genome.fa.s20.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  72  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20296861--20296992	43	3.1	43	71	17	123	34	3	12	49	1.59
20296920--20296970	8	7.0	8	77	20	58	29	0	9	60	1.28
20296928--20296968	12	2.9	15	75	20	52	31	0	7	60	1.24
20298718--20298797	24	3.2	24	75	13	79	43	10	1	45	1.45
20299813--20299966	41	3.7	42	85	5	188	27	24	25	22	2.00
20300032--20300143	40	2.8	40	84	1	145	16	23	25	34	1.95
20300557--20300735	88	2.0	88	98	0	349	38	15	11	34	1.83
20307058--20307155	43	2.3	43	82	1	117	44	18	20	16	1.86
20314757--20314797	21	2.0	21	85	0	55	46	24	17	12	1.82
20314766--20314900	42	3.2	42	76	10	141	44	17	20	18	1.87
20314771--20314900	21	6.2	21	69	7	75	43	16	20	19	1.88
20314859--20314908	21	2.4	21	80	6	57	42	16	22	20	1.89
20318612--20318687	31	2.4	32	82	6	102	18	23	15	42	1.89
20318612--20318697	31	2.8	30	74	13	84	22	22	15	40	1.90
20320501--20320582	10	8.4	10	72	21	59	59	2	2	35	1.24
20320492--20320582	19	4.7	19	70	16	62	59	2	3	35	1.26
20321852--20321900	21	2.3	21	89	0	71	6	40	20	32	1.77
20321864--20321916	21	2.5	21	87	0	70	3	41	20	33	1.70
20322868--20323327	114	4.0	114	92	0	751	28	26	21	23	1.99
20323227--20323398	73	2.4	72	83	1	209	25	24	23	26	2.00
20325698--20325731	7	4.9	7	100	0	68	41	0	0	58	0.98
20340635--20340729	45	2.1	45	96	0	172	21	18	15	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20340644--20340739	45	2.1	45	90	0	147	22	19	14	42	1.88
20343923--20343961	14	2.7	14	84	4	51	12	0	7	79	0.93
20345363--20345391	6	4.8	6	100	0	58	51	48	0	0	1.00
20346456--20346643	45	4.2	44	74	19	167	31	27	17	24	1.97
20347526--20347584	28	2.0	31	83	9	79	50	5	0	44	1.24
20357105--20357243	40	3.5	39	79	10	147	38	20	20	21	1.94
20357275--20357383	41	2.7	40	82	1	137	25	21	24	28	1.99
20357788--20357831	14	3.1	14	83	3	52	29	2	31	36	1.70
20357967--20358025	7	8.4	7	84	0	73	11	0	52	35	1.38
20358140--20358172	14	2.4	14	94	0	57	15	0	51	33	1.43
20358734--20358938	113	1.8	113	90	0	329	43	13	10	32	1.78
20359466--20359491	11	2.4	11	100	0	52	0	7	7	84	0.77
20359735--20359778	23	2.0	22	91	8	72	13	0	0	86	0.57
20361146--20361181	18	2.0	18	88	0	54	16	22	11	50	1.77
20362192--20362296	43	2.5	42	78	6	113	27	17	28	26	1.97
20364334--20364393	3	20.0	3	100	0	120	33	33	0	33	1.58
20366069--20366112	23	1.9	23	90	0	70	38	20	18	22	1.93
20366946--20367080	30	4.5	30	80	0	135	41	17	5	34	1.74
20366975--20367080	5	21.2	5	79	0	95	38	18	6	35	1.77
20370442--20370480	16	2.4	16	87	8	53	25	10	5	58	1.51
20370548--20370596	23	2.1	23	85	7	64	18	6	10	65	1.43
20371500--20371703	106	1.9	106	97	0	390	29	19	19	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20377907--20377979	10	6.8	11	70	22	50	53	2	0	43	1.15
20378273--20378332	32	1.9	32	86	6	88	31	15	6	46	1.71
20386928--20387121	103	1.9	103	87	0	289	22	18	19	40	1.92
20387215--20387255	20	2.0	20	100	0	82	34	19	9	36	1.85
20404778--20404816	21	1.9	21	89	5	62	48	7	5	38	1.54
20406325--20406403	33	2.3	34	84	4	97	48	1	1	49	1.17
20410781--20410859	27	2.9	27	72	9	70	41	17	22	17	1.90
20412589--20412637	23	2.1	23	88	7	73	16	6	12	65	1.45
20413540--20413740	106	1.9	106	96	0	375	29	20	19	30	1.97
20425087--20425740	43	15.1	43	79	6	610	27	16	26	29	1.97
20425095--20425740	87	7.5	89	78	6	596	27	16	26	29	1.97
20425095--20425740	130	5.0	131	90	3	891	27	16	26	29	1.97
20425095--20425703	259	2.4	260	88	3	885	26	16	25	30	1.97
20427327--20427375	23	2.1	23	85	7	64	18	6	10	65	1.43
20428275--20428478	106	1.9	106	97	0	390	29	19	19	31	1.96
20449923--20450242	159	2.0	159	92	0	532	33	17	14	34	1.90
20450596--20450631	16	2.2	17	90	5	56	44	8	0	47	1.33
20450757--20450790	14	2.3	15	90	5	52	47	0	0	52	1.00
20452672--20452786	43	2.7	43	76	15	128	30	28	16	24	1.96
20465251--20465370	43	2.8	43	78	7	127	50	21	18	10	1.76
20465585--20465745	83	1.9	83	93	2	279	37	15	21	25	1.92
20469930--20469981	24	2.1	25	82	13	63	1	21	0	76	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20469940--20469981	19	2.2	19	83	8	50	0	23	0	76	0.79
20475845--20475893	6	7.8	6	79	6	53	46	16	18	18	1.84
20475873--20476028	45	3.3	45	82	10	195	42	19	17	20	1.90
20475865--20476028	51	3.3	51	82	10	214	41	19	18	20	1.91
20475963--20475989	6	4.5	6	100	0	54	48	14	18	18	1.82
20475973--20476055	39	2.2	39	86	6	116	38	21	20	19	1.93
20476428--20476477	25	2.0	25	84	11	66	38	20	0	42	1.52
20477251--20477291	13	3.2	13	86	6	57	0	29	0	70	0.87
20477489--20477561	5	13.8	5	78	16	76	60	1	0	38	1.06
20477490--20477561	8	9.0	8	74	17	69	61	1	0	37	1.05
20478535--20478572	18	2.1	18	95	0	67	34	5	13	47	1.65
20479433--20479471	20	2.0	20	85	14	55	2	25	5	66	1.25
20481893--20482218	165	2.0	160	84	6	415	38	13	13	34	1.84
20484185--20484211	2	13.5	2	100	0	54	0	0	48	51	1.00
20493300--20493324	4	6.2	4	100	0	50	24	0	0	76	0.80
20497607--20497679	11	6.7	10	80	13	74	21	30	0	47	1.51
20497607--20497679	22	3.3	21	88	9	110	21	30	0	47	1.51
20498818--20498842	7	3.6	7	100	0	50	28	0	12	60	1.32
20499340--20499396	30	1.9	30	85	0	78	33	38	12	15	1.85
20499489--20499531	18	2.4	18	88	0	59	18	27	9	44	1.80
20499951--20500023	34	2.1	34	97	0	137	39	4	5	50	1.44
20499967--20500035	34	2.2	32	82	12	81	46	4	8	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20499988--20500193	61	3.5	61	75	12	230	43	4	5	46	1.49
20502324--20502614	125	2.3	125	93	0	492	28	21	17	32	1.96
20502657--20502956	96	3.1	97	85	4	374	41	16	2	39	1.62
20507316--20507343	5	5.6	5	100	0	56	21	17	21	39	1.93
20508327--20508366	20	2.0	20	100	0	80	45	25	15	15	1.84
20508570--20508620	24	2.1	24	88	0	75	47	1	11	39	1.52
20531133--20531331	43	4.6	43	91	0	326	31	31	16	20	1.95
20531133--20531331	86	2.3	86	97	0	371	31	31	16	20	1.95
20532022--20532056	4	8.8	4	100	0	70	51	22	0	25	1.48
20535283--20535363	14	5.7	14	73	7	56	35	40	0	23	1.55
20535280--20535346	22	3.1	22	82	2	82	37	38	0	23	1.55
20535288--20535356	21	3.3	20	78	9	57	36	40	0	23	1.55
20535297--20535363	28	2.3	29	82	2	82	35	40	0	23	1.55
20535404--20535457	21	2.8	18	83	10	63	51	18	16	12	1.75
20535823--20535901	41	1.9	41	94	0	140	29	31	17	21	1.96
20535863--20536054	102	1.9	102	92	0	321	24	24	23	27	2.00
20535983--20536154	72	2.4	72	94	0	299	25	25	23	26	2.00
20536057--20536728	114	5.9	113	88	1	952	26	26	20	26	1.99
20536621--20536794	73	2.4	72	84	0	222	24	24	22	28	2.00
20538091--20538120	7	4.3	7	95	0	51	36	0	30	33	1.58
20538091--20538368	51	5.5	50	90	1	412	31	14	25	29	1.94
20542040--20542080	16	2.4	18	88	8	59	26	2	0	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20545017--20545079	9	6.8	9	75	13	56	68	0	4	26	1.10
20545016--20545068	19	2.8	20	82	8	74	73	0	1	24	0.93
20545320--20545407	44	2.0	44	93	0	149	36	9	7	46	1.65
20545728--20545808	31	2.6	31	82	0	99	27	18	14	39	1.90
20547869--20547897	15	1.9	15	100	0	58	44	0	34	20	1.52
20551033--20551063	6	5.2	6	100	0	62	0	0	51	48	1.00
20558348--20558390	21	2.0	21	86	0	59	41	6	0	51	1.29
20558907--20558947	18	2.4	17	88	8	57	36	2	0	60	1.10
20558907--20558948	9	5.0	8	81	18	50	35	2	0	61	1.09
20558907--20558948	16	2.5	17	88	7	59	35	2	0	61	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199