genome.fa.s20.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  172  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50273632--50273698	19	3.5	19	71	17	57	25	23	28	22	1.99
50273836--50273891	25	2.2	25	93	0	94	30	25	7	37	1.82
50274651--50274723	3	24.3	3	100	0	146	65	0	34	0	0.93
50275595--50275655	28	2.3	28	83	13	76	68	1	1	27	1.08
50275876--50275900	9	2.8	9	100	0	50	24	0	0	76	0.80
50275883--50275942	32	1.9	31	86	3	84	31	5	1	61	1.27
50290879--50291705	120	6.9	120	98	0	1595	43	2	6	47	1.41
50291853--50291943	45	2.0	45	85	2	121	37	28	6	27	1.82
50291924--50291992	16	4.2	16	92	3	120	36	37	1	24	1.65
50291924--50291992	33	2.1	32	94	2	120	36	37	1	24	1.65
50303153--50303453	146	2.1	146	98	0	584	33	23	17	25	1.96
50305037--50305237	92	2.2	92	87	2	280	36	10	19	33	1.86
50319335--50319400	33	2.0	33	93	0	114	15	24	16	43	1.86
50321193--50321231	18	2.1	19	85	4	53	43	15	15	25	1.86
50323845--50323910	33	2.0	33	93	0	114	15	24	15	45	1.84
50327488--50327543	24	2.3	24	93	0	94	57	17	10	14	1.65
50327531--50327790	127	2.0	127	95	0	466	45	13	11	30	1.78
50328524--50328737	41	5.3	41	85	2	272	22	16	21	39	1.92
50328524--50328730	81	2.6	81	85	3	274	23	16	20	39	1.92
50338929--50338982	6	9.0	6	95	0	72	25	0	57	16	1.40
50338929--50338990	12	5.2	12	88	0	79	27	0	56	16	1.40
50338930--50338990	18	3.4	18	86	0	86	26	0	57	16	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50353319--50353378	24	2.5	24	86	0	84	51	23	3	21	1.62
50353319--50353393	24	3.2	24	77	5	64	54	21	2	21	1.57
50354836--50355020	43	4.3	43	84	0	226	31	23	17	27	1.97
50360838--50361197	9	41.1	9	75	10	266	33	0	18	47	1.53
50360812--50361186	208	1.8	207	84	5	524	33	0	17	47	1.54
50361511--50361558	17	3.1	17	69	30	52	33	2	0	64	1.05
50361675--50361710	18	2.0	18	94	0	63	25	19	38	16	1.92
50362014--50362061	21	2.3	21	85	7	62	50	0	8	41	1.33
50361757--50362275	123	4.2	123	92	3	841	44	4	8	42	1.52
50364055--50364132	41	2.0	39	90	7	122	37	3	5	53	1.41
50364486--50364684	7	27.4	7	68	12	62	45	33	1	20	1.58
50364498--50364539	22	1.9	22	90	0	66	47	30	0	21	1.51
50364577--50364652	36	2.1	35	85	2	98	44	32	0	22	1.53
50365015--50365117	40	2.6	40	80	4	111	28	23	18	30	1.98
50365767--50365795	15	1.9	15	100	0	58	27	0	13	58	1.36
50366482--50366515	3	11.3	3	100	0	68	32	0	0	67	0.91
50378037--50378071	16	2.2	16	100	0	70	37	11	0	51	1.38
50385208--50385280	20	3.7	20	75	14	69	36	21	31	9	1.86
50394358--50394395	12	3.2	12	85	3	51	23	2	5	68	1.23
50396008--50396111	44	2.3	45	95	3	192	45	29	2	22	1.67
50396010--50396078	19	3.0	25	64	24	69	44	31	2	20	1.66
50399779--50399915	20	7.3	20	61	14	67	32	6	11	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50399783--50399931	37	4.0	37	96	0	253	33	6	12	46	1.68
50399825--50399922	17	5.4	17	64	13	52	31	4	13	51	1.60
50403632--50403668	16	2.4	16	90	4	58	43	13	0	43	1.44
50403850--50403877	12	2.3	12	100	0	56	35	17	0	46	1.49
50412424--50412460	12	3.1	12	84	0	56	21	24	21	32	1.98
50415863--50415920	10	5.7	10	76	11	64	29	27	13	29	1.94
50415863--50415923	20	3.0	20	83	9	79	27	26	13	32	1.93
50417804--50417869	31	2.1	31	86	5	89	39	13	7	39	1.73
50419180--50419221	21	2.1	20	91	8	68	59	0	0	40	0.97
50419190--50419229	21	1.9	21	84	0	53	65	2	0	32	1.06
50425342--50425391	21	2.3	22	82	3	57	56	6	4	34	1.43
50425343--50425385	13	3.1	14	87	9	54	60	4	2	32	1.30
50425251--50426343	233	4.6	231	78	11	1021	43	7	11	37	1.69
50436069--50436138	18	3.9	19	80	10	85	25	10	25	38	1.87
50436069--50436142	27	2.7	27	79	8	87	27	9	24	39	1.86
50436069--50436142	9	8.2	9	77	8	71	27	9	24	39	1.86
50441178--50441231	25	2.0	26	86	10	74	40	5	5	48	1.50
50441584--50441621	15	2.5	15	86	0	58	47	2	0	50	1.15
50441648--50441686	14	3.0	13	82	10	53	43	0	0	56	0.99
50441679--50441719	13	3.3	13	86	6	50	68	0	0	31	0.90
50441814--50441844	6	5.2	6	100	0	62	80	0	0	19	0.71
50442209--50442409	91	2.2	90	83	4	235	35	18	8	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50442562--50442622	26	2.3	26	86	8	79	59	1	3	36	1.24
50442579--50442645	33	2.0	33	83	11	84	61	1	2	34	1.20
50442637--50442675	20	2.0	20	90	10	62	66	5	2	25	1.25
50442932--50442978	19	2.5	19	80	10	53	27	6	2	63	1.30
50442915--50442980	21	3.2	20	73	16	55	28	6	1	63	1.27
50443018--50443070	9	6.0	9	80	12	56	26	3	1	67	1.17
50443002--50443056	18	2.9	19	78	8	58	32	3	1	61	1.24
50445594--50445644	11	4.7	11	79	13	61	39	0	0	60	0.97
50445594--50445669	32	2.5	30	84	4	89	39	0	1	59	1.06
50448424--50448471	23	2.1	23	84	0	60	33	20	27	18	1.96
50449004--50449042	5	7.6	5	82	5	51	41	17	0	41	1.50
50456196--50456243	23	2.1	23	84	0	60	33	20	27	18	1.96
50456776--50456814	5	7.6	5	82	5	51	41	17	0	41	1.50
50463649--50463717	23	3.0	24	73	12	63	39	15	26	18	1.91
50463739--50463787	23	2.1	23	84	0	62	34	20	26	18	1.95
50471452--50471499	23	2.1	23	84	0	60	33	20	27	18	1.96
50472032--50472070	5	7.6	5	82	5	51	41	17	0	41	1.50
50479121--50479193	24	3.1	23	80	7	83	39	19	23	17	1.92
50479773--50479811	5	7.6	5	82	5	51	43	17	0	38	1.50
50481644--50481760	62	1.9	60	82	5	146	51	4	2	41	1.35
50482579--50482668	45	2.0	45	100	0	180	31	20	13	35	1.91
50483734--50483789	15	3.9	14	77	20	53	33	1	0	64	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50491599--50493579	989	2.0	989	99	0	3899	33	17	20	29	1.95
50496069--50496093	2	12.5	2	100	0	50	48	0	0	52	1.00
50500867--50500899	9	3.7	9	95	0	57	57	3	6	33	1.38
50503168--50503265	42	2.3	44	84	7	130	36	24	13	25	1.92
50516743--50516970	48	4.7	47	73	10	158	35	17	22	25	1.95
50517517--50517578	13	4.8	13	78	4	54	27	16	25	30	1.96
50537735--50537789	19	2.9	19	77	0	65	40	0	0	60	0.97
50539189--50539246	18	3.4	16	76	17	55	36	1	3	58	1.25
50539302--50539326	8	3.1	8	100	0	50	12	0	0	88	0.53
50543607--50543663	15	3.5	15	71	17	51	45	1	3	49	1.29
50543696--50543732	16	2.3	16	86	13	58	40	0	0	59	0.97
50543755--50543801	16	2.9	16	84	6	51	51	0	2	46	1.13
50543746--50543805	28	2.1	29	87	9	88	51	0	1	46	1.10
50543752--50543802	13	3.5	15	78	13	61	50	0	1	47	1.12
50543781--50543834	22	2.5	22	81	6	56	38	0	1	59	1.08
50547376--50547424	22	2.2	23	88	3	73	32	0	4	63	1.13
50559526--50559727	60	3.4	60	77	6	198	38	26	12	22	1.90
50563136--50563205	33	2.2	32	84	2	86	64	1	0	34	1.03
50563176--50563288	11	11.2	11	66	22	52	57	0	2	39	1.13
50563143--50563294	42	3.7	41	81	10	177	61	0	1	36	1.12
50563143--50563292	80	1.9	82	85	2	214	60	0	2	36	1.13
50574663--50574730	31	2.2	31	89	5	102	47	10	10	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50579823--50579874	27	1.9	27	100	0	104	25	21	38	15	1.92
50583183--50583245	5	12.8	5	89	3	101	57	0	0	42	0.99
50584922--50584971	3	17.0	3	83	4	66	32	4	2	62	1.25
50595077--50595306	99	2.4	97	85	4	302	29	22	20	27	1.99
50595983--50596050	31	2.2	31	82	10	77	66	7	0	26	1.18
50598629--50598670	20	2.1	20	86	0	57	47	0	4	47	1.23
50612438--50612506	26	2.7	26	90	0	102	27	24	8	39	1.85
50616183--50616215	14	2.4	14	94	0	57	42	18	0	39	1.50
50641203--50641236	18	1.9	18	88	5	52	14	17	0	67	1.23
50641605--50641639	18	2.0	17	94	5	61	42	0	0	57	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199