genome.fa.s20.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  162  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47497949--47498327	189	2.0	189	96	0	704	35	11	19	32	1.89
47500679--47500864	40	4.7	40	86	5	225	25	22	26	26	2.00
47500732--47500897	80	2.1	79	85	5	219	26	20	26	26	1.99
47506166--47506351	40	4.7	40	86	5	225	25	22	26	26	2.00
47506219--47506384	80	2.1	79	85	5	219	26	20	26	26	1.99
47508514--47508598	40	2.1	40	91	0	134	47	29	14	9	1.75
47521959--47521990	9	3.7	9	95	4	57	34	9	0	56	1.32
47524589--47524664	26	2.9	26	86	0	89	38	26	22	13	1.91
47524840--47525168	27	12.2	26	84	7	385	17	19	18	44	1.88
47524838--47525168	81	4.1	81	86	6	440	18	19	19	43	1.88
47528208--47528423	79	2.7	80	82	7	260	25	23	27	23	2.00
47528208--47528423	39	5.4	40	85	5	253	25	23	27	23	2.00
47528261--47528464	79	2.6	79	83	5	209	25	21	27	25	1.99
47536202--47536424	78	2.8	79	82	10	242	25	22	27	24	2.00
47536202--47536424	40	5.7	39	84	8	258	25	22	27	24	2.00
47542916--47543009	47	2.0	47	97	0	179	36	26	4	32	1.76
47551316--47551355	20	2.0	20	85	9	55	42	20	27	10	1.83
47556310--47556354	19	2.3	19	88	3	63	75	2	17	4	1.07
47597700--47597923	40	5.7	40	84	7	246	25	22	27	24	2.00
47597700--47597923	79	2.8	80	82	9	235	25	22	27	24	2.00
47597753--47597930	39	4.5	38	87	3	194	25	21	28	24	1.99
47597753--47597956	79	2.6	79	83	5	209	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47603844--47603886	23	1.9	22	85	4	59	20	6	6	65	1.41
47603841--47603893	22	2.4	22	81	12	63	22	5	5	66	1.35
47606854--47606919	29	2.3	29	83	0	78	34	22	21	21	1.96
47616138--47616197	29	2.1	29	96	0	111	40	8	5	46	1.56
47618988--47619047	29	2.0	30	93	6	104	45	13	3	38	1.60
47620830--47621142	160	2.0	160	93	0	536	14	23	15	47	1.81
47627036--47627103	33	2.1	33	100	0	136	44	5	2	47	1.42
47627299--47627339	21	1.9	22	85	5	57	36	0	2	60	1.10
47627089--47627548	120	3.9	120	92	2	768	43	1	4	51	1.30
47627085--47627548	239	2.0	235	93	2	804	43	1	4	51	1.30
47627494--47627528	18	2.0	17	88	5	52	42	0	2	54	1.15
47627685--47627867	44	4.2	46	81	14	235	36	29	4	29	1.77
47627683--47627865	85	2.2	85	97	0	348	36	30	4	29	1.77
47627841--47627879	16	2.4	16	91	4	60	20	33	5	41	1.74
47628638--47628662	3	8.3	3	100	0	50	36	0	0	64	0.94
47633705--47633799	48	2.0	48	89	0	145	42	22	16	18	1.89
47634021--47634074	17	2.9	19	71	20	60	46	18	12	22	1.83
47634004--47634074	36	2.0	36	91	0	115	46	15	12	25	1.81
47636851--47637020	76	2.2	80	78	12	183	39	4	12	43	1.63
47637268--47637368	41	2.5	41	90	1	159	25	16	20	36	1.94
47645236--47645381	41	3.6	41	83	3	188	26	19	20	34	1.96
47647656--47647709	19	2.7	20	86	13	67	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47653217--47653296	28	2.9	28	76	10	83	33	15	26	25	1.95
47653295--47653338	23	1.9	23	95	0	79	56	4	25	13	1.56
47655110--47655139	14	2.1	14	100	0	60	40	20	6	33	1.78
47656782--47656835	23	2.3	23	81	6	65	46	3	1	48	1.30
47665423--47665603	86	2.1	86	98	1	355	40	4	7	47	1.52
47665670--47665886	51	4.0	51	85	15	303	46	18	7	28	1.76
47665760--47665787	12	2.3	12	100	0	56	57	21	0	21	1.41
47665709--47665838	63	2.1	63	100	0	260	47	18	6	27	1.72
47665670--47665886	114	1.9	113	97	2	409	46	18	7	28	1.76
47665832--47665942	33	3.4	34	82	10	115	43	17	8	31	1.78
47668965--47669827	120	7.2	120	97	1	1595	43	2	6	47	1.40
47668965--47669827	239	3.6	240	97	0	1604	43	2	6	47	1.40
47669535--47669569	18	2.0	17	88	5	52	45	0	0	54	0.99
47668965--47669827	359	2.4	360	97	0	1604	43	2	6	47	1.40
47669975--47670065	45	2.0	45	85	2	121	37	28	6	27	1.82
47670046--47670114	16	4.2	16	92	3	120	36	37	1	24	1.65
47670046--47670114	33	2.1	32	94	2	120	36	37	1	24	1.65
47671824--47671857	15	2.3	15	100	0	68	29	14	23	32	1.94
47678148--47678209	32	1.9	32	100	0	124	27	9	33	29	1.88
47688175--47688207	14	2.3	15	89	5	50	72	3	0	24	0.98
47688206--47688307	30	3.4	31	83	5	122	29	22	3	44	1.71
47688826--47688887	14	4.9	13	75	15	51	74	9	16	0	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47688831--47688885	12	4.7	11	79	16	58	72	9	18	0	1.10
47688847--47688902	24	2.3	25	90	6	96	66	8	23	1	1.30
47689488--47689535	17	2.8	17	76	23	55	31	16	10	41	1.82
47689590--47689638	16	3.0	16	80	16	64	32	14	12	40	1.83
47689668--47689703	9	4.0	9	100	0	72	88	0	0	11	0.50
47689766--47690191	17	25.0	17	72	13	209	30	13	11	44	1.79
47689766--47689884	18	6.6	18	80	7	71	28	11	12	47	1.77
47690005--47690175	89	1.9	88	87	5	247	30	12	11	44	1.79
47690155--47690193	18	2.2	18	85	0	51	41	12	7	38	1.72
47690014--47690205	89	2.2	86	81	8	217	32	12	10	44	1.76
47707760--47708949	72	16.6	72	95	1	2095	31	16	18	33	1.93
47707760--47709217	289	5.1	288	93	3	2434	30	16	18	34	1.93
47708953--47709217	72	3.7	72	91	4	421	30	16	18	34	1.94
47709174--47709328	55	2.8	54	89	5	240	29	16	19	35	1.93
47709600--47709701	30	3.4	31	83	5	122	29	22	3	44	1.71
47710614--47710661	17	2.8	17	76	23	55	31	16	10	41	1.82
47710716--47710764	16	3.0	16	80	16	64	32	12	12	42	1.79
47710722--47710764	17	2.6	18	85	14	65	23	13	13	48	1.79
47710794--47710838	19	2.4	18	88	3	72	86	0	0	13	0.57
47710795--47710839	9	5.0	9	84	10	65	84	0	0	15	0.62
47710902--47711332	18	25.0	18	70	15	216	30	13	11	45	1.79
47710911--47711321	17	23.9	17	71	13	209	29	14	11	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47713594--47713639	24	1.9	24	86	0	65	52	2	0	45	1.13
47713858--47713891	13	2.6	13	85	0	50	41	14	17	26	1.88
47724999--47725044	23	2.0	23	83	8	58	56	2	2	39	1.24
47726551--47726577	7	3.9	7	100	0	54	25	14	14	44	1.84
47735542--47735574	16	2.1	16	88	11	50	48	0	3	48	1.17
47736244--47736272	14	2.0	15	93	6	51	68	0	0	31	0.89
47739072--47739117	24	1.9	24	95	0	83	34	6	26	32	1.82
47747314--47747348	18	1.9	18	88	0	52	40	0	5	54	1.24
47749260--47749295	18	2.0	18	94	0	63	66	13	5	13	1.41
47749633--47749687	20	2.8	20	88	0	83	25	29	16	29	1.97
47753716--47753787	26	2.7	27	89	8	112	43	9	0	47	1.36
47753716--47753786	28	2.6	27	93	4	117	42	9	0	47	1.36
47753843--47753918	27	2.8	27	93	0	125	30	30	25	14	1.95
47753962--47754085	4	31.0	4	78	13	98	70	0	29	0	0.87
47753965--47754092	43	2.8	48	78	16	144	70	0	29	0	0.88
47760463--47760493	12	2.6	12	94	0	53	61	19	0	19	1.35
47760475--47760585	26	3.4	36	70	25	111	53	11	0	35	1.38
47760738--47760778	3	13.7	3	94	0	73	65	34	0	0	0.93
47760835--47760873	20	2.0	21	85	10	55	66	10	0	23	1.22
47760897--47760925	10	2.7	11	89	10	51	0	27	0	72	0.85
47761008--47761070	27	2.3	27	91	0	99	19	30	26	23	1.98
47763553--47763623	32	2.3	31	84	13	94	43	0	1	54	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47765800--47765848	19	2.5	20	81	18	68	59	0	0	40	0.98
47765789--47765850	17	3.4	19	80	14	69	53	0	0	46	1.00
47766627--47766685	28	2.1	28	87	9	86	33	1	0	64	1.04
47770276--47770462	27	7.7	25	65	22	87	41	18	8	31	1.80
47770275--47770461	47	3.9	48	89	4	281	41	18	8	31	1.80
47770275--47770461	95	2.0	95	88	4	279	41	18	8	31	1.80
47773798--47773870	21	3.5	21	74	7	76	17	17	19	45	1.86
47773798--47773890	42	2.2	42	86	3	134	19	19	17	44	1.87
47773818--47773911	21	4.5	20	72	6	62	17	20	18	44	1.87
47778735--47778764	14	2.1	14	100	0	60	43	23	0	33	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199