genome.fa.s20.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  123  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35256400--35256658	90	2.9	89	79	7	251	35	13	26	24	1.93
35267629--35267887	27	9.7	27	81	5	303	40	20	16	22	1.90
35267629--35267887	53	4.9	53	83	6	310	40	20	16	22	1.90
35268765--35268825	17	3.5	17	71	8	59	47	1	19	31	1.59
35268765--35268818	18	3.0	18	71	7	56	48	1	20	29	1.60
35273079--35273657	47	12.8	46	80	12	435	33	8	30	27	1.87
35273333--35273672	47	7.3	47	92	1	522	33	9	29	28	1.88
35273791--35273869	37	2.1	37	90	0	122	24	18	31	25	1.98
35275724--35275826	43	2.4	43	96	0	197	23	15	34	26	1.94
35275808--35275881	29	2.6	29	84	4	96	25	16	31	27	1.96
35276192--35276308	40	2.9	40	80	7	114	25	23	25	24	2.00
35279563--35280129	47	12.1	47	92	2	845	32	8	30	28	1.88
35279720--35279794	23	3.2	23	62	23	57	32	5	32	30	1.80
35280247--35280325	37	2.1	37	83	0	95	25	17	29	27	1.98
35305286--35305413	64	2.0	64	92	0	211	39	23	7	29	1.81
35312677--35312801	64	2.0	64	96	0	232	39	24	7	28	1.82
35316371--35316471	52	1.9	52	95	0	184	25	17	22	33	1.96
35322865--35322965	52	1.9	52	100	0	202	25	17	22	33	1.96
35343610--35343775	40	4.2	40	82	8	144	27	27	19	24	1.99
35343645--35343830	80	2.3	80	83	9	220	28	27	20	23	1.99
35343647--35343775	40	3.2	40	88	2	197	28	27	19	24	1.98
35343650--35343830	40	4.5	40	81	7	154	27	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35361638--35361805	40	4.2	40	82	8	148	27	27	20	24	1.99
35361673--35361858	80	2.3	80	83	9	229	27	27	20	23	1.99
35361675--35361858	40	4.6	40	83	7	205	27	27	21	23	1.99
35364960--35365081	44	2.8	43	78	12	140	25	19	26	28	1.99
35372597--35373551	132	7.2	132	95	0	1694	28	23	19	28	1.98
35372873--35373463	44	13.4	44	63	17	138	28	23	18	29	1.98
35384714--35384755	21	2.0	22	86	13	61	30	2	0	66	1.04
35384721--35384768	22	2.1	23	85	14	64	33	0	0	66	0.92
35385983--35386047	6	10.8	6	98	0	121	30	18	33	16	1.94
35390819--35390849	7	4.4	7	100	0	62	25	0	0	74	0.82
35396831--35397327	264	1.9	264	90	0	796	37	20	6	35	1.80
35403701--35404229	265	2.0	265	93	1	918	41	16	12	28	1.85
35404227--35404284	28	2.1	28	90	3	91	27	24	25	22	2.00
35404234--35404292	28	2.1	28	93	0	100	28	20	25	25	1.99
35404395--35404501	26	4.1	26	91	0	169	37	24	19	18	1.94
35404666--35404779	27	4.2	27	86	2	158	20	15	19	44	1.86
35404990--35405027	20	1.9	20	88	0	58	18	34	18	28	1.95
35412103--35412164	28	2.2	28	83	8	74	32	24	22	20	1.98
35412462--35412604	27	5.3	27	83	5	155	23	18	16	41	1.90
35414674--35414743	35	2.0	35	97	0	131	21	22	12	42	1.87
35423451--35423608	71	2.2	71	78	2	174	17	18	29	34	1.94
35427605--35427683	31	2.5	31	83	0	104	63	0	31	5	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35430682--35430762	28	2.9	28	90	0	135	55	8	7	28	1.57
35433720--35433777	31	1.9	31	89	3	91	13	32	22	31	1.93
35435817--35435870	26	2.1	26	85	0	72	25	18	24	31	1.97
35444424--35444532	35	3.0	37	76	10	125	30	33	6	30	1.83
35444772--35444877	43	2.5	43	85	3	133	39	25	16	18	1.91
35468742--35470243	443	3.4	446	95	1	2698	28	15	18	37	1.92
35471502--35472785	437	2.9	437	90	5	2018	29	16	18	35	1.93
35476824--35478138	447	3.0	446	94	1	2307	28	16	18	36	1.92
35480153--35482361	448	4.9	447	96	0	4028	28	16	18	36	1.92
35480153--35482361	895	2.5	894	96	0	4053	28	16	18	36	1.92
35481943--35490018	815	9.5	815	80	10	6926	29	17	18	34	1.94
35483571--35485782	448	4.9	448	96	0	4048	28	16	18	36	1.92
35486992--35489203	448	4.9	448	96	0	4039	28	16	18	36	1.92
35489598--35491812	448	4.9	448	96	0	4031	28	16	18	36	1.92
35489598--35491812	895	2.5	895	96	0	4054	28	16	18	36	1.92
35496067--35496127	24	2.5	24	71	23	65	49	0	44	6	1.28
35504446--35504551	53	2.0	52	92	1	176	49	13	5	32	1.65
35508326--35508426	26	3.9	26	84	2	123	39	10	19	29	1.86
35508326--35508426	51	2.0	52	86	5	143	39	10	19	29	1.86
35519817--35522495	779	3.5	785	86	12	3657	32	18	18	31	1.95
35522116--35524225	409	4.9	434	84	13	2675	30	16	18	35	1.93
35525985--35526030	15	3.1	15	75	15	51	21	6	10	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35526060--35528229	440	5.1	437	88	8	3236	29	16	18	35	1.93
35528526--35529838	447	2.9	446	95	1	2371	29	16	18	36	1.92
35529419--35531472	815	2.5	815	96	0	3754	30	18	18	32	1.95
35531048--35533207	447	4.9	448	82	10	2755	29	16	18	36	1.92
35532793--35534793	803	2.5	803	93	2	3433	30	18	18	32	1.95
35534383--35536115	429	3.9	437	91	6	2686	29	15	18	37	1.92
35536483--35537796	444	2.9	447	93	1	2266	28	16	18	36	1.92
35537371--35539419	810	2.5	813	95	1	3619	30	18	18	32	1.95
35540255--35543273	435	6.9	446	90	5	4717	28	16	18	37	1.92
35543663--35544825	428	2.9	408	77	20	1220	26	14	19	38	1.91
35546486--35548089	448	3.7	441	91	7	2593	28	15	18	37	1.92
35548480--35550682	448	4.9	448	97	1	4112	28	16	18	36	1.92
35562770--35562866	30	3.4	30	66	20	82	51	10	6	31	1.61
35562774--35562880	53	2.0	53	94	0	187	48	13	5	32	1.65
35566825--35566925	26	3.9	26	84	2	123	39	10	19	29	1.86
35566825--35566925	51	2.0	52	86	5	143	39	10	19	29	1.86
35570809--35570849	21	2.0	21	90	0	64	31	9	34	24	1.88
35570814--35570861	21	2.3	21	82	7	62	35	16	29	18	1.93
35572633--35572675	22	2.0	22	82	17	54	51	25	6	16	1.69
35579202--35579375	64	2.7	65	80	6	183	31	17	25	26	1.97
35591710--35591868	41	3.9	41	82	4	187	38	23	19	17	1.92
35598776--35598934	41	3.9	41	86	1	205	35	13	28	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35602883--35602961	9	8.8	9	97	0	122	39	27	10	22	1.86
35603491--35603526	18	2.0	18	88	0	54	27	13	0	58	1.36
35605598--35605627	16	1.9	16	93	6	53	50	20	0	30	1.49
35608573--35608633	19	3.1	19	71	26	54	63	0	31	4	1.15
35608568--35608648	42	1.9	43	87	7	121	64	0	30	4	1.15
35610834--35610864	14	2.2	14	94	0	53	61	9	6	22	1.50
35610847--35610938	28	3.3	28	84	6	125	55	6	6	31	1.51
35611531--35611797	51	5.3	51	94	0	446	28	23	16	31	1.96
35613219--35613253	17	2.1	17	100	0	70	54	11	5	28	1.59
35613676--35613701	4	6.5	4	100	0	52	26	0	0	73	0.84
35618098--35618133	18	2.0	18	94	0	63	47	5	11	36	1.63
35620754--35621928	47	24.7	47	94	2	2000	32	8	29	29	1.87
35622047--35622125	37	2.1	37	85	0	104	25	17	30	26	1.97
35624283--35624325	3	14.3	3	95	0	77	32	0	2	65	1.06
35624685--35624780	39	2.5	39	80	6	108	20	23	28	27	1.99
35636417--35636443	14	1.9	14	100	0	54	40	0	0	59	0.98
35637394--35637431	6	6.3	6	82	11	51	15	0	2	81	0.80
35644707--35644753	23	2.0	23	91	0	76	27	10	10	51	1.70
35648740--35648865	27	4.7	26	81	6	135	27	17	26	27	1.98
35648739--35648865	54	2.3	54	82	11	152	28	17	26	27	1.98
35659170--35659207	17	2.2	17	90	0	58	34	36	7	21	1.82
35660958--35660996	19	2.0	19	85	5	51	30	5	12	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35671827--35671896	34	2.1	34	97	0	131	27	14	27	31	1.95
35674152--35674294	40	3.6	40	80	7	148	24	20	28	26	1.99
35681502--35681539	19	2.0	19	85	10	51	21	42	0	36	1.53
35682668--35682700	15	2.1	16	88	5	50	24	6	6	63	1.40
35688930--35688967	19	2.0	19	85	10	51	21	42	0	36	1.53
35692410--35692482	38	1.9	37	86	8	103	31	21	1	45	1.61
35692470--35692513	23	1.9	22	82	17	54	38	22	0	38	1.55
35692612--35692687	23	3.3	23	94	0	134	30	26	22	21	1.99
35693136--35693194	30	2.0	30	86	0	82	28	25	8	37	1.85
35694174--35694208	14	2.5	14	86	13	54	51	8	0	40	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199