30818428--30818605	27	6.6	26	82	6	178	26	15	28	29	1.96
30818429--30818584	82	1.9	81	86	3	224	26	16	28	28	1.97
30818425--30818605	82	2.2	81	82	2	220	27	16	27	29	1.97
30818510--30818616	27	3.9	27	85	1	70	26	14	28	30	1.95
30826516--30826694	27	6.6	27	82	7	184	27	15	27	29	1.96
30826518--30826673	82	1.9	81	86	3	224	27	15	28	28	1.96
30826514--30826694	82	2.2	81	81	2	220	27	14	27	29	1.96
30829608--30829663	27	2.1	27	89	0	85	39	8	21	30	1.84
30834592--30834648	10	5.2	11	74	21	57	21	35	0	43	1.52
30834609--30834664	22	2.5	22	97	2	103	28	32	0	39	1.57
30834636--30834739	51	2.0	51	98	0	199	29	26	0	43	1.55
30835884--30835908	7	3.6	7	100	0	50	28	0	12	60	1.32
30836557--30836591	18	1.9	18	94	0	61	25	31	8	34	1.86
30837081--30837544	23	18.9	23	74	18	327	46	24	0	29	1.53
30837145--30837190	22	2.2	20	88	11	67	45	28	0	26	1.54
30837101--30837536	74	5.8	74	90	4	646	46	24	0	29	1.53
30837219--30837264	22	2.2	20	88	11	67	45	28	0	26	1.54
30837270--30837333	21	3.0	20	84	13	76	45	26	0	28	1.54
30837182--30837544	52	7.3	51	73	19	297	46	23	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30841564--30841636	11	7.1	10	74	11	51	53	1	1	43	1.17
30841570--30841646	33	2.5	29	80	12	82	55	1	2	40	1.22
30841592--30841655	21	3.0	21	77	15	69	54	0	1	43	1.09
30841565--30841655	42	2.1	42	82	9	105	51	1	2	45	1.20
30841564--30841637	10	7.3	10	72	15	55	52	1	1	44	1.17
30841565--30841678	43	2.7	40	75	15	104	50	1	1	45	1.22
30843508--30843551	19	2.4	19	84	3	63	34	2	0	63	1.07
30843511--30843552	18	2.3	18	88	8	59	35	2	0	61	1.09
30853504--30853697	50	3.9	50	82	2	212	27	22	28	21	1.99
30857913--30858010	40	2.4	42	77	6	110	22	25	30	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199