genome.fa.s20.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  37  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11410857--11410904	24	2.0	24	83	0	60	62	8	4	25	1.41
11413135--11413174	9	4.4	9	90	0	62	45	20	7	27	1.78
11414495--11414572	39	2.0	39	100	0	156	23	12	25	38	1.90
11418796--11418831	14	2.7	13	87	8	54	25	0	2	72	0.98
11432407--11432442	18	2.0	18	100	0	72	44	27	16	11	1.82
11439390--11439524	67	2.0	67	85	0	180	35	8	18	37	1.82
11439509--11439573	34	1.9	33	84	9	87	36	7	13	41	1.74
11439554--11439642	33	2.7	31	80	13	99	26	8	15	48	1.75
11439654--11439696	18	2.4	18	100	0	86	46	0	0	53	1.00
11439658--11439701	18	2.6	16	83	13	61	47	0	0	52	1.00
11447982--11448023	22	1.9	22	85	9	59	40	16	16	26	1.90
11450624--11450863	127	1.9	126	82	9	301	33	12	17	36	1.87
11452853--11453805	44	22.6	43	74	16	453	22	20	23	33	1.97
11452894--11453807	84	10.9	84	92	2	1403	22	21	23	33	1.97
11453953--11454178	88	2.6	90	82	6	268	24	26	22	26	2.00
11466754--11466813	30	2.0	31	86	3	86	43	8	5	43	1.56
11476077--11476165	37	2.4	37	92	0	151	42	14	7	34	1.75
11476208--11476283	33	2.3	33	97	0	143	43	15	5	35	1.70
11477340--11477611	92	3.0	89	81	10	289	45	3	3	47	1.35
11477476--11477523	24	1.9	25	87	8	71	47	0	2	50	1.12
11477688--11477729	15	2.7	16	82	14	52	45	0	2	52	1.13
11477679--11477720	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11477663--11477978	156	2.0	157	95	0	571	47	5	3	43	1.42
11478030--11478121	45	2.1	44	83	2	112	35	28	5	30	1.80
11478101--11478136	16	2.2	16	95	0	63	38	33	0	27	1.57
11481199--11481242	21	2.1	21	100	0	88	29	13	38	18	1.89
11491006--11491044	16	2.5	16	79	4	53	35	0	0	64	0.94
11491241--11491265	12	2.1	12	100	0	50	12	32	16	40	1.84
11492618--11492656	13	3.2	13	79	20	57	43	0	0	56	0.99
11495738--11496312	285	2.0	285	98	0	1123	25	14	26	34	1.94
11499915--11499959	20	2.3	19	88	3	63	75	2	20	2	1.01
11500870--11500978	37	2.8	39	77	9	114	25	18	23	32	1.97
11503444--11503526	25	3.2	25	63	24	62	40	26	14	18	1.88
11504900--11504998	23	4.3	23	89	0	162	31	24	21	23	1.98
11509729--11509763	12	2.9	12	91	0	61	14	34	25	25	1.94
11510568--11510658	45	2.0	45	97	0	173	34	24	13	28	1.93
11512321--11512419	23	4.3	23	89	0	162	31	24	21	23	1.98
11522626--11522689	31	2.1	31	88	2	94	39	6	15	39	1.73
11536670--11536756	31	2.9	30	82	3	104	33	10	18	37	1.85
11538009--11538052	18	2.4	19	88	3	63	59	2	2	36	1.23
11538575--11538631	16	3.6	16	95	0	87	29	0	36	33	1.58
11538877--11538911	18	2.0	17	88	5	52	54	0	0	45	0.99
11538764--11539077	154	2.0	156	95	1	560	44	3	5	46	1.42
11539011--11539052	15	2.7	16	82	14	52	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11539020--11539061	15	2.9	15	82	10	52	52	0	0	47	1.00
11539009--11539305	120	2.5	121	90	6	462	50	5	2	41	1.39
11539130--11539181	15	3.6	15	80	12	56	53	1	0	44	1.11
11539107--11539197	44	2.1	43	81	6	103	53	3	2	40	1.29
11539049--11539232	59	3.1	59	65	21	148	49	7	2	41	1.42
11539266--11539304	17	2.5	15	80	15	51	51	0	5	43	1.24
11539271--11539304	17	2.0	17	94	0	59	50	0	5	44	1.26
11539337--11539531	93	2.1	92	88	4	286	47	4	4	44	1.41
11546525--11546598	11	6.7	11	73	23	59	70	2	22	4	1.17
11548264--11548311	24	2.0	24	83	4	60	27	10	10	52	1.68
11555198--11555222	9	2.8	9	100	0	50	44	0	0	56	0.99
11555476--11555538	31	2.0	31	84	6	83	39	14	3	42	1.61
11557370--11557409	21	2.0	20	90	5	62	35	27	5	32	1.79
11559410--11559477	10	6.8	10	75	14	52	52	0	1	45	1.09
11559400--11559477	11	7.4	11	76	17	67	53	0	2	43	1.14
11559417--11559530	43	2.7	42	90	4	169	59	0	1	38	1.08
11560458--11560516	25	2.3	27	80	16	72	45	5	22	27	1.73
11563008--11563113	42	2.5	42	95	1	185	27	28	16	27	1.97
11563556--11563609	28	1.9	28	85	7	74	27	25	0	46	1.53
11565317--11565357	17	2.5	17	88	7	59	39	2	14	43	1.59
11565593--11565802	41	5.1	41	92	0	339	28	19	28	24	1.98
11566013--11566091	37	2.1	37	88	0	113	31	7	24	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11573243--11573283	17	2.5	17	88	7	59	39	2	14	43	1.59
11573517--11573726	41	5.1	41	93	0	357	28	20	28	22	1.99
11573915--11574024	37	3.3	34	79	14	106	28	10	27	33	1.90
11573935--11574024	37	2.5	37	85	7	116	28	10	25	35	1.88
11584882--11584946	30	2.2	30	91	0	112	27	29	3	40	1.71
11586929--11587010	41	2.0	41	100	0	164	36	12	21	29	1.90
11590979--11591083	43	2.4	43	88	3	149	35	23	19	21	1.96
11590979--11591105	43	3.0	42	86	5	148	35	23	18	22	1.96
11592917--11592941	11	2.3	11	100	0	50	28	0	0	72	0.86
11595856--11596209	186	1.9	186	88	2	532	30	17	18	33	1.94
11596042--11596308	125	2.1	125	87	2	383	29	16	17	35	1.93
11596369--11596485	34	3.5	33	78	12	123	49	11	1	36	1.50
11596539--11596573	15	2.3	15	90	0	52	57	34	0	8	1.29
11597369--11597402	17	1.9	18	88	5	52	64	2	2	29	1.22
11599472--11599508	20	1.9	20	88	5	58	32	0	2	64	1.07
11602259--11602318	30	1.9	32	83	6	79	46	1	3	48	1.28
11602325--11602412	26	3.4	25	78	7	79	71	3	21	3	1.16
11602374--11602416	15	2.8	14	80	19	50	76	0	23	0	0.78
11602325--11602412	25	3.4	25	81	4	95	71	3	21	3	1.16
11603116--11603140	11	2.3	11	100	0	50	36	0	8	56	1.29
11603547--11603586	20	2.0	20	95	0	71	42	10	20	27	1.83
11604568--11604706	58	2.4	58	86	2	181	38	8	28	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11610016--11610077	30	2.1	30	100	0	124	22	9	19	48	1.78
11612236--11612274	17	2.2	18	86	4	53	28	7	17	46	1.76
11616319--11616387	33	2.1	33	89	5	104	33	10	7	49	1.64
11617118--11617148	13	2.3	14	94	5	55	22	16	0	61	1.34
11628728--11628818	33	2.8	33	74	5	85	12	5	13	69	1.35
11628785--11628814	14	2.1	14	93	0	51	16	0	10	73	1.09
11629445--11629505	31	2.0	31	90	0	95	40	6	6	45	1.56
11637141--11637178	19	2.0	19	90	10	60	44	0	0	55	0.99
11647253--11647285	17	2.1	17	88	11	52	27	0	0	72	0.85
11647797--11647850	21	2.6	20	80	8	54	24	1	33	40	1.66
11660638--11660689	26	2.0	26	92	0	86	21	21	17	40	1.91
11662783--11662837	27	2.0	28	82	3	67	25	10	12	50	1.73
11673578--11673607	4	7.5	4	92	0	51	50	23	0	26	1.50
11674111--11674178	31	2.2	31	81	0	82	33	17	7	41	1.77
11683240--11683291	2	26.0	2	100	0	104	0	50	0	50	1.00
11684164--11684228	31	2.1	31	85	5	87	41	10	16	30	1.83
11686067--11686153	40	2.2	40	89	4	131	54	10	13	21	1.69
11686389--11686419	16	1.9	16	93	0	53	67	0	29	3	1.06
11698603--11698768	86	1.9	87	93	1	289	24	12	21	42	1.86
11703225--11703270	22	2.1	22	100	0	92	47	8	21	21	1.77
11713180--11713282	51	2.0	51	100	0	206	33	18	25	23	1.97
11715409--11715467	29	2.0	29	96	0	109	32	20	33	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11718327--11718386	21	2.8	21	78	17	61	50	8	3	38	1.49
11718963--11719377	138	3.0	138	98	0	794	25	22	20	31	1.98
11723020--11723058	18	2.2	17	86	13	53	33	0	20	46	1.51
11723284--11723381	23	4.3	23	90	2	162	20	21	26	31	1.98
11723286--11723374	45	2.0	45	95	0	160	19	22	26	31	1.97
11730390--11730428	18	2.2	17	86	13	53	33	0	20	46	1.51
11730655--11730773	23	5.3	23	92	2	170	19	21	26	31	1.97
11730656--11730766	22	5.0	22	93	2	168	18	22	27	31	1.97
11733757--11733788	16	2.0	16	100	0	64	12	12	25	50	1.75
11733902--11734165	45	5.9	45	93	0	420	39	15	19	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199