genome.fa.s20.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  153  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45251017--45251109	25	3.8	24	80	11	98	34	18	23	23	1.96
45250986--45251105	50	2.4	48	81	4	123	32	19	21	26	1.97
45252031--45252073	11	3.8	12	80	20	56	27	30	0	41	1.56
45253887--45253926	18	2.2	18	95	0	71	22	30	7	40	1.81
45254401--45254456	25	2.3	24	93	3	94	39	0	14	46	1.44
45254346--45254433	45	2.0	45	90	0	140	37	0	11	51	1.38
45254356--45254565	64	3.1	66	86	6	246	35	2	12	49	1.55
45254379--45254576	64	3.0	64	88	5	263	34	3	13	48	1.59
45257583--45257955	124	3.0	124	88	2	547	33	22	14	30	1.94
45260774--45260835	19	3.3	19	81	2	72	41	1	6	50	1.38
45262531--45262621	36	2.5	36	83	0	101	25	35	16	23	1.95
45268147--45268184	3	12.7	3	100	0	76	68	0	31	0	0.90
45276287--45276494	57	3.6	53	67	22	125	43	1	3	51	1.29
45276313--45276372	26	2.4	23	76	10	57	43	1	1	53	1.20
45276432--45276473	15	2.7	16	82	14	52	45	0	2	52	1.13
45276423--45276464	15	2.9	15	82	10	52	47	0	0	52	1.00
45276601--45276705	44	2.5	40	76	15	113	31	29	4	34	1.78
45276599--45276706	45	2.5	44	81	8	127	31	28	5	34	1.80
45286630--45286731	47	2.2	46	85	5	134	25	22	16	35	1.95
45286630--45286752	46	2.6	47	83	6	151	26	21	17	34	1.95
45287853--45287902	3	16.7	3	100	0	100	34	0	0	66	0.92
45297178--45297268	42	2.2	42	93	0	155	13	36	27	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45298060--45298120	6	10.3	6	87	3	88	81	0	14	3	0.80
45298060--45298120	18	3.4	18	95	2	106	81	0	14	3	0.80
45300111--45300151	21	2.0	21	95	0	73	21	17	36	24	1.94
45300113--45300159	21	2.2	21	88	0	67	19	19	38	23	1.93
45301792--45301832	21	2.0	20	86	9	57	31	0	4	63	1.15
45309689--45309730	21	2.0	20	86	13	59	38	9	23	28	1.86
45310694--45310726	17	2.1	17	88	11	52	15	3	0	81	0.80
45311172--45311196	12	2.1	12	100	0	50	76	0	16	8	1.02
45312359--45312391	16	2.0	17	88	5	50	48	0	12	39	1.40
45322702--45322754	4	13.2	4	100	0	106	26	0	24	49	1.51
45324722--45324780	29	2.0	30	86	3	84	45	16	11	25	1.82
45325456--45325515	31	2.0	31	83	9	79	50	20	8	21	1.74
45325558--45325599	21	2.0	21	95	0	75	23	16	28	30	1.96
45325659--45325719	29	2.1	30	85	14	83	34	14	4	45	1.67
45326155--45326185	3	10.7	3	93	6	55	67	0	32	0	0.91
45326155--45326181	14	1.9	14	100	0	54	66	0	33	0	0.92
45331176--45331204	12	2.3	13	94	5	51	68	0	17	13	1.20
45339111--45339162	21	2.5	20	72	9	52	48	0	1	50	1.12
45340355--45340383	4	7.2	4	100	0	58	75	0	0	24	0.80
45351122--45351154	15	2.2	15	94	0	57	3	9	0	87	0.63
45364859--45364900	22	1.9	22	90	9	68	42	2	0	54	1.13
45367221--45367271	20	2.4	22	80	6	61	54	3	0	41	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45369241--45369513	46	5.9	46	86	1	361	31	26	15	26	1.96
45369522--45370428	131	6.9	130	70	11	457	27	22	20	29	1.99
45369498--45370818	218	6.1	218	94	0	2176	28	21	20	29	1.98
45369523--45371208	87	19.4	85	68	14	383	28	21	19	30	1.98
45370664--45371205	129	4.2	129	91	0	836	29	21	18	30	1.97
45369518--45371251	44	39.8	44	69	10	299	28	21	19	29	1.98
45371065--45371399	175	1.9	175	90	0	535	29	21	18	30	1.97
45372625--45372671	7	7.0	7	83	9	62	14	14	0	70	1.18
45372625--45372671	13	3.5	14	82	8	62	14	14	0	70	1.18
45372625--45372671	20	2.3	20	92	0	76	14	14	0	70	1.18
45373673--45373724	12	4.3	12	82	0	50	13	9	5	71	1.30
45373673--45373724	18	2.9	18	79	0	59	13	9	5	71	1.30
45378205--45378255	20	2.4	22	80	6	61	54	3	0	41	1.19
45385310--45385518	92	2.3	91	85	5	269	45	3	4	46	1.39
45385446--45385493	26	1.9	25	84	16	64	45	0	2	52	1.12
45385572--45385782	66	3.4	63	69	21	183	42	3	5	48	1.43
45385608--45385791	59	3.1	59	66	20	164	43	2	5	48	1.39
45385534--45385826	120	2.4	120	93	3	493	43	2	4	49	1.37
45385659--45385710	15	3.6	15	80	12	56	44	0	1	53	1.11
45385596--45385781	61	3.1	61	67	17	179	42	2	6	48	1.43
45385788--45385829	15	2.7	16	82	14	52	45	0	2	52	1.13
45385779--45385820	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45385767--45386036	88	3.2	87	66	18	237	47	3	3	45	1.35
45385763--45386058	163	1.8	163	96	0	556	48	3	3	44	1.36
45385938--45385971	18	1.9	18	88	5	52	47	0	0	52	1.00
45386210--45386245	16	2.2	16	95	0	63	38	33	0	27	1.57
45392159--45392193	16	2.2	16	100	0	70	31	0	20	48	1.50
45395437--45395477	18	2.3	18	86	0	55	31	0	46	21	1.52
45396400--45396438	14	2.9	14	88	3	53	58	0	0	41	0.98
45396401--45396441	13	3.1	13	86	6	55	56	0	0	43	0.99
45399684--45399742	21	2.8	21	97	0	109	3	42	18	35	1.67
45399725--45399871	66	2.2	66	90	4	226	12	29	18	39	1.88
45399725--45399895	66	2.6	65	87	4	218	12	28	19	39	1.88
45404905--45404958	27	2.0	27	100	0	108	33	18	14	33	1.92
45405324--45405527	9	23.8	9	69	16	130	30	1	20	46	1.62
45405327--45405379	16	3.1	17	81	13	65	28	0	22	49	1.50
45405388--45405521	16	8.0	16	74	13	69	32	1	19	47	1.59
45405399--45405469	25	3.0	25	76	8	60	30	1	19	47	1.58
45405396--45405498	41	2.5	41	90	0	152	32	1	20	45	1.62
45405482--45405520	20	2.0	19	95	5	69	30	0	15	53	1.42
45405574--45406011	121	3.6	121	96	1	817	44	6	8	40	1.60
45406008--45406116	23	5.3	23	69	26	75	45	0	8	45	1.33
45406041--45406129	18	4.8	18	79	14	101	41	0	12	46	1.41
45405589--45406045	240	1.9	239	91	3	731	45	6	7	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45406043--45406147	31	3.5	31	71	21	100	42	0	13	43	1.43
45406170--45406261	13	6.9	13	74	18	91	43	1	9	45	1.44
45406025--45406278	40	6.5	39	75	13	211	42	1	11	45	1.47
45407437--45407468	12	2.7	12	95	0	55	68	15	9	6	1.36
45407722--45407767	21	2.2	21	100	0	92	56	21	4	17	1.58
45408494--45408722	83	2.7	85	74	6	207	36	17	15	29	1.91
45409671--45409708	7	5.4	7	87	0	58	31	47	2	18	1.62
45409700--45409740	21	2.0	21	85	4	57	36	41	2	19	1.65
45409876--45409900	9	2.8	9	100	0	50	60	0	0	40	0.97
45410660--45410899	41	5.8	42	84	4	258	32	26	20	21	1.98
45411220--45411270	18	3.1	16	76	13	50	62	0	1	35	1.06
45417835--45417867	17	1.9	17	93	0	57	9	6	21	63	1.45
45417989--45418110	4	30.2	4	87	4	111	10	46	0	42	1.38
45422569--45422598	12	2.5	12	94	0	51	16	20	0	63	1.31
45424805--45424941	72	1.9	72	83	0	175	24	15	11	48	1.78
45424856--45425042	60	2.9	61	77	8	160	22	17	12	47	1.81
45432998--45433030	16	2.1	16	100	0	66	18	12	36	33	1.88
45435324--45435365	14	3.1	13	86	13	50	45	0	7	47	1.30
45435324--45435365	19	2.3	18	84	8	57	45	0	7	47	1.30
45438416--45438455	13	3.1	13	79	13	55	30	5	27	37	1.78
45442428--45442537	50	2.2	49	80	12	118	54	14	8	22	1.66
45445275--45445326	27	2.0	26	85	11	70	46	3	0	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45445350--45445393	22	2.0	22	95	0	79	61	0	0	38	0.96
45445368--45445397	16	1.9	15	93	6	51	60	0	0	40	0.97
45445413--45445454	13	2.9	14	80	13	50	52	0	2	45	1.13
45445488--45445535	19	2.6	19	77	6	55	50	2	0	47	1.12
45448976--45449027	24	2.2	24	89	0	77	55	9	1	32	1.43
45451578--45451632	28	2.0	28	83	16	71	50	1	1	45	1.22
45452448--45452492	19	2.4	19	80	0	54	28	6	4	60	1.42
45452913--45452988	27	2.8	28	80	8	84	46	2	0	51	1.15
45468133--45468189	29	2.0	29	89	3	89	54	7	0	38	1.28
45468568--45468633	19	3.5	19	79	4	89	37	10	1	50	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199