genome.fa.s20.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  129  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37360264--37360384	60	2.0	60	100	0	242	42	6	4	45	1.51
37361558--37361595	17	2.1	19	85	14	53	50	10	5	34	1.59
37361672--37361777	19	5.7	19	75	10	85	53	2	0	42	1.22
37361725--37361782	10	6.0	10	76	8	57	60	3	0	36	1.14
37370637--37370679	16	2.7	16	77	0	50	48	2	2	46	1.27
37370790--37370831	20	2.1	20	82	8	50	52	0	0	47	1.00
37372315--37372347	15	2.1	16	88	5	50	60	3	3	33	1.27
37376344--37376451	8	13.5	8	69	10	51	37	0	1	60	1.08
37376340--37376451	5	22.6	5	80	15	126	38	0	1	59	1.08
37376520--37376583	33	1.9	34	87	3	94	43	0	7	48	1.32
37376698--37376752	3	19.0	3	75	14	53	34	0	3	61	1.13
37376918--37376948	15	2.0	15	93	6	53	64	9	19	6	1.45
37376905--37376948	16	2.8	16	83	13	56	68	9	18	4	1.34
37376901--37376987	26	3.4	25	78	7	77	70	4	22	2	1.18
37377856--37377963	38	2.8	39	76	9	105	23	19	25	31	1.98
37383829--37383873	23	2.0	23	82	4	56	51	11	2	35	1.50
37384372--37384414	21	2.1	20	86	4	59	76	4	13	4	1.10
37388688--37388739	23	2.3	23	93	0	86	38	0	11	50	1.39
37389595--37389620	5	5.2	5	100	0	52	19	0	0	80	0.71
37396953--37397004	23	2.3	23	96	0	95	36	0	13	50	1.42
37396962--37397004	13	3.5	13	75	18	56	37	0	13	48	1.43
37401498--37401542	22	2.0	22	100	0	90	26	13	8	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37402018--37402315	70	4.3	70	78	3	260	29	26	19	25	1.98
37402018--37402321	140	2.2	139	80	1	322	28	26	19	25	1.99
37403847--37404587	70	10.6	70	83	0	636	28	26	18	26	1.98
37408678--37408714	15	2.5	15	100	0	74	35	0	35	29	1.58
37413008--37413064	24	2.4	24	75	0	60	22	28	21	28	1.99
37414164--37414196	5	6.8	5	86	6	50	81	15	3	0	0.80
37416683--37416722	19	2.1	19	85	0	53	27	0	12	60	1.33
37417763--37417969	55	3.9	51	89	6	256	23	7	14	53	1.67
37419343--37419384	11	3.5	12	81	9	50	38	7	21	33	1.81
37422551--37422589	11	3.5	11	85	0	51	30	2	38	28	1.70
37422706--37422734	13	2.1	14	93	6	51	10	6	13	68	1.37
37431185--37431481	50	5.8	50	83	2	299	22	27	21	28	1.99
37432038--37432063	12	2.2	12	100	0	52	69	15	0	15	1.20
37435304--37435359	25	2.2	25	84	6	69	58	1	3	35	1.26
37435890--37435923	16	2.2	15	89	5	50	55	0	0	44	0.99
37435887--37435933	22	2.2	20	85	14	60	55	0	0	44	0.99
37435888--37435947	20	3.1	18	77	15	50	48	3	0	48	1.18
37435991--37436051	30	2.0	30	84	6	79	47	9	8	34	1.66
37441988--37442036	24	2.0	24	92	0	80	38	20	4	36	1.72
37443143--37443389	50	4.8	50	78	3	208	23	28	21	26	1.99
37450408--37450592	79	2.3	81	83	7	227	24	22	27	24	2.00
37450409--37450592	40	4.6	40	82	9	207	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37450461--37450625	79	2.1	79	83	6	201	26	21	27	24	1.99
37453535--37453582	21	2.2	21	85	3	60	37	25	14	22	1.92
37460767--37460825	15	3.8	16	78	10	59	33	18	8	38	1.81
37460774--37460819	16	2.9	17	78	12	53	34	17	6	41	1.75
37467246--37467307	30	2.1	30	87	6	90	48	11	8	32	1.68
37474582--37474628	22	2.1	22	84	7	60	57	0	4	38	1.18
37482194--37482266	34	2.1	34	97	0	137	27	10	34	27	1.90
37485491--37485578	19	4.5	19	69	21	65	75	2	17	5	1.11
37485511--37485577	15	4.5	15	74	12	50	73	2	17	5	1.17
37485483--37485566	35	2.4	36	80	9	102	73	3	16	5	1.17
37489682--37489737	23	2.4	23	84	3	67	41	30	1	26	1.66
37489798--37490317	259	2.0	260	99	0	1033	28	20	13	37	1.90
37517968--37518023	29	1.9	29	96	0	103	44	26	5	23	1.74
37530317--37530358	6	6.7	6	89	5	57	28	4	2	64	1.26
37544434--37544470	18	2.0	20	89	10	60	40	5	0	54	1.24
37549384--37549633	27	9.3	27	86	0	302	40	23	17	18	1.91
37549402--37549660	81	3.2	81	84	3	326	40	23	17	18	1.91
37549403--37549660	54	4.8	52	79	9	234	40	23	17	18	1.91
37559065--37559090	4	6.5	4	100	0	52	23	0	0	76	0.78
37566384--37566626	40	6.1	40	95	0	434	30	20	26	23	1.98
37574938--37575204	40	6.7	40	96	1	493	29	20	28	21	1.98
37574938--37575204	79	3.4	80	96	1	493	29	20	28	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37574938--37575204	119	2.2	120	95	2	493	29	20	28	21	1.98
37597242--37598186	132	7.2	132	93	0	1602	29	20	24	25	1.99
37598174--37598282	44	2.5	44	82	5	123	27	21	21	30	1.98
37603805--37603982	27	6.6	27	85	3	214	26	14	28	30	1.95
37603806--37603961	82	1.9	81	89	3	242	26	14	28	30	1.95
37603802--37603982	82	2.2	81	84	2	238	27	14	27	30	1.95
37611858--37612035	27	6.6	27	85	3	214	26	14	28	30	1.95
37611859--37612014	82	1.9	81	89	3	242	26	14	28	30	1.95
37611855--37612035	82	2.2	81	84	2	238	27	14	27	30	1.95
37615019--37615228	42	5.0	42	85	6	257	31	20	23	24	1.98
37615019--37615228	85	2.5	85	84	7	259	31	20	23	24	1.98
37615673--37615741	21	3.3	21	83	0	84	4	42	17	36	1.69
37620772--37621055	25	10.6	25	70	19	128	38	1	17	42	1.56
37620772--37621118	9	38.6	9	67	16	168	36	1	17	43	1.60
37620825--37621043	16	13.8	16	71	17	102	36	0	17	44	1.56
37620841--37620892	19	2.8	19	85	2	70	32	1	19	46	1.61
37623600--37623833	115	2.0	115	92	0	387	33	18	19	28	1.95
37624286--37624367	7	12.0	6	78	15	56	46	31	2	19	1.63
37624305--37624365	21	2.9	21	76	9	70	45	34	3	16	1.63
37624286--37624367	14	5.9	13	77	17	67	46	31	2	19	1.63
37624495--37624544	20	2.5	21	83	6	68	48	38	0	14	1.44
37624694--37624756	7	8.9	7	76	8	56	34	46	3	15	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37625354--37625506	72	2.1	72	80	2	173	31	24	20	22	1.98
37627579--37627629	18	2.8	19	76	8	61	49	7	0	43	1.32
37627595--37627622	12	2.3	12	100	0	56	50	7	0	42	1.30
37627914--37627955	22	1.9	22	85	9	59	19	14	0	66	1.25
37631220--37631267	9	5.3	9	89	0	78	79	8	0	12	0.94
37631265--37631312	20	2.5	19	83	10	53	75	0	20	4	0.97
37632135--37632170	16	2.2	17	95	5	65	80	0	8	11	0.90
37633375--37635286	88	21.7	88	94	0	3171	27	22	24	25	2.00
37633431--37635242	44	41.2	43	65	19	684	26	22	24	25	2.00
37635313--37635472	46	3.5	46	89	0	239	26	15	25	31	1.96
37635445--37635847	132	3.1	132	91	0	628	31	18	24	26	1.97
37635509--37635719	44	4.8	44	68	11	126	32	17	24	26	1.97
37637402--37637431	6	5.0	6	95	0	51	50	13	0	36	1.42
37637728--37637769	22	1.9	22	85	9	59	19	14	0	66	1.25
37639160--37639196	3	12.3	3	100	0	74	0	32	0	67	0.91
37639575--37639644	20	3.5	20	70	24	58	37	2	1	58	1.22
37639575--37639640	22	3.2	20	70	18	55	37	3	1	57	1.23
37643968--37644001	6	5.7	6	92	0	59	35	2	32	29	1.73
37647748--37647798	19	2.6	20	93	6	79	31	0	39	29	1.57
37647756--37647798	19	2.3	19	100	0	86	30	0	41	27	1.56
37648853--37649020	52	3.2	52	88	0	237	37	10	28	23	1.88
37648853--37649022	26	6.5	26	88	0	214	37	10	28	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37648853--37649055	52	3.9	52	84	0	217	37	10	28	23	1.88
37648874--37649054	78	2.3	78	83	4	213	37	10	28	23	1.88
37649037--37649092	27	2.1	26	83	9	69	26	19	26	26	1.99
37651311--37651349	20	2.0	20	90	10	62	35	2	7	53	1.43
37654733--37654784	6	8.3	6	78	16	52	82	5	0	11	0.82
37654733--37654784	13	4.1	12	80	9	59	82	5	0	11	0.82
37654733--37654784	12	4.2	12	83	13	61	82	5	0	11	0.82
37655829--37655862	17	1.9	18	94	5	61	35	5	0	58	1.22
37657968--37658107	69	2.0	69	94	0	244	27	20	22	30	1.98
37663672--37663702	11	2.7	12	90	10	55	25	9	6	58	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199