genome.fa.s20.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  156  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45923613--45923656	22	2.0	22	86	8	63	61	0	4	34	1.16
45926175--45926253	38	2.1	38	90	0	122	30	18	15	35	1.92
45926186--45926282	38	2.6	38	84	0	113	31	15	15	37	1.89
45934602--45934875	139	2.0	139	96	0	503	31	19	27	21	1.97
45940819--45940922	52	2.0	52	94	0	181	29	46	6	17	1.74
45940843--45940922	23	3.2	23	66	19	61	31	48	6	13	1.67
45943398--45943432	15	2.3	16	85	14	56	48	0	17	34	1.47
45947842--45947875	17	1.9	18	94	5	61	52	17	0	29	1.45
45948093--45948215	42	3.0	41	82	8	151	34	25	13	26	1.93
45949690--45949737	17	2.8	17	83	3	60	18	29	35	16	1.93
45954735--45954773	20	2.0	20	85	10	53	30	17	10	41	1.83
45969757--45969789	16	2.0	16	94	5	57	54	0	0	45	0.99
45972686--45972720	5	7.0	5	100	0	70	40	40	0	20	1.52
45976524--45976555	16	1.9	17	93	6	57	50	6	0	43	1.27
45976523--45976564	17	2.5	16	84	7	57	52	4	2	40	1.35
45976732--45976767	18	2.0	18	89	10	56	77	0	0	22	0.76
45976962--45977012	27	1.9	27	84	4	68	41	17	0	41	1.50
45977043--45977107	18	3.4	18	74	14	67	53	9	7	29	1.60
45978492--45978524	16	2.1	16	100	0	66	36	12	18	33	1.88
45980969--45981033	33	2.0	33	84	6	87	32	7	16	43	1.77
45981832--45981862	16	2.0	16	93	6	55	80	0	0	19	0.71
45981832--45981862	5	6.0	5	92	7	53	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45986447--45986490	21	2.0	23	82	13	56	20	22	45	11	1.83
45986741--45986789	9	5.4	9	88	9	73	40	22	10	26	1.86
45986990--45987106	39	3.0	39	89	1	182	18	3	28	49	1.64
45987087--45987111	13	1.9	13	100	0	50	12	0	48	40	1.40
45987695--45987728	16	2.2	15	89	5	50	55	2	0	41	1.15
45987795--45987850	29	1.9	29	85	7	78	51	14	7	26	1.67
45997543--45997568	4	6.5	4	100	0	52	50	0	0	50	1.00
45998514--45998593	29	2.7	30	76	5	92	35	23	16	25	1.95
46009756--46009849	36	2.6	36	93	0	152	19	12	44	23	1.85
46009833--46009942	33	3.3	33	87	2	141	24	9	51	14	1.71
46009887--46009941	15	3.5	15	72	13	56	29	9	50	10	1.68
46009872--46009930	18	3.5	17	71	15	59	27	5	50	16	1.66
46014354--46014397	22	2.0	22	100	0	88	22	9	22	45	1.80
46022293--46022331	20	2.0	19	90	5	60	51	15	0	33	1.44
46025204--46025274	34	2.1	35	83	2	90	28	15	12	43	1.83
46027885--46027915	16	1.9	16	93	0	53	45	3	0	51	1.17
46028157--46028186	15	2.0	15	93	0	51	63	0	0	36	0.95
46028217--46028250	18	1.9	18	88	5	52	44	5	2	47	1.42
46034779--46034813	9	3.9	9	88	0	52	68	2	0	28	1.04
46036147--46036194	23	2.1	23	84	0	60	18	4	35	41	1.70
46036340--46036447	42	2.6	40	89	2	153	21	23	3	51	1.63
46042745--46042778	17	1.9	18	88	5	52	38	11	5	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46045660--46045724	32	2.1	32	94	2	114	29	9	13	47	1.74
46046268--46046319	10	5.1	10	77	13	61	78	11	9	0	0.95
46046277--46046368	19	4.9	18	72	12	71	76	10	13	0	1.03
46049506--46049570	32	2.1	32	97	2	123	30	9	12	47	1.72
46049873--46049903	4	8.0	4	92	7	55	25	0	0	74	0.82
46065204--46065240	18	2.0	19	89	5	58	2	62	0	35	1.10
46065202--46065243	18	2.4	17	84	11	57	2	57	0	40	1.12
46065725--46065757	10	3.0	11	91	8	50	0	9	0	90	0.44
46069588--46069691	43	2.5	42	90	1	154	26	15	28	28	1.96
46069579--46069743	43	3.9	42	75	12	149	29	14	25	30	1.95
46072239--46072367	69	1.9	69	91	1	215	20	24	5	49	1.69
46072504--46072559	21	2.6	21	91	5	85	21	30	1	46	1.62
46089664--46089830	90	1.9	90	81	7	205	35	14	20	28	1.92
46089628--46089848	90	2.5	91	71	10	204	36	13	20	29	1.90
46099637--46100118	238	2.0	239	94	1	842	32	13	22	31	1.93
46101569--46101698	56	2.3	54	75	12	127	39	2	3	54	1.31
46103544--46103724	49	3.5	50	79	7	159	28	21	26	23	1.99
46103596--46103735	49	2.8	50	80	2	165	27	21	27	22	1.99
46103549--46103782	49	4.6	50	77	6	143	29	21	26	23	1.99
46105598--46105630	16	2.1	16	94	0	57	6	0	21	72	1.05
46110859--46110927	31	2.2	31	92	0	111	40	14	14	30	1.86
46111394--46111428	11	3.2	11	91	0	61	17	34	2	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46111394--46111444	22	2.3	22	86	6	68	23	33	1	41	1.66
46111408--46111505	51	1.9	51	87	4	144	26	25	2	45	1.64
46113846--46113885	7	5.9	7	85	14	57	47	0	0	52	1.00
46114040--46114093	15	3.8	15	71	14	60	46	29	0	24	1.53
46113902--46114063	22	7.5	22	89	2	231	44	29	1	25	1.62
46113910--46114070	86	1.9	87	89	3	256	42	29	1	26	1.63
46113902--46114093	64	3.0	63	81	8	185	44	29	1	25	1.61
46113902--46114092	22	8.6	22	82	7	199	44	29	1	25	1.61
46113902--46114093	86	2.2	84	83	10	213	44	29	1	25	1.61
46114105--46114139	18	1.9	18	88	0	52	48	34	0	17	1.47
46114142--46114367	53	4.2	53	77	10	249	46	7	6	40	1.56
46114244--46114374	43	2.9	46	74	19	132	48	7	3	39	1.50
46117373--46117677	124	2.4	125	90	1	479	30	20	18	30	1.96
46117805--46117850	22	2.1	21	88	4	65	50	32	0	17	1.47
46119690--46119743	27	2.0	27	96	0	99	31	12	22	33	1.92
46122405--46122469	32	2.0	32	100	0	130	27	3	24	44	1.68
46126487--46126524	16	2.4	16	86	0	58	44	2	5	47	1.39
46127553--46127609	25	2.2	24	82	14	69	45	3	3	47	1.37
46129110--46129155	3	15.3	3	86	0	65	60	2	4	32	1.28
46129252--46129305	23	2.3	23	83	0	72	57	3	7	31	1.44
46129222--46129438	3	73.3	3	66	16	51	61	5	8	25	1.45
46130591--46130659	35	2.0	35	97	0	129	20	10	50	18	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46131578--46131624	20	2.3	21	78	10	53	61	23	4	10	1.46
46132023--46132049	2	13.5	2	100	0	54	51	48	0	0	1.00
46132626--46132706	3	27.7	3	75	14	71	27	3	2	66	1.21
46132614--46132672	20	3.1	18	70	27	50	23	6	1	67	1.24
46132622--46132707	22	4.2	20	75	14	63	26	3	2	67	1.19
46132668--46132704	19	1.9	19	94	0	65	29	0	5	64	1.15
46133033--46133085	26	2.0	26	82	7	63	20	1	7	69	1.22
46133210--46133524	110	2.9	110	87	0	427	31	14	19	34	1.92
46134783--46134834	25	2.1	25	82	7	61	42	0	0	57	0.98
46148852--46148898	25	1.9	25	87	12	71	53	4	4	38	1.40
46149662--46149717	26	2.1	27	90	6	87	33	3	10	51	1.54
46149639--46149717	14	5.6	14	74	14	72	35	3	11	49	1.57
46150309--46150367	23	2.4	26	76	18	72	45	1	8	44	1.44
46150698--46150871	9	18.9	9	65	21	67	67	1	4	26	1.20
46150802--46150846	19	2.4	19	88	0	63	66	4	2	26	1.22
46154838--46154878	22	1.9	21	85	5	55	51	2	2	43	1.28
46160085--46160126	3	14.0	3	100	0	84	66	0	33	0	0.92
46161923--46161969	20	2.1	24	81	14	57	46	0	2	51	1.13
46163857--46163898	16	2.6	16	80	0	57	14	0	26	59	1.35
46164523--46164844	96	3.4	96	81	10	394	38	17	1	42	1.59
46164554--46164830	92	3.0	92	85	7	373	38	17	1	42	1.58
46164523--46164892	188	2.0	188	79	6	401	40	19	1	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46175837--46175894	26	2.2	26	81	6	64	17	20	24	37	1.93
46175947--46176087	24	5.8	25	72	9	103	21	23	19	36	1.95
46177412--46177467	24	2.3	24	81	0	67	19	19	17	42	1.89
46188766--46188807	21	2.0	21	81	9	50	45	2	11	40	1.54
46189308--46189362	25	2.3	23	78	12	58	21	23	20	34	1.97
46191856--46191907	27	2.0	25	85	7	68	30	23	11	34	1.90
46195936--46196249	138	2.3	138	93	1	531	24	16	23	35	1.94
46198445--46198483	19	1.9	19	90	10	60	76	0	20	2	0.90
46202570--46202604	16	2.2	16	94	0	61	57	0	5	37	1.23
46203072--46203143	21	3.6	19	74	20	58	29	8	2	59	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199