genome.fa.s20.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  199  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57895787--57895832	21	2.2	21	84	7	58	50	19	4	26	1.66
57900681--57900752	32	2.2	32	83	9	85	38	8	12	40	1.73
57901776--57901879	52	2.0	52	92	3	174	25	27	25	21	1.99
57911641--57911680	6	6.7	6	82	0	53	2	32	17	47	1.61
57912402--57912435	13	2.7	13	95	4	61	41	44	0	14	1.45
57912417--57912532	38	3.0	38	88	2	169	50	25	3	21	1.64
57912665--57912725	17	3.4	17	68	12	50	32	3	13	50	1.57
57912660--57912730	37	1.9	37	97	0	133	33	4	15	46	1.65
57917398--57917442	22	2.1	22	84	12	58	57	4	0	37	1.19
57921800--57921938	40	3.5	40	78	6	140	30	24	17	28	1.97
57922071--57922120	15	3.2	15	76	20	57	50	14	0	36	1.43
57922098--57922144	24	2.0	24	84	16	62	51	17	0	31	1.46
57929698--57929740	2	21.5	2	90	0	68	51	44	0	4	1.22
57931985--57932090	41	2.6	41	92	0	167	21	19	24	33	1.97
57938603--57938654	25	2.1	24	82	3	59	38	1	0	59	1.08
57941619--57941693	36	2.1	36	94	0	132	34	10	17	37	1.84
57946197--57946232	5	7.2	5	100	0	72	19	0	0	80	0.71
57946438--57946504	26	2.6	26	72	13	66	47	1	0	50	1.10
57946437--57946547	34	3.1	36	75	20	101	47	2	0	49	1.15
57947938--57948160	114	1.9	115	90	2	360	32	14	20	32	1.93
57948688--57948864	53	3.3	53	91	3	268	51	1	22	24	1.57
57950982--57951006	13	1.9	13	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57951863--57951888	6	4.3	6	100	0	52	80	0	0	19	0.71
57951903--57951934	12	2.6	13	90	9	50	81	3	0	15	0.82
57956856--57956900	22	2.0	23	83	12	58	44	2	2	51	1.26
57962479--57962562	41	2.0	41	97	0	159	26	9	8	55	1.60
57979943--57979985	23	1.9	23	90	4	70	39	4	13	41	1.66
57984500--57984541	21	2.0	21	100	0	84	38	28	9	23	1.86
57985284--57985334	16	2.8	19	67	27	56	50	11	0	37	1.39
57985252--57985438	96	2.0	95	88	5	281	45	8	5	40	1.57
57987832--57987901	2	35.0	2	100	0	140	50	0	50	0	1.00
57991265--57991304	14	2.6	16	88	7	57	55	0	0	45	0.99
57998342--57998373	3	10.7	3	93	0	55	3	34	0	62	1.11
58002056--58002088	16	2.1	16	100	0	66	48	12	27	12	1.76
58005612--58005672	25	2.4	25	86	0	86	27	18	39	14	1.90
58005813--58005953	40	3.5	40	86	1	192	15	21	19	43	1.88
58008727--58008776	12	4.2	12	73	21	52	38	0	0	62	0.96
58008725--58008782	23	2.6	24	75	22	63	39	0	0	60	0.97
58008727--58008780	16	3.1	17	79	15	58	37	0	0	62	0.95
58016687--58016711	7	3.6	7	100	0	50	88	0	0	12	0.53
58023433--58023551	59	2.0	59	98	0	229	33	12	15	38	1.85
58030466--58030492	12	2.2	12	100	0	54	7	25	37	29	1.83
58031127--58031210	43	2.0	43	88	4	125	29	17	22	29	1.97
58034663--58034708	10	4.5	10	83	2	56	26	2	23	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58035450--58035507	20	2.8	21	78	5	64	37	15	20	25	1.92
58037158--58037188	16	1.9	16	93	0	53	77	6	6	9	1.12
58041284--58041387	43	2.4	44	82	6	122	25	32	19	23	1.97
58046890--58046953	33	1.9	33	96	0	119	37	15	17	29	1.91
58047094--58047125	2	16.0	2	93	0	55	46	0	0	53	1.00
58047094--58047133	10	4.0	10	93	0	53	42	0	2	55	1.13
58052908--58052987	42	1.9	42	84	0	106	21	32	25	21	1.98
58057830--58057870	17	2.4	17	91	0	64	26	31	12	29	1.92
58061487--58061575	20	4.3	20	72	16	67	30	1	32	35	1.65
58061520--58061575	27	2.1	27	90	6	87	28	0	32	39	1.57
58061612--58061668	27	2.1	27	80	6	62	35	7	29	28	1.83
58061627--58061668	13	3.0	14	83	16	52	38	7	26	28	1.82
58061788--58061841	14	3.8	14	76	11	56	16	0	24	59	1.37
58061795--58061840	21	2.2	21	84	7	58	17	0	26	56	1.41
58065449--58065497	1	49.0	1	79	0	53	0	2	8	89	0.55
58065467--58065505	20	2.0	20	84	0	51	0	5	12	82	0.83
58067825--58067854	12	2.6	11	90	10	51	80	0	3	16	0.85
58068049--58068091	13	3.1	14	84	15	54	60	2	6	30	1.35
58069467--58069577	44	2.5	43	83	2	132	29	19	21	28	1.98
58069655--58069774	44	2.7	44	89	0	177	29	23	13	34	1.93
58069625--58070650	133	7.8	129	80	7	802	29	24	15	31	1.95
58069796--58069833	14	2.7	14	87	0	58	13	28	13	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58069866--58070650	44	17.7	44	80	5	839	30	23	15	31	1.95
58069866--58070650	89	8.9	89	82	4	750	30	23	15	31	1.95
58069840--58070675	133	6.3	132	85	6	919	30	23	15	30	1.95
58072772--58072798	4	6.8	4	100	0	54	48	0	25	25	1.52
58072807--58072849	18	2.4	18	92	0	68	60	6	18	13	1.55
58079969--58080005	17	2.2	17	95	0	65	78	2	18	0	0.87
58079972--58080021	22	2.2	23	85	3	66	74	4	20	2	1.08
58081305--58081848	50	10.9	49	67	12	216	30	21	21	25	1.98
58081262--58082271	199	5.1	198	88	4	1451	30	21	22	25	1.99
58081832--58081904	37	2.0	37	83	0	92	27	28	21	21	1.99
58081782--58081955	87	2.0	86	85	1	231	30	24	20	24	1.98
58081883--58082247	50	7.3	50	69	2	223	29	22	21	26	1.99
58081266--58082247	385	2.5	390	89	3	1458	30	21	22	25	1.99
58081867--58082247	99	3.8	99	82	3	453	29	22	22	25	1.99
58082300--58082438	44	3.2	44	72	10	158	31	23	25	19	1.98
58082281--58082465	87	2.1	87	95	1	336	31	25	21	22	1.98
58082246--58082422	43	4.2	42	72	10	146	31	25	20	22	1.98
58100195--58100228	15	2.3	15	100	0	68	44	17	14	23	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199

The End!