genome.fa.s20.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  195  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56728158--56728262	42	2.3	43	76	18	108	58	11	0	29	1.40
56728150--56728240	17	5.2	19	69	27	60	54	13	2	29	1.50
56728193--56728257	22	3.0	22	72	21	66	58	10	1	29	1.41
56728223--56728408	57	3.2	59	76	16	203	52	10	3	33	1.51
56728279--56728354	13	5.5	13	71	20	64	59	11	1	27	1.41
56728334--56728373	19	2.2	18	90	4	62	62	10	0	27	1.27
56731830--56731916	30	2.9	31	75	17	101	32	13	20	33	1.92
56737763--56737795	17	1.9	17	93	0	57	27	3	21	48	1.64
56742289--56742331	11	3.8	11	80	17	52	30	2	2	65	1.18
56742292--56742335	23	1.9	23	90	0	70	31	2	4	61	1.28
56743088--56743184	20	4.8	20	71	8	81	45	20	23	10	1.82
56748455--56748605	56	2.7	56	91	0	239	28	23	10	37	1.88
56755471--56755519	20	2.4	21	76	10	57	65	0	24	10	1.23
56755606--56755654	21	2.4	20	75	3	53	67	2	28	2	1.13
56755967--56756054	12	7.4	12	72	11	65	38	2	2	56	1.24
56755967--56756005	13	3.1	13	92	7	62	41	2	0	56	1.13
56765340--56765377	18	2.0	20	90	10	62	28	0	13	57	1.36
56766828--56766890	23	2.7	23	87	4	92	20	20	17	41	1.91
56767107--56767136	6	5.0	6	100	0	60	50	0	16	33	1.46
56771228--56771252	13	1.9	13	100	0	50	60	0	0	40	0.97
56773260--56773416	43	3.7	42	82	3	181	27	29	18	24	1.98
56776781--56776809	8	3.8	8	95	4	51	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56776941--56776992	21	2.5	21	78	6	61	32	40	0	26	1.57
56776962--56777092	61	2.1	61	87	2	181	44	24	0	30	1.59
56777663--56777819	41	3.9	41	83	3	174	30	22	21	25	1.99
56778875--56779074	107	1.9	107	92	0	337	32	15	25	26	1.95
56779896--56779946	19	2.9	18	82	8	52	41	3	15	39	1.66
56779896--56779944	18	2.8	17	82	11	55	40	4	16	38	1.67
56788321--56788478	84	1.9	84	84	7	214	21	18	29	31	1.97
56788309--56788478	43	4.0	43	79	13	199	21	17	28	31	1.96
56788628--56788659	16	1.9	17	93	6	57	40	0	21	37	1.54
56791473--56791510	19	2.0	19	100	0	76	42	0	21	36	1.53
56801434--56801490	25	2.3	25	85	8	73	17	24	22	35	1.95
56806923--56807331	44	9.1	44	70	12	179	28	21	16	33	1.95
56815138--56815594	236	1.9	237	88	3	686	26	23	17	31	1.97
56817633--56817674	12	3.3	12	81	18	50	71	0	2	26	0.98
56824974--56825002	15	1.9	15	100	0	58	62	6	10	20	1.50
56824949--56825207	110	2.4	110	100	0	518	55	4	8	30	1.51
56825084--56825112	15	1.9	15	100	0	58	62	6	10	20	1.50
56826571--56826680	33	3.3	33	85	0	166	46	15	7	30	1.73
56829707--56830570	120	7.2	120	98	0	1638	44	2	5	47	1.40
56830532--56830573	15	2.7	16	82	14	52	45	0	2	52	1.13
56830523--56830564	15	2.9	15	82	10	52	47	0	0	52	1.00
56830507--56830821	155	2.0	157	93	1	544	47	5	3	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56830873--56830963	45	2.0	45	85	2	121	37	28	6	27	1.82
56830944--56831012	16	4.2	16	88	3	111	36	36	1	26	1.66
56830944--56831012	33	2.1	32	91	2	111	36	36	1	26	1.66
56831331--56831378	10	4.7	10	87	5	60	66	0	0	33	0.92
56831327--56831378	21	2.6	19	77	16	61	69	0	0	30	0.89
56833328--56833366	18	2.2	18	85	0	51	38	7	17	35	1.79
56833337--56833372	18	2.0	18	94	0	63	27	13	22	36	1.92
56833560--56833584	13	1.9	13	100	0	50	32	48	4	16	1.64
56833686--56833752	9	7.4	9	86	0	98	23	11	22	41	1.87
56833690--56833752	27	2.3	27	94	0	108	22	12	23	41	1.88
56835864--56835890	13	2.1	13	100	0	54	29	0	22	48	1.51
56836979--56837137	43	3.7	42	78	10	171	24	18	25	30	1.98
56841575--56841616	21	2.0	21	100	0	84	33	9	33	23	1.87
56841663--56841694	12	2.6	13	85	14	50	37	0	6	56	1.25
56844846--56844881	17	2.1	18	89	5	56	30	2	0	66	1.06
56845211--56845279	16	4.2	16	96	3	129	24	0	37	37	1.56
56845211--56845279	33	2.1	32	97	2	129	24	0	37	37	1.56
56845260--56845350	45	2.0	45	85	2	121	27	6	28	37	1.82
56845413--56845718	157	1.9	157	95	1	551	43	2	5	48	1.39
56845652--56845693	15	2.7	16	82	14	52	52	2	0	45	1.13
56845661--56845702	15	2.9	15	82	10	52	52	0	0	47	1.00
56845655--56845947	120	2.4	121	93	2	493	49	4	3	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56845781--56845822	15	2.9	15	82	10	52	52	0	0	47	1.00
56845702--56845909	66	3.3	64	66	22	172	48	6	3	41	1.46
56857814--56857838	13	1.9	13	100	0	50	8	8	16	68	1.38
56863936--56863972	9	4.1	9	92	0	65	45	13	10	29	1.77
56864975--56865000	5	5.2	5	100	0	52	19	19	19	42	1.90
56868435--56868483	20	2.5	20	83	6	64	40	14	22	22	1.90
56868840--56868878	9	4.3	9	86	0	60	30	7	12	48	1.69
56872633--56872682	16	3.0	17	76	5	57	44	0	0	56	0.99
56872650--56872688	20	1.9	21	94	5	71	48	0	0	51	1.00
56874512--56874551	19	2.1	19	85	4	53	60	12	17	10	1.59
56878085--56878601	176	2.8	183	86	7	687	26	13	21	37	1.91
56878234--56878608	194	1.9	193	89	3	585	26	13	21	37	1.91
56880962--56881171	92	2.3	92	78	9	241	23	15	11	49	1.78
56880986--56881163	93	1.9	90	85	7	243	24	16	11	47	1.80
56885555--56885588	18	1.9	18	88	5	52	29	0	5	64	1.17
56885596--56885675	31	2.6	31	74	21	78	62	3	0	33	1.13
56885618--56885659	15	2.7	16	81	7	50	61	0	0	38	0.96
56885876--56885911	18	1.9	19	88	5	56	41	8	2	47	1.48
56889599--56889626	2	14.0	2	100	0	56	50	0	50	0	1.00
56892515--56892544	13	2.3	13	100	0	60	60	0	0	40	0.97
56897161--56897198	20	1.9	20	84	10	51	31	13	0	55	1.38
56897536--56897578	19	2.2	20	84	12	54	0	23	2	74	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56897691--56897725	15	2.2	16	90	5	54	51	0	0	48	1.00
56912454--56912578	11	12.4	11	69	25	73	37	2	0	60	1.10
56912437--56912566	38	3.3	39	91	4	226	34	2	0	63	1.07
56912541--56912579	20	2.0	20	94	0	69	35	2	0	61	1.10
56914186--56914238	21	2.5	21	75	0	52	37	18	28	15	1.91
56914186--56914307	42	2.9	42	79	4	129	37	15	26	20	1.92
56918447--56918471	13	1.9	13	100	0	50	36	16	0	48	1.46
56919325--56919377	20	2.7	20	71	11	54	39	22	5	32	1.78
56919549--56919711	22	7.0	22	80	8	123	34	20	23	20	1.96
56919633--56919688	24	2.4	24	87	3	78	39	19	23	17	1.92
56919890--56919983	49	1.9	49	97	0	179	40	20	2	37	1.64
56919933--56920229	67	4.4	67	94	0	531	41	17	3	37	1.65
56920092--56920124	17	1.9	17	93	0	57	33	30	3	33	1.73
56924422--56924482	30	2.0	30	90	0	95	39	29	6	24	1.80
56926363--56926430	21	3.2	21	76	0	73	14	27	17	39	1.89
56926370--56926451	42	2.0	42	85	0	110	17	26	15	40	1.89
56944218--56944274	30	1.9	30	82	7	71	40	1	17	40	1.60
56951402--56951427	3	8.7	3	100	0	52	34	0	0	65	0.93
56958622--56958668	17	2.7	17	80	3	58	57	23	4	14	1.55
56967394--56967428	3	11.7	3	100	0	70	68	0	0	31	0.90
56971247--56971272	4	6.5	4	100	0	52	23	0	0	76	0.78
56977720--56977750	12	2.6	12	100	0	62	19	25	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56983601--56983629	15	1.9	15	100	0	58	44	6	13	34	1.71
57003782--57003847	34	1.9	34	96	0	123	45	0	15	39	1.46
57003791--57003846	17	3.3	17	70	9	60	46	0	14	39	1.44
57008023--57008077	22	2.5	22	82	8	58	58	9	0	32	1.30
57013344--57013389	24	1.9	24	86	0	65	21	30	15	32	1.94
57013489--57013741	25	10.1	25	69	10	88	20	23	20	34	1.96
57013489--57013593	26	4.2	26	76	10	94	20	23	21	33	1.97
57013550--57013666	49	2.4	50	84	5	141	21	21	20	36	1.95
57021113--57021152	13	3.0	13	85	3	53	27	0	2	70	1.01
57025593--57025648	23	2.6	22	80	8	62	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199