genome.fa.s20.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  17  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5679201--5679804	152	4.0	151	86	5	786	51	8	9	30	1.63
5679856--5679899	21	2.1	21	95	0	79	36	9	15	38	1.80
5679855--5679910	21	2.8	19	84	10	76	35	8	17	37	1.82
5679889--5679933	23	2.0	23	82	4	56	37	2	20	40	1.65
5679899--5679943	23	2.0	23	82	4	56	35	2	15	46	1.58
5680365--5680404	3	13.3	3	84	10	55	32	0	0	67	0.91
5680350--5680402	12	4.0	13	81	16	56	30	0	1	67	1.01
5680660--5680775	51	2.3	52	80	7	132	31	6	6	56	1.48
5681769--5682132	155	2.4	153	86	6	515	52	8	9	29	1.64
5682231--5682267	19	1.9	20	88	5	58	21	0	5	72	1.04
5687189--5687466	130	2.1	130	79	7	296	37	12	14	35	1.84
5694130--5694157	4	7.0	4	100	0	56	50	25	0	25	1.50
5697456--5697482	7	3.9	7	100	0	54	0	11	0	88	0.50
5700084--5700123	22	1.9	22	85	10	57	50	0	0	50	1.00
5704037--5704065	3	9.7	3	100	0	58	34	0	0	65	0.93
5705435--5705515	37	2.2	37	100	0	162	49	12	6	32	1.65
5713274--5713315	21	2.0	21	85	0	57	38	7	7	47	1.58
5714830--5714872	21	2.0	21	95	0	77	27	0	37	34	1.57
5714853--5714885	16	2.1	16	94	0	57	33	0	36	30	1.58
5714864--5714958	45	2.1	44	88	1	136	34	5	27	32	1.79
5715120--5715154	18	2.0	17	88	5	52	54	0	0	45	0.99
5715078--5715150	27	2.7	27	76	8	76	52	2	0	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5715039--5715310	144	1.9	147	94	3	487	46	3	2	47	1.34
5715264--5715298	18	2.0	17	88	5	52	54	0	0	45	0.99
5715284--5715462	55	3.1	54	64	22	128	49	7	2	41	1.43
5715279--5715466	61	3.1	61	68	14	190	49	6	2	41	1.41
5715247--5715469	120	1.9	120	97	0	419	49	6	2	42	1.40
5715384--5715418	18	2.0	17	88	5	52	60	0	0	40	0.97
5715459--5715505	17	2.9	16	78	18	53	46	2	6	44	1.40
5715478--5715511	17	2.0	17	94	0	59	50	0	5	44	1.26
5715544--5715738	93	2.1	92	88	4	286	47	4	4	44	1.41
5717135--5717161	11	2.5	11	100	0	54	51	18	7	22	1.70
5719406--5719436	15	2.1	15	100	0	62	45	0	19	35	1.51
5723780--5723925	37	4.0	37	93	1	242	24	21	16	36	1.94
5723889--5724091	46	4.3	46	87	7	280	28	21	14	36	1.92
5723931--5724109	52	3.5	52	85	9	262	27	22	13	36	1.92
5723889--5724109	98	2.2	98	92	0	361	27	22	14	36	1.92
5726169--5726371	46	4.3	48	88	7	265	35	14	21	28	1.92
5726103--5726371	98	2.7	98	93	0	457	34	14	22	28	1.93
5726335--5726480	37	4.0	37	91	1	233	36	16	21	25	1.94
5746461--5746509	20	2.4	22	77	19	61	48	0	0	51	1.00
5749027--5749110	3	27.3	3	73	13	64	60	3	4	30	1.34
5749046--5749112	14	4.8	13	75	17	64	62	1	4	31	1.24
5750611--5750991	44	8.7	44	70	9	194	27	21	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5750567--5751034	175	2.7	175	92	0	747	28	21	19	30	1.98
5751040--5751296	87	2.9	88	84	2	322	26	24	21	28	1.99
5752426--5752472	21	2.2	21	88	0	67	25	38	10	25	1.88
5752566--5752600	10	3.5	10	92	7	54	8	11	0	80	0.92
5753430--5753459	14	2.2	14	94	5	53	0	16	0	83	0.65
5758123--5758209	3	28.3	3	74	13	70	60	3	4	31	1.33
5760309--5760334	12	2.2	12	100	0	52	7	15	30	46	1.74
5760403--5761003	114	5.3	113	86	3	769	24	21	25	27	1.99
5760403--5761003	227	2.6	225	86	4	818	24	21	25	27	1.99
5761250--5761298	14	3.4	14	91	2	71	26	0	38	34	1.57
5762102--5762318	107	2.0	108	85	6	298	52	11	11	25	1.70
5762210--5762443	125	1.9	125	85	6	332	50	11	11	26	1.73
5762093--5762790	232	3.0	234	92	4	1142	49	11	12	26	1.74
5762334--5762549	106	2.0	106	84	7	276	51	11	11	25	1.71
5762442--5762685	136	1.8	136	86	6	361	47	11	13	27	1.77
5762326--5762790	242	1.9	241	93	2	808	48	11	12	26	1.75
5762577--5762789	104	2.0	107	88	4	317	50	11	10	27	1.72
5765498--5765781	142	2.0	142	97	0	532	33	13	15	36	1.87
5766359--5766550	43	4.5	43	84	3	217	24	15	30	29	1.96
5767583--5767751	68	2.5	68	91	0	266	40	14	21	23	1.90
5768444--5768515	32	2.2	33	85	7	94	27	4	15	52	1.61
5773258--5773319	19	3.1	19	72	17	61	59	0	3	37	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5773203--5773319	42	2.9	40	75	19	118	54	1	5	38	1.33
5775016--5775070	19	2.9	19	81	2	67	27	29	27	16	1.97
5775523--5775549	11	2.5	11	100	0	54	29	7	7	55	1.55
5777908--5777983	6	13.3	6	78	13	54	52	0	47	0	1.00
5777948--5777982	3	11.7	3	87	0	52	40	0	60	0	0.97
5778207--5778322	50	2.3	50	83	5	146	27	0	14	56	1.44
5778253--5778319	12	5.4	12	74	13	64	28	0	14	56	1.39
5778326--5778414	40	2.4	38	81	10	112	32	5	10	51	1.59
5780028--5780086	25	2.3	25	82	8	66	59	10	5	25	1.50
5782178--5782875	161	4.4	161	91	2	1099	29	8	8	53	1.60
5782878--5782937	29	2.1	28	87	9	86	20	8	3	68	1.30
5783027--5783147	30	4.4	30	72	21	129	61	7	5	24	1.44
5783050--5783082	12	2.8	12	95	0	57	69	6	0	24	1.10
5783089--5783137	16	3.2	16	70	21	50	55	10	8	26	1.61
5783441--5783541	5	19.6	5	92	5	166	0	37	0	62	0.96
5784541--5784581	21	1.9	22	90	5	66	65	2	0	31	1.05
5784539--5784586	21	2.3	21	82	7	62	68	2	0	29	1.01
5793344--5793420	27	2.9	27	88	0	118	28	28	29	12	1.94
5796167--5796335	3	59.3	3	68	18	51	0	31	0	68	0.90
5796134--5796336	38	5.1	42	75	17	143	0	31	0	68	0.90
5796171--5796344	31	5.7	32	71	20	115	0	31	0	68	0.89
5796133--5796263	70	1.9	68	86	12	187	0	29	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5796197--5796344	45	3.3	45	94	3	253	0	32	0	67	0.91
5796205--5796344	44	3.2	44	94	2	244	0	32	0	67	0.91
5797511--5797687	77	2.3	77	88	2	257	37	9	21	32	1.85
5798404--5798546	31	4.6	31	75	0	124	20	20	32	26	1.97
5809648--5809701	22	2.3	24	78	9	58	37	1	5	55	1.34
5810024--5810084	31	2.0	31	83	0	77	31	18	16	34	1.93
5823706--5823777	37	2.0	36	83	5	92	38	1	2	56	1.22
5829452--5829499	17	2.9	17	90	3	71	27	0	18	54	1.44
5830719--5830750	13	2.5	13	94	0	55	31	0	12	56	1.37
5830845--5831036	50	3.7	50	88	4	240	27	23	29	19	1.99
5833476--5833548	23	3.2	22	63	14	58	38	8	26	27	1.84
5833451--5833589	46	3.0	46	90	2	226	35	9	25	29	1.87
5845914--5845952	12	3.2	12	85	3	51	23	5	2	69	1.21
5855145--5855187	7	5.9	7	78	10	50	30	2	4	62	1.28
5859511--5859551	20	2.0	21	85	4	57	65	7	0	26	1.18
5863143--5863263	60	2.0	60	100	0	242	41	4	11	42	1.63
5869023--5869056	13	2.5	14	85	4	52	32	14	11	41	1.82
5878047--5878076	4	7.5	4	92	0	51	46	0	3	50	1.18
5880556--5880778	79	2.8	79	78	6	254	33	10	27	28	1.90
5880757--5880809	26	2.0	26	92	0	88	43	1	32	22	1.64
5880713--5881046	131	2.5	132	93	0	571	35	7	28	27	1.84
5883755--5884336	79	7.7	79	70	14	263	34	8	26	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5883765--5883978	78	2.8	77	79	9	227	34	8	26	30	1.86
5883855--5884253	146	2.7	146	81	9	423	32	8	28	30	1.87
5890051--5890092	15	2.7	15	88	3	57	30	0	0	69	0.89
5890200--5890237	15	2.3	16	82	17	51	63	0	0	36	0.95
5890205--5890236	15	2.1	16	94	5	57	62	0	0	37	0.95
5893560--5893599	17	2.4	17	86	0	53	57	15	7	20	1.61
5907489--5907534	22	2.1	22	91	0	74	30	0	0	69	0.89
5907807--5907869	30	2.2	30	88	8	96	34	0	0	65	0.93
5909670--5909706	18	2.1	18	100	0	74	32	21	13	32	1.92
5910472--5910501	10	3.1	10	95	4	53	50	6	0	43	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199