genome.fa.s20.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  155  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45710011--45710154	52	2.7	51	81	13	141	45	17	0	36	1.53
45710074--45710098	13	1.9	13	100	0	50	48	16	0	36	1.46
45709999--45710122	61	2.0	62	81	10	148	47	17	0	33	1.54
45710083--45710125	12	4.0	11	80	14	54	46	11	0	41	1.40
45710074--45710149	32	2.3	31	82	15	89	43	14	0	42	1.45
45709803--45710253	220	2.1	218	92	3	753	46	19	1	33	1.57
45710142--45710254	25	4.5	25	84	0	145	46	20	1	31	1.61
45710142--45710264	50	2.4	50	87	2	174	44	21	2	31	1.65
45712674--45712732	21	2.8	21	94	0	100	32	15	45	6	1.72
45713084--45713319	43	5.5	43	83	5	282	21	20	31	26	1.98
45713379--45713422	22	2.0	22	90	0	70	43	25	20	11	1.85
45714376--45714408	17	1.9	17	93	0	57	45	3	0	51	1.16
45715063--45715142	27	3.0	27	90	1	126	20	22	35	22	1.96
45715197--45715250	22	2.5	21	88	5	90	66	1	31	0	1.02
45720223--45720264	16	2.7	15	85	7	57	57	2	2	38	1.25
45720376--45720449	38	1.9	38	94	0	130	40	2	4	52	1.34
45720672--45720958	21	13.0	20	69	22	134	54	12	0	32	1.43
45720645--45720843	27	8.0	27	74	20	193	53	12	1	33	1.45
45720592--45720835	95	2.6	94	88	3	328	53	13	0	31	1.46
45720592--45720839	48	5.2	48	84	4	326	53	14	0	31	1.46
45720590--45720958	21	16.4	20	67	25	129	54	13	0	31	1.43
45720872--45720958	20	4.2	21	82	11	99	57	11	0	31	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45721126--45721169	3	15.3	3	86	9	65	0	36	0	63	0.95
45721122--45721170	14	3.6	14	89	10	75	0	36	0	63	0.95
45721126--45721169	20	2.2	20	95	0	79	0	36	0	63	0.95
45721128--45721173	14	3.2	15	93	6	78	0	39	0	60	0.97
45721124--45721181	17	3.6	16	82	15	75	0	37	0	62	0.96
45721132--45721181	14	3.6	13	86	10	64	0	38	0	62	0.96
45727668--45727704	17	2.1	18	90	5	58	37	5	10	45	1.62
45730677--45730734	27	2.1	28	84	9	75	60	13	8	17	1.58
45733423--45733528	42	2.5	42	80	3	124	25	14	23	36	1.92
45733616--45733729	24	4.8	24	72	16	85	31	20	22	25	1.98
45733615--45733729	48	2.4	48	78	8	128	32	20	22	25	1.98
45734852--45734881	15	2.0	15	100	0	60	46	13	20	20	1.83
45737067--45737115	26	2.0	24	84	11	64	61	12	10	16	1.57
45740638--45740689	24	2.2	24	86	6	70	46	5	32	15	1.70
45744571--45744631	26	2.3	26	83	5	79	39	14	13	32	1.85
45746335--45746364	14	2.2	13	94	5	51	46	6	0	46	1.29
45754460--45754513	20	2.7	20	82	0	63	48	0	25	25	1.52
45757177--45757219	18	2.4	18	92	0	68	20	27	9	41	1.83
45757457--45757497	21	2.0	21	95	0	73	31	53	14	0	1.41
45760717--45760981	126	2.1	126	84	6	349	27	16	18	38	1.91
45761227--45761291	29	2.3	28	89	5	105	50	21	0	27	1.49
45762525--45762556	4	8.0	4	92	0	55	0	71	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45762526--45762564	12	3.2	12	88	0	60	0	66	0	33	0.92
45762526--45762569	12	3.7	12	87	0	52	0	63	0	36	0.95
45762583--45762816	99	2.4	94	90	5	301	29	40	16	13	1.86
45762609--45762816	99	2.1	99	95	0	371	31	39	15	12	1.85
45771695--45771738	24	1.9	24	90	9	74	36	0	2	61	1.09
45771835--45771871	9	4.1	9	100	0	74	56	10	0	32	1.34
45771805--45772005	68	2.8	77	84	14	316	46	9	4	39	1.58
45771844--45772023	68	2.7	68	96	1	328	47	8	4	39	1.55
45771912--45771939	9	3.1	9	100	0	56	57	10	0	32	1.33
45772012--45772053	16	2.6	16	92	0	66	42	7	0	50	1.30
45772027--45772082	23	2.5	23	82	2	69	44	1	0	53	1.11
45771844--45772045	68	3.1	65	88	8	281	47	8	3	39	1.53
45778291--45778337	22	2.1	23	84	4	60	31	2	0	65	1.04
45782218--45782259	22	1.9	22	90	0	66	52	0	4	42	1.22
45786576--45786633	19	3.4	19	68	26	65	39	10	5	44	1.61
45788986--45789026	21	2.0	21	90	0	64	63	4	0	31	1.15
45790952--45791021	36	1.9	36	88	11	108	10	4	28	57	1.50
45791267--45791310	22	2.0	22	90	0	70	9	13	27	50	1.72
45791341--45791553	43	5.0	43	87	1	322	23	29	18	28	1.98
45794516--45794616	28	3.6	28	87	1	150	34	11	21	31	1.90
45795319--45795816	70	7.1	70	91	0	744	27	12	16	43	1.83
45795321--45795805	23	20.7	24	70	12	255	27	12	15	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45795344--45795871	70	7.5	72	90	1	407	28	11	16	43	1.83
45800386--45800658	25	11.0	25	75	12	167	32	2	19	45	1.63
45800402--45800483	34	2.4	34	89	0	119	26	1	25	46	1.60
45800386--45800663	9	32.3	9	72	15	178	32	2	19	45	1.63
45800511--45800718	34	6.3	34	70	19	129	37	1	15	45	1.56
45800584--45800694	30	3.6	29	74	21	100	37	0	14	46	1.51
45800570--45800718	64	2.3	65	87	5	214	38	0	14	46	1.50
45800633--45800740	48	2.2	48	87	6	148	38	0	12	47	1.49
45800843--45800901	30	1.9	31	93	3	102	40	5	13	40	1.67
45806009--45806095	45	1.9	45	95	0	156	25	19	21	33	1.97
45808471--45808631	7	22.1	7	67	13	67	37	37	3	20	1.71
45808540--45808620	29	2.8	30	78	14	89	35	38	4	20	1.75
45808564--45808631	22	3.1	21	77	6	64	35	41	4	19	1.71
45808650--45808694	13	3.4	13	84	6	63	53	33	0	13	1.40
45809298--45809618	167	1.9	166	83	5	416	25	22	19	32	1.97
45812251--45812422	44	3.9	44	86	0	227	38	10	25	25	1.88
45812640--45812713	27	2.7	27	79	8	78	40	17	24	17	1.91
45815468--45815519	28	1.9	27	84	7	70	38	21	1	38	1.64
45815679--45815859	57	3.1	57	84	1	236	28	19	6	45	1.74
45817450--45817487	18	2.1	18	90	0	58	42	0	2	55	1.14
45818831--45818858	14	2.0	14	100	0	56	42	14	0	42	1.45
45821259--45821308	24	2.1	24	88	0	73	22	8	20	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45823766--45823858	30	3.1	30	92	0	150	56	13	4	24	1.55
45823888--45823934	22	2.1	22	84	0	58	55	12	12	19	1.69
45825491--45825536	22	2.1	22	84	8	58	30	21	26	21	1.99
45825741--45825770	13	2.3	13	100	0	60	43	26	0	30	1.55
45834559--45834727	49	3.5	48	73	8	135	33	18	23	24	1.97
45834556--45834741	98	1.9	98	83	2	239	34	17	23	24	1.96
45837119--45837199	36	2.2	36	82	0	90	44	18	6	30	1.74
45842003--45842087	40	2.1	41	88	2	127	60	5	1	32	1.29
45847503--45847540	18	2.1	18	100	0	76	36	5	21	36	1.76
45850306--45850400	41	2.3	41	94	0	163	22	15	37	24	1.93
45850306--45850411	41	2.6	41	90	0	149	20	15	39	24	1.91
45852504--45852534	15	2.1	15	100	0	62	35	6	32	25	1.82
45854791--45854861	31	2.3	31	85	2	90	32	7	16	43	1.75
45854984--45855106	43	3.0	40	83	3	138	26	17	28	27	1.97
45862071--45862105	15	2.3	15	90	5	52	57	5	2	34	1.37
45870399--45870446	3	16.7	3	86	4	64	29	2	0	68	1.01
45870989--45871037	23	2.1	24	81	11	57	26	14	4	55	1.57
45875529--45875691	6	27.2	6	81	4	114	20	9	14	55	1.67
45875529--45875691	12	13.1	12	79	7	155	20	9	14	55	1.67
45875529--45875704	18	9.4	18	77	7	154	21	9	14	55	1.67
45880723--45880752	5	6.0	5	100	0	60	40	0	60	0	0.97
45907186--45907254	22	3.1	22	80	13	63	66	0	8	24	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45909690--45909748	31	1.9	31	85	0	82	50	8	5	35	1.55
45910231--45910272	20	2.0	21	90	4	68	30	0	4	64	1.14
45912206--45912348	50	2.9	51	80	10	145	34	18	27	20	1.95
45912226--45912359	50	2.7	50	82	6	148	32	19	28	19	1.96
45912177--45912359	25	7.4	26	71	9	123	32	19	27	21	1.97
45912684--45912725	21	2.0	21	85	0	57	42	19	0	38	1.51
45918158--45918312	25	6.3	25	76	13	126	33	19	28	18	1.96
45918158--45918326	75	2.3	74	81	10	193	33	19	27	18	1.96
45918158--45918334	25	7.2	24	75	14	114	34	19	27	18	1.95
45920304--45920375	28	2.7	27	81	12	69	44	0	4	51	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199