genome.fa.s20.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  36  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11079424--11079541	49	2.4	51	85	5	161	27	19	27	25	1.99
11079424--11079542	25	4.8	25	80	13	111	27	19	26	26	1.99
11082481--11082541	23	2.7	23	89	0	86	42	4	29	22	1.75
11082718--11082832	57	2.0	57	94	0	203	35	11	25	27	1.90
11085574--11085619	24	1.9	24	95	0	83	17	28	4	50	1.65
11089587--11089632	9	4.5	10	80	20	51	28	2	6	63	1.31
11089587--11089632	20	2.2	20	82	17	51	28	2	6	63	1.31
11098331--11098376	21	2.3	20	82	13	60	34	2	4	58	1.30
11099909--11100039	42	3.1	42	84	2	183	29	41	13	14	1.84
11100105--11100312	36	5.8	36	96	0	371	25	37	18	17	1.93
11100251--11100545	143	2.1	144	96	0	538	27	42	13	16	1.86
11100566--11100659	24	3.9	24	73	5	82	26	43	10	19	1.83
11107003--11107041	16	2.4	16	91	0	60	28	2	7	61	1.37
11106871--11107192	167	1.9	167	89	2	495	30	9	10	50	1.68
11107515--11107541	7	3.9	7	100	0	54	74	11	0	14	1.08
11107604--11107770	80	2.1	80	100	0	334	43	5	8	41	1.59
11127416--11127476	21	3.0	19	81	11	59	54	1	3	40	1.27
11128039--11128103	33	2.0	33	93	0	112	52	7	12	27	1.66
11128025--11128108	33	2.8	29	79	13	96	50	7	15	27	1.70
11128267--11128308	18	2.2	20	83	12	52	42	0	4	52	1.22
11131475--11131587	37	3.1	37	76	13	99	40	1	4	53	1.31
11131475--11131550	11	6.8	11	70	24	52	42	1	2	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11131475--11131570	48	1.9	48	81	6	111	41	2	4	52	1.32
11134743--11134773	16	1.9	16	93	0	53	67	6	0	25	1.14
11135898--11135936	17	2.3	17	81	0	51	38	0	0	61	0.96
11136705--11136758	22	2.3	24	81	9	67	35	1	7	55	1.39
11160120--11160171	23	2.4	21	81	12	61	63	1	1	32	1.16
11160119--11160171	21	2.5	22	81	3	63	64	1	1	32	1.15
11160804--11160894	42	2.2	42	85	0	119	20	35	17	26	1.95
11175307--11175358	24	2.2	24	89	0	77	34	1	11	51	1.49
11179219--11179270	24	2.2	24	92	0	86	36	1	9	51	1.46
11194578--11194615	3	12.7	3	100	0	76	68	0	31	0	0.90
11198750--11198871	52	2.3	54	83	9	153	52	3	2	41	1.31
11203199--11203223	12	2.1	12	100	0	50	52	24	8	16	1.70
11204953--11204996	23	1.9	23	85	0	61	38	13	6	40	1.71
11213475--11213576	45	2.2	46	96	3	188	49	0	8	42	1.34
11213499--11213576	2	40.5	2	74	12	56	48	0	7	43	1.31
11213761--11213794	3	11.3	3	100	0	68	67	0	0	32	0.91
11225189--11225221	18	1.9	17	88	11	50	27	0	0	72	0.85
11234682--11234973	75	3.9	75	80	2	327	20	19	20	40	1.92
11234682--11234960	150	1.9	150	82	0	360	21	18	19	40	1.92
11234915--11235014	39	2.5	39	88	7	157	18	16	24	42	1.89
11234850--11235073	113	2.0	114	89	0	342	20	18	20	40	1.92
11240012--11240040	12	2.3	13	94	5	51	55	0	10	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11242601--11242630	14	2.2	14	94	5	53	76	10	0	13	1.01
11242744--11242769	12	2.2	12	100	0	52	34	7	15	42	1.75
11242756--11242803	19	2.4	20	86	6	62	39	6	14	39	1.71
11242782--11242826	23	2.0	23	86	4	65	40	2	17	40	1.62
11242792--11242836	23	2.0	23	82	4	56	35	2	15	46	1.58
11243106--11243197	3	31.0	3	76	10	55	27	6	4	61	1.39
11248631--11249170	132	4.1	132	92	0	893	28	15	26	29	1.96
11248631--11249172	265	2.0	264	93	1	924	28	15	26	29	1.96
11248631--11249181	44	12.5	44	79	5	526	28	15	26	29	1.96
11249164--11249470	88	3.5	88	95	0	533	28	28	24	19	1.98
11248682--11249297	265	2.3	264	84	5	661	28	18	25	27	1.98
11249174--11249399	44	5.1	44	63	12	131	26	30	24	18	1.98
11249478--11249690	44	4.8	44	85	3	277	27	17	25	28	1.98
11250477--11250502	12	2.2	12	100	0	52	34	7	15	42	1.75
11250489--11250536	19	2.4	20	93	6	80	37	10	14	37	1.81
11250494--11250565	23	3.3	22	84	11	78	38	6	16	37	1.76
11250570--11250608	3	13.0	3	88	0	60	30	2	2	64	1.21
11250695--11250802	33	3.4	32	72	21	93	35	11	1	51	1.48
11250692--11250817	62	2.0	62	86	6	175	34	10	1	53	1.44
11250939--11250996	31	1.9	31	89	3	91	34	3	3	58	1.32
11250937--11251016	28	2.8	27	79	5	70	33	3	5	57	1.38
11251141--11251181	4	10.5	4	80	15	50	24	0	2	73	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11251141--11251177	18	2.1	18	89	0	56	24	0	2	72	0.97
11253879--11253939	30	2.0	30	100	0	122	36	19	9	34	1.85
11254067--11254105	17	2.3	17	86	0	60	25	10	17	46	1.80
11256524--11256588	31	2.1	31	82	5	78	26	1	7	64	1.29
11257627--11257652	11	2.4	11	100	0	52	38	7	0	53	1.30
11259634--11259667	17	1.9	18	88	5	52	2	20	2	73	1.09
11260691--11260730	21	2.0	21	90	5	64	70	5	0	25	1.08
11261980--11262029	12	4.1	12	78	12	57	56	0	4	40	1.18
11262802--11264274	44	32.7	45	74	9	664	30	20	16	32	1.95
11262798--11264274	179	8.2	180	76	9	680	30	20	16	32	1.95
11262972--11264272	228	5.8	224	73	12	551	30	21	16	32	1.95
11262802--11264319	89	16.9	89	79	7	937	30	20	16	32	1.95
11263617--11263869	139	1.8	138	82	4	330	32	21	16	29	1.95
11263179--11264330	590	2.0	590	90	1	1851	29	21	16	32	1.95
11266330--11266694	192	1.9	192	94	0	640	36	25	13	24	1.92
11273433--11273475	15	2.7	16	89	10	70	65	0	0	34	0.93
11275599--11275637	18	2.2	18	90	9	62	35	20	15	28	1.93
11282092--11282142	20	2.6	20	81	3	59	25	19	0	54	1.44
11285410--11285440	15	2.1	15	100	0	62	32	19	12	35	1.90
11285922--11285981	28	2.1	28	90	0	93	55	6	30	8	1.55
11289000--11289049	24	2.1	24	100	0	100	34	12	24	30	1.91
11291791--11291831	3	13.7	3	100	0	82	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11292701--11292846	49	3.0	49	84	3	168	34	26	12	26	1.92
11294374--11294494	23	5.3	23	76	4	118	33	24	19	23	1.97
11294374--11294494	46	2.6	46	85	2	145	33	24	19	23	1.97
11307276--11307352	29	2.5	31	87	4	104	46	12	14	25	1.80
11318232--11318294	3	21.0	3	100	0	126	33	0	0	66	0.92
11329576--11329721	44	3.2	46	69	20	128	46	2	2	49	1.25
11329579--11329746	91	1.8	91	96	0	309	47	2	2	47	1.30
11329839--11330008	37	4.7	35	67	20	100	42	1	7	48	1.40
11329631--11330037	222	1.8	226	83	8	553	44	2	4	48	1.36
11329832--11330047	107	2.0	109	95	1	391	43	1	6	49	1.38
11330004--11330045	15	2.7	16	82	14	52	45	0	2	52	1.13
11329995--11330036	15	2.9	15	82	10	52	47	0	0	52	1.00
11330190--11330279	45	2.0	44	89	6	137	33	28	5	32	1.80
11330259--11330291	16	2.1	16	100	0	66	21	36	6	36	1.78
11331763--11331818	18	2.9	19	73	26	55	48	0	0	51	1.00
11331828--11331870	14	3.0	15	80	10	54	55	0	0	44	0.99
11331826--11331931	15	6.5	15	69	25	72	50	0	0	47	1.13
11334969--11335019	25	2.0	25	85	7	68	23	0	3	72	1.01
11336960--11336999	16	2.4	16	87	4	53	37	0	0	62	0.95
11344313--11344347	18	2.0	17	94	5	61	57	0	0	42	0.99
11345160--11345194	18	2.0	17	94	5	61	42	0	0	57	0.99
11347213--11347551	120	2.8	121	85	2	466	22	16	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11359841--11359875	18	1.9	18	88	11	54	42	11	0	45	1.40
11366417--11366443	14	1.9	14	100	0	54	37	0	0	62	0.95
11366729--11366803	29	2.5	28	82	8	78	30	16	12	41	1.84
11366747--11366843	29	3.2	30	77	11	92	34	12	15	38	1.85
11370547--11370589	13	3.2	13	81	12	50	39	2	9	48	1.48
11375077--11375145	31	2.2	31	89	0	111	46	8	10	34	1.69
11391162--11391194	17	1.9	17	93	0	57	27	12	3	57	1.49
11391668--11391693	3	8.7	3	100	0	52	65	0	0	34	0.93
11393735--11393759	7	3.6	7	100	0	50	88	0	0	12	0.53
11409217--11409241	9	2.8	9	100	0	50	24	0	16	60	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199