genome.fa.s20.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  142  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41470298--41470357	13	4.6	12	76	17	57	15	8	3	73	1.20
41471986--41472050	20	3.3	19	73	16	51	38	16	21	23	1.93
41476445--41476504	13	4.4	13	79	10	66	15	8	3	73	1.20
41481674--41481738	16	4.6	14	76	16	55	72	3	9	15	1.23
41481717--41481770	16	3.7	14	79	18	58	72	9	12	5	1.27
41481717--41481792	31	2.6	29	82	11	93	69	7	13	9	1.35
41482722--41482763	18	2.3	18	87	0	57	71	4	16	7	1.26
41486613--41486708	15	5.9	16	70	17	58	65	3	26	5	1.28
41486611--41486665	15	3.8	15	80	2	60	72	1	23	1	1.04
41493250--41493345	15	5.9	16	70	17	58	65	3	26	5	1.28
41493248--41493302	15	3.8	15	80	2	60	72	1	23	1	1.04
41499885--41499980	15	5.9	16	70	17	58	65	3	26	5	1.28
41499883--41499937	15	3.8	15	80	2	60	72	1	23	1	1.04
41506951--41506984	18	1.9	18	88	5	52	8	35	2	52	1.47
41507067--41507098	15	2.1	16	94	5	57	6	21	0	71	1.07
41508058--41508136	13	5.6	13	73	18	52	15	8	3	72	1.24
41508056--41508136	15	5.6	14	77	15	67	14	8	3	72	1.22
41508041--41508081	18	2.3	18	87	4	57	7	12	7	73	1.25
41508017--41508110	13	6.5	13	73	17	62	12	11	5	70	1.32
41508073--41508147	12	5.7	13	71	21	50	14	6	4	74	1.17
41508115--41508148	11	3.0	11	86	4	50	11	2	8	76	1.12
41514268--41514330	12	4.8	12	73	19	54	15	7	3	73	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41514255--41514330	13	5.6	13	72	21	59	13	9	5	72	1.26
41515000--41515046	20	2.3	20	81	0	58	29	34	12	23	1.92
41515725--41515771	20	2.3	20	81	0	58	29	34	12	23	1.92
41514885--41516335	725	2.0	725	99	0	2850	29	15	18	37	1.91
41517276--41517330	29	1.9	28	85	3	74	80	3	12	3	0.98
41517298--41517332	18	2.0	18	88	5	54	82	2	11	2	0.88
41518357--41518462	48	2.2	47	85	9	135	59	1	24	14	1.45
41520131--41520177	20	2.3	20	81	0	58	29	34	12	23	1.92
41522522--41522579	10	5.7	10	76	11	64	29	27	13	29	1.94
41522522--41522582	20	3.0	20	83	9	79	27	26	13	32	1.93
41523943--41523967	12	2.1	12	100	0	50	76	8	0	16	1.02
41523929--41523988	21	2.9	21	76	0	57	78	5	8	8	1.09
41525049--41525098	18	2.8	18	87	0	64	76	6	14	4	1.13
41525045--41525098	6	9.2	6	77	2	56	75	5	14	3	1.12
41525137--41525171	18	1.9	18	88	11	54	57	0	20	22	1.41
41527239--41527296	10	5.7	10	76	11	64	29	27	13	29	1.94
41527239--41527299	20	3.0	20	83	9	79	27	26	13	32	1.93
41529438--41529484	20	2.3	20	85	0	67	21	12	36	29	1.91
41530212--41530274	21	3.0	21	88	2	81	33	31	4	30	1.78
41531311--41531360	14	3.6	14	74	15	50	2	20	2	76	0.99
41533446--41533489	13	3.5	13	96	3	81	13	4	6	75	1.17
41539833--41539863	11	2.8	11	100	0	62	77	0	9	12	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41540923--41540964	18	2.3	18	87	0	57	71	4	16	7	1.26
41544121--41544151	11	2.7	11	95	5	53	77	0	9	12	0.99
41545211--41545252	18	2.3	18	87	0	57	71	4	16	7	1.26
41549725--41549750	13	2.0	13	100	0	52	46	0	7	46	1.31
41552016--41552058	21	2.0	22	86	4	61	25	20	6	46	1.76
41552164--41552210	23	2.1	23	84	7	62	51	12	4	31	1.59
41554992--41555038	20	2.3	20	81	0	58	23	12	34	29	1.92
41557863--41557887	11	2.3	11	100	0	50	16	8	8	68	1.38
41557809--41557878	36	2.0	35	88	2	104	8	15	1	74	1.13
41557809--41557881	35	2.1	36	85	12	100	8	16	1	73	1.13
41559382--41559428	20	2.3	20	81	0	58	23	12	34	29	1.92
41561474--41561526	23	2.4	22	76	20	56	9	18	1	69	1.25
41565492--41565531	18	2.2	18	86	4	53	12	27	0	60	1.33
41566599--41566652	15	3.4	16	85	10	76	16	9	5	68	1.35
41566599--41566654	14	3.7	15	88	7	78	17	10	5	66	1.41
41566691--41566725	12	2.9	12	86	0	52	14	2	8	74	1.17
41567564--41567606	21	2.0	22	86	4	61	25	20	6	46	1.76
41567712--41567758	23	2.1	23	84	7	62	51	12	4	31	1.59
41574776--41574809	18	1.9	18	88	5	52	8	35	2	52	1.47
41575835--41575899	13	5.4	12	73	12	53	6	10	4	78	1.07
41575834--41575899	24	2.7	26	84	15	79	6	12	4	77	1.10
41575866--41575939	13	5.5	13	75	19	71	12	5	6	75	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41575866--41575939	12	5.5	13	75	21	57	12	5	6	75	1.16
41583058--41583118	6	9.8	6	78	15	54	77	1	18	3	0.99
41583166--41583196	12	2.6	12	100	0	62	45	12	16	25	1.83
41583199--41583232	12	2.9	12	86	4	52	76	0	14	8	1.01
41583209--41583265	30	1.9	30	89	7	89	63	0	22	14	1.30
41592015--41592070	19	2.7	21	83	13	80	58	17	5	17	1.56
41601536--41601569	11	3.0	11	87	8	50	76	8	2	11	1.12
41601537--41601609	13	5.5	13	78	12	69	75	4	6	13	1.15
41601548--41601609	29	2.1	29	82	5	72	74	3	8	14	1.18
41601602--41601639	16	2.4	16	86	8	51	71	7	15	5	1.28
41601537--41601624	41	2.2	40	84	10	108	73	5	7	12	1.22
41602532--41602566	18	1.9	18	88	11	54	57	0	20	22	1.41
41607650--41607701	23	2.3	22	75	21	54	9	23	1	65	1.32
41607743--41607800	10	5.7	10	76	11	64	29	27	13	29	1.94
41607743--41607803	20	3.0	20	83	9	79	27	26	13	32	1.93
41609147--41609219	12	5.7	12	74	15	56	75	4	6	13	1.15
41609147--41609235	41	2.2	40	84	7	119	74	5	7	12	1.21
41609199--41609270	28	2.6	28	77	12	76	69	6	13	9	1.36
41610140--41610174	18	1.9	18	88	11	54	57	0	20	22	1.41
41612246--41612303	10	5.7	10	76	11	64	29	27	13	29	1.94
41612246--41612306	20	3.0	20	83	9	79	27	26	13	32	1.93
41615412--41615437	13	2.0	13	100	0	52	76	0	7	15	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41615407--41615464	30	1.9	30	85	0	80	70	6	8	13	1.32
41615412--41615464	14	3.7	15	83	11	58	75	5	7	11	1.18
41615412--41615494	15	5.8	13	72	19	51	74	4	10	9	1.20
41615542--41615571	1	30.0	1	100	0	60	100	0	0	0	0.00
41617776--41617832	23	2.4	25	80	14	66	63	3	22	10	1.42
41623089--41623275	40	4.7	40	93	0	295	21	26	21	30	1.98
41631660--41631847	40	4.7	40	96	0	340	21	27	20	31	1.98
41635574--41635598	13	1.9	13	100	0	50	0	20	0	80	0.72
41636299--41636368	24	2.9	23	77	14	79	32	4	10	52	1.54
41638792--41639960	44	26.7	44	85	1	1510	30	20	27	21	1.98
41639980--41640113	44	3.0	43	68	16	112	24	23	26	26	2.00
41639980--41640142	88	1.9	88	89	0	254	25	22	25	26	2.00
41640854--41640878	13	1.9	13	100	0	50	0	20	0	80	0.72
41641886--41642147	40	6.6	40	87	3	307	24	20	27	26	1.99
41641886--41642147	79	3.3	80	84	2	305	24	20	27	26	1.99
41641925--41642182	79	3.3	80	83	3	238	25	20	27	25	1.99
41653978--41654006	12	2.4	12	100	0	58	79	6	0	13	0.93
41653968--41654006	10	3.7	10	83	12	51	76	10	0	12	1.01
41654047--41654097	13	3.9	13	94	0	93	60	0	13	25	1.33
41658241--41658272	13	2.5	13	100	0	64	81	6	0	12	0.87
41658313--41658366	14	3.9	14	90	4	92	62	0	12	24	1.30
41658313--41658366	13	4.0	13	88	7	81	62	0	12	24	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41658313--41658366	27	2.0	27	96	0	99	62	0	12	24	1.30
41668453--41668515	32	2.0	33	84	9	87	41	14	17	26	1.88
41668453--41668517	31	2.1	30	83	8	78	43	13	16	26	1.86
41668946--41668989	22	2.0	22	86	4	63	45	11	0	43	1.40
41677995--41678095	52	1.9	52	92	4	168	32	19	18	28	1.96
41683095--41683173	37	2.1	37	88	0	113	25	30	18	25	1.98
41683292--41683565	47	5.8	47	95	0	467	29	29	8	33	1.86
41690168--41690230	12	5.7	11	87	9	85	14	4	6	74	1.18
41690167--41690220	12	4.6	12	95	2	92	14	5	5	74	1.19
41707753--41707799	25	1.9	24	82	4	58	53	10	17	19	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199