genome.fa.s20.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  166  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48673929--48673988	22	2.7	23	73	19	63	66	6	0	26	1.16
48673938--48673971	4	8.0	4	90	9	50	73	2	0	23	0.97
48679204--48679280	30	2.6	30	78	12	88	55	3	14	25	1.56
48680749--48680789	19	2.2	18	86	4	55	26	7	12	53	1.64
48687060--48687116	15	3.7	15	73	21	55	21	17	0	61	1.35
48687060--48687117	30	1.9	31	89	3	91	20	17	0	62	1.33
48691354--48691430	21	3.9	20	76	23	74	15	0	25	58	1.38
48691355--48691439	21	4.2	21	73	21	65	16	0	25	57	1.39
48692870--48692904	16	2.2	16	100	0	70	42	25	5	25	1.77
48715100--48715143	21	2.0	23	86	8	65	31	0	2	65	1.05
48728828--48728868	22	1.9	22	85	14	59	48	0	2	48	1.14
48730424--48730489	31	2.1	31	85	0	87	48	19	12	19	1.80
48730740--48730770	2	15.5	2	100	0	62	0	48	0	51	1.00
48736414--48736450	3	12.3	3	94	0	65	29	0	2	67	1.04
48761564--48762011	80	5.4	79	72	17	350	30	18	23	27	1.98
48761469--48762084	170	3.6	170	92	0	966	30	19	22	26	1.98
48761473--48762058	44	13.7	45	70	14	336	30	19	22	26	1.98
48763592--48763631	3	13.3	3	94	0	71	30	0	2	67	1.04
48769148--48769187	20	2.0	20	85	0	53	52	2	12	32	1.52
48774533--48774598	31	2.1	31	85	0	87	45	19	15	19	1.85
48777908--48777950	15	2.8	15	83	16	61	37	2	4	55	1.33
48778271--48778305	18	1.9	18	94	0	61	28	8	0	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48778305--48778334	13	2.4	13	94	5	53	46	0	6	46	1.29
48782726--48782763	17	2.2	17	100	0	76	39	5	28	26	1.78
48783760--48783831	36	2.0	36	97	0	135	26	19	16	37	1.93
48786076--48786141	31	2.1	31	85	0	87	48	19	10	21	1.79
48793761--48793799	3	13.3	3	89	5	62	69	0	0	30	0.89
48794861--48794918	17	3.6	16	72	11	55	32	1	0	65	1.03
48794863--48794924	32	1.9	32	86	0	88	32	3	1	62	1.20
48794879--48794966	40	2.2	40	83	4	104	34	4	4	56	1.40
48794865--48794966	40	2.6	38	81	10	100	32	3	3	59	1.34
48797241--48797275	14	2.4	15	90	4	54	5	0	20	74	1.02
48803721--48803755	18	1.9	18	88	0	52	22	5	51	20	1.68
48809436--48809463	6	4.7	6	100	0	56	14	14	0	71	1.15
48813587--48813639	22	2.4	22	84	6	72	33	32	0	33	1.58
48813673--48813728	28	2.0	28	89	6	87	39	0	1	58	1.08
48813690--48813729	20	2.0	21	85	9	57	42	0	0	57	0.98
48813675--48813735	28	2.1	28	85	8	79	39	0	1	59	1.08
48813819--48813852	15	2.3	15	90	5	52	26	0	5	67	1.13
48814809--48814847	7	5.6	7	100	0	78	28	0	12	58	1.34
48817045--48817141	23	4.2	23	93	0	167	22	21	26	28	1.99
48817043--48817141	46	2.2	46	96	0	189	23	21	26	29	1.99
48818682--48819185	29	17.6	29	79	14	503	43	23	1	31	1.62
48818682--48819185	58	8.8	58	84	11	558	43	23	1	31	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48818834--48818919	40	2.1	41	86	2	120	39	34	1	24	1.63
48819353--48819407	25	2.2	25	100	0	110	38	20	5	36	1.75
48822380--48822655	125	2.2	126	88	3	407	32	21	15	30	1.95
48833282--48833306	12	2.1	12	100	0	50	52	16	8	24	1.70
48845171--48845301	37	3.5	37	81	4	165	18	13	25	42	1.87
48850681--48850716	19	1.9	18	88	5	54	58	0	0	41	0.98
48851162--48851195	17	2.0	17	88	0	50	52	2	0	44	1.16
48858495--48858543	21	2.5	19	80	9	55	61	10	4	24	1.45
48859025--48859059	17	2.1	17	94	0	61	54	11	2	31	1.51
48859214--48859278	17	3.8	17	77	0	58	20	41	23	15	1.89
48863997--48864045	22	2.2	22	88	0	71	34	18	16	30	1.93
48865699--48865759	30	2.0	30	90	6	97	24	16	24	34	1.95
48868047--48868085	18	2.2	17	86	13	53	33	0	20	46	1.51
48868312--48868402	23	4.0	23	91	0	155	19	23	25	31	1.98
48870049--48870111	26	2.4	26	86	0	81	25	23	9	41	1.85
48870063--48870134	26	2.8	26	86	0	99	26	16	13	43	1.86
48876818--48876864	5	9.2	5	80	13	51	38	14	25	21	1.92
48882127--48882176	20	2.6	19	78	6	55	38	2	2	58	1.21
48892345--48892387	20	2.1	20	83	12	52	51	6	6	34	1.56
48892760--48892793	16	2.1	16	88	5	50	41	8	0	50	1.34
48893816--48893874	31	1.9	31	96	0	109	18	23	11	45	1.83
48897255--48897293	18	2.2	18	100	0	78	41	10	5	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48901155--48901203	7	7.0	7	78	17	57	30	14	2	53	1.52
48901155--48901211	21	2.8	20	83	5	69	29	17	1	50	1.56
48901155--48901209	14	3.9	15	79	13	62	30	18	1	49	1.58
48901361--48901407	24	2.0	24	83	8	60	29	0	10	59	1.31
48910939--48912912	276	7.2	276	76	3	1371	31	25	16	27	1.96
48911465--48911664	69	2.9	69	71	5	172	32	25	16	26	1.96
48912356--48912559	69	3.0	67	73	4	174	31	26	15	26	1.96
48910924--48912892	138	14.3	138	75	4	1200	31	25	16	27	1.96
48916311--48916365	21	2.6	21	88	0	74	20	41	21	16	1.90
48917454--48917496	13	3.3	13	80	0	50	39	20	2	37	1.66
48917389--48917496	53	2.1	52	82	5	128	36	20	2	40	1.67
48918474--48918510	13	2.8	13	95	0	65	21	29	5	43	1.75
48925367--48925412	17	2.7	17	86	0	65	19	26	26	28	1.99
48925458--48925518	18	3.4	18	81	2	70	13	16	27	42	1.85
48947639--48947688	23	2.2	22	96	3	91	44	18	0	38	1.50
48948724--48949160	32	13.7	32	79	2	394	41	14	10	32	1.81
48948724--48949162	64	6.9	64	89	1	614	41	14	10	33	1.81
48952116--48952140	3	8.3	3	100	0	50	68	0	0	32	0.90
48952251--48952308	19	2.8	20	78	17	66	37	0	5	56	1.21
48957291--48957339	24	2.0	24	84	7	64	48	14	4	32	1.62
48966565--48966648	43	2.0	43	85	0	114	28	15	23	32	1.95
48972745--48972807	29	2.1	31	85	11	87	50	4	7	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48974967--48975034	22	3.0	23	72	20	79	36	4	13	45	1.63
48977150--48977212	30	2.1	30	93	0	108	25	3	14	57	1.52
48977295--48977332	18	2.1	18	85	9	51	21	0	13	65	1.26
48980019--48980071	19	2.7	20	74	17	56	45	5	5	43	1.51
48980216--48980285	31	2.3	31	81	13	83	48	0	5	45	1.26
48980216--48980278	32	2.0	32	84	9	85	49	0	4	46	1.23
48985095--48985160	21	3.0	21	79	16	71	30	0	42	27	1.56
48985223--48985281	30	2.0	29	90	3	91	38	0	40	20	1.53
48990132--48990227	47	2.0	47	91	0	156	46	13	13	26	1.80
49012619--49012658	18	2.2	18	90	0	62	25	45	0	30	1.54
49013256--49013410	12	12.7	12	65	21	56	53	10	0	34	1.41
49013692--49013769	27	2.9	26	88	7	111	15	30	26	26	1.96
49013800--49013835	18	2.0	18	88	0	54	2	2	8	86	0.77
49013836--49013903	27	2.5	28	92	4	113	48	1	10	39	1.46
49014441--49014475	3	11.7	3	87	0	52	31	28	0	40	1.57
49017403--49017441	16	2.4	16	87	8	53	38	7	25	28	1.83
49021083--49021154	30	2.5	30	70	4	76	43	4	1	51	1.29
49022728--49022782	25	2.2	25	77	6	58	34	1	5	58	1.32
49026143--49026177	15	2.3	15	100	0	70	25	31	22	20	1.98
49033927--49033975	17	2.8	17	79	14	55	22	2	4	71	1.13
49036125--49036197	26	2.8	25	86	10	94	32	17	9	39	1.82
49044814--49044841	8	3.5	8	100	0	56	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49055336--49055494	37	4.3	37	82	0	147	35	19	20	25	1.96
49065595--49065652	27	2.1	27	84	6	73	48	5	20	25	1.70
49067260--49067326	35	1.9	34	82	8	82	67	4	23	4	1.28
49073856--49073898	18	2.3	19	88	4	61	69	0	2	27	1.00
49078181--49078206	12	2.2	12	100	0	52	61	0	15	23	1.33
49080508--49080607	42	2.4	42	89	0	146	38	11	27	24	1.88
49083258--49083284	3	9.0	3	100	0	54	66	0	0	33	0.92
49084037--49084063	8	3.4	8	100	0	54	88	0	0	11	0.50
49084769--49084923	83	1.9	83	85	5	215	20	25	23	30	1.98
49084849--49085213	69	5.3	69	82	4	378	20	23	24	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199