genome.fa.s20.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  181  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52585266--52585326	21	2.9	22	73	7	56	50	3	3	42	1.34
52596014--52596099	43	2.0	43	100	0	172	37	13	9	39	1.78
52597228--52597291	30	2.2	28	84	13	85	25	6	0	68	1.12
52611028--52611150	50	2.5	50	85	2	131	30	18	21	29	1.97
52614496--52614545	25	1.9	27	84	8	68	38	2	8	52	1.43
52615467--52615504	19	2.0	19	89	0	58	57	5	7	28	1.49
52632088--52632137	22	2.4	22	76	6	59	54	6	2	38	1.37
52632565--52632611	11	4.6	10	80	12	51	29	4	4	61	1.34
52633021--52633089	25	2.6	27	82	13	81	40	10	0	49	1.37
52633023--52633107	28	3.1	28	76	18	83	38	9	0	51	1.34
52634333--52634372	21	1.9	21	84	0	53	62	2	0	35	1.09
52635880--52635936	21	2.7	21	68	10	53	54	8	1	35	1.42
52640619--52640655	15	2.5	15	100	0	74	32	0	24	43	1.55
52641343--52641399	28	2.0	28	96	0	105	26	8	31	33	1.87
52646086--52646129	21	2.0	22	83	12	56	38	0	2	59	1.10
52655981--52656019	15	2.6	14	84	11	51	38	0	15	46	1.46
52656996--52657156	70	2.3	70	93	0	277	29	14	18	37	1.90
52662191--52662395	93	2.2	94	80	6	211	24	13	11	50	1.75
52662555--52662670	60	1.9	60	91	0	187	34	14	10	40	1.80
52668248--52668296	24	2.0	24	100	0	98	28	26	12	32	1.92
52682438--52682481	19	2.2	21	84	11	58	56	4	0	38	1.20
52689325--52689374	22	2.3	22	82	6	57	50	4	12	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52706844--52706871	14	2.0	14	100	0	56	50	7	0	42	1.30
52707354--52707476	27	4.5	27	85	1	156	26	16	28	28	1.97
52708852--52708932	32	2.5	32	85	0	108	27	2	18	51	1.58
52712478--52712508	16	1.9	16	93	0	53	48	9	6	35	1.62
52712678--52712739	18	3.4	18	78	10	65	35	0	9	54	1.33
52713670--52713696	6	4.5	6	100	0	54	0	62	0	37	0.95
52713738--52713766	4	7.2	4	100	0	58	24	0	24	51	1.48
52720147--52720242	11	9.3	11	69	24	59	32	30	1	36	1.65
52720133--52720202	22	3.2	21	88	8	97	32	27	1	38	1.66
52720173--52720231	30	2.0	30	93	0	100	32	33	0	33	1.58
52720152--52720252	52	2.0	49	84	9	132	32	31	0	34	1.65
52720203--52720253	22	2.4	22	83	6	70	33	33	0	33	1.58
52720287--52720350	29	2.2	29	80	5	76	39	0	1	59	1.07
52723211--52723359	45	3.2	45	89	6	208	46	22	0	30	1.56
52722620--52723377	23	29.4	27	83	11	721	46	20	0	32	1.56
52727798--52727883	19	4.4	19	79	13	79	23	9	1	66	1.28
52731743--52731803	26	2.3	26	97	0	113	42	6	0	50	1.28
52731938--52732008	37	1.9	37	100	0	142	33	7	15	43	1.74
52732479--52732574	19	5.2	19	78	5	115	38	11	0	50	1.39
52732487--52732574	18	4.8	18	79	6	97	37	11	0	51	1.38
52732479--52732574	37	2.6	37	98	0	183	38	11	0	50	1.39
52732600--52732703	36	2.9	36	92	4	165	47	0	9	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52732611--52732703	19	5.1	19	69	12	86	49	0	10	39	1.38
52733245--52733296	27	1.9	27	96	0	95	13	32	23	30	1.93
52733247--52733305	27	2.2	27	87	0	82	13	28	27	30	1.94
52733357--52733421	27	2.4	27	92	2	103	43	0	10	46	1.38
52733357--52733421	28	2.4	28	92	2	105	43	0	10	46	1.38
52733662--52733712	20	2.6	20	70	14	52	49	0	0	50	1.00
52747970--52748232	40	6.6	40	86	3	307	26	27	20	25	1.99
52755285--52755587	40	7.6	40	89	2	396	27	27	20	25	1.99
52760401--52760425	3	8.3	3	100	0	50	32	0	0	68	0.90
52760743--52760782	20	2.1	18	86	13	53	25	15	2	57	1.50
52760830--52761110	110	2.6	109	89	2	411	30	14	20	34	1.93
52762731--52762865	51	2.7	51	92	1	227	28	24	14	32	1.94
52762837--52762893	28	2.0	28	100	0	114	24	17	21	36	1.94
52762790--52762944	79	2.0	79	97	0	292	28	21	16	33	1.95
52762739--52762995	130	2.0	129	92	0	433	28	22	15	33	1.95
52762865--52763025	51	3.2	51	90	0	268	27	22	16	34	1.95
52773392--52773529	73	1.9	71	91	2	222	47	13	8	30	1.72
52774635--52774696	18	3.6	17	71	16	56	29	6	1	62	1.29
52787321--52787442	22	5.3	22	62	21	61	25	29	11	33	1.91
52787293--52787889	47	12.6	47	91	4	873	27	29	9	33	1.88
52787293--52787889	96	6.3	95	91	3	879	27	29	9	33	1.88
52789338--52789457	56	2.1	56	96	0	222	22	22	9	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52790724--52790998	40	6.9	40	90	0	406	25	28	22	24	1.99
52790724--52791040	80	4.0	80	87	0	420	26	28	21	24	1.99
52790724--52791078	120	3.0	119	84	3	439	25	28	21	24	1.99
52790737--52791164	40	10.7	40	82	7	373	25	28	21	24	1.99
52793468--52793589	22	5.3	22	62	21	61	25	29	11	33	1.91
52793440--52793989	47	11.6	47	93	2	802	28	29	9	33	1.88
52795437--52795556	56	2.1	56	93	0	204	21	23	10	45	1.82
52805540--52805602	23	2.6	25	73	14	60	11	6	17	65	1.45
52806651--52806681	16	1.9	16	100	0	62	25	12	0	61	1.32
52806652--52806686	16	2.2	16	90	5	54	28	17	0	54	1.43
52808277--52808366	19	4.6	19	75	6	65	67	2	2	27	1.14
52808293--52808341	18	2.8	18	78	3	55	67	4	2	26	1.19
52808314--52808365	24	2.1	24	82	10	61	67	3	1	26	1.18
52809071--52809099	11	2.6	11	100	0	58	34	17	0	48	1.47
52809095--52809184	36	2.5	37	78	7	96	33	4	3	58	1.34
52809169--52809211	23	1.9	23	85	4	61	25	4	2	67	1.22
52809231--52809344	19	5.8	19	68	13	63	28	4	3	64	1.29
52809317--52809342	11	2.4	11	100	0	52	26	0	0	73	0.84
52827782--52827913	50	2.6	52	78	8	146	37	12	15	34	1.85
52827952--52827993	20	2.2	19	83	12	50	59	4	2	33	1.31
52827952--52827994	21	2.2	19	83	8	50	60	4	2	32	1.30
52833450--52833505	26	2.2	26	86	0	76	46	1	0	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52833458--52833506	14	3.6	14	79	20	68	44	0	0	55	0.99
52834299--52834341	22	2.0	22	85	0	59	25	16	4	53	1.62
52837820--52837844	12	2.1	12	100	0	50	52	16	16	16	1.76
52842990--52843025	18	2.1	17	89	5	54	22	2	0	75	0.94
52848868--52848990	45	2.7	45	85	0	147	43	18	17	20	1.89
52848954--52849066	45	2.5	45	91	0	181	36	17	22	23	1.95
52848911--52849121	45	4.7	45	78	3	131	38	18	20	22	1.93
52849090--52849212	45	2.7	45	81	3	131	46	14	21	17	1.84
52853641--52853677	19	1.9	19	88	0	56	24	8	35	32	1.85
52863222--52863344	60	2.0	60	81	3	140	43	3	5	47	1.43
52865076--52865143	29	2.3	29	90	5	111	52	1	13	32	1.49
52865692--52865731	14	2.9	14	84	0	53	32	7	17	42	1.77
52865715--52865754	20	2.0	20	90	0	62	27	10	12	50	1.72
52865700--52865766	34	1.9	35	90	3	109	31	8	13	46	1.74
52865694--52865770	14	5.0	15	71	20	52	32	9	15	42	1.78
52865853--52865880	14	2.0	14	100	0	56	42	0	0	57	0.99
52866064--52866206	71	2.2	63	75	22	166	42	17	9	30	1.80
52867156--52867224	35	1.9	36	94	2	122	52	17	2	27	1.59
52868754--52868786	15	2.1	16	94	5	59	60	6	18	15	1.54
52871187--52871238	25	2.1	25	85	7	70	40	11	25	23	1.88
52880416--52880523	44	2.4	44	87	3	144	29	23	13	33	1.93
52880931--52880964	9	3.9	9	84	7	52	2	17	0	79	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52880931--52880964	17	2.0	17	94	0	59	2	17	0	79	0.86
52880973--52881044	5	14.4	5	75	20	62	55	4	1	38	1.28
52880974--52881016	19	2.3	19	92	8	70	55	0	2	41	1.12
52880980--52881045	24	2.7	24	81	9	71	57	4	1	36	1.28
52883923--52883966	23	1.9	22	82	17	54	38	22	0	38	1.55
52884011--52884104	45	2.1	45	87	0	134	31	21	19	27	1.97
52884101--52884296	51	3.9	50	74	6	189	30	26	17	25	1.97
52887935--52887972	18	2.1	19	95	5	69	10	7	10	71	1.32
52888276--52888332	27	2.1	27	90	3	89	73	7	3	15	1.18
52891414--52891506	48	1.9	48	91	0	150	33	6	10	49	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199