genome.fa.s20.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  43  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12883461--12883501	21	2.0	21	90	0	64	19	29	21	29	1.98
12900500--12900557	22	2.9	19	80	14	80	44	18	8	27	1.79
12901528--12901571	15	2.9	15	86	3	61	61	0	0	38	0.96
12902980--12903008	12	2.3	13	94	5	51	68	6	13	10	1.37
12903669--12903777	3	36.7	3	73	5	60	32	9	0	57	1.36
12910214--12911046	44	18.8	43	77	6	555	30	19	22	27	1.98
12910204--12911040	178	4.7	178	82	6	894	30	19	23	26	1.98
12910216--12911040	133	6.2	132	77	7	679	30	19	23	26	1.98
12910216--12911040	89	9.3	89	75	7	595	30	19	23	26	1.98
12910214--12911046	399	2.1	398	84	3	1095	30	19	22	27	1.98
12911690--12911727	20	2.0	20	89	5	60	71	10	7	10	1.32
12912582--12912675	6	15.8	6	73	5	57	26	8	1	63	1.29
12912581--12912670	12	7.5	12	70	8	67	26	8	1	63	1.31
12912583--12912670	24	3.7	24	82	0	104	27	9	1	62	1.32
12912791--12912834	12	3.5	12	78	9	52	18	4	2	75	1.09
12913502--12913729	88	2.6	88	92	1	377	28	24	23	23	1.99
12913845--12914041	44	4.2	44	70	17	148	34	18	20	26	1.96
12913848--12914037	98	1.9	97	82	6	231	33	18	21	26	1.97
12913959--12914116	44	3.7	44	74	9	128	31	18	20	29	1.97
12914155--12914541	50	7.7	50	71	3	267	34	23	19	22	1.97
12914155--12914525	100	3.7	100	82	0	454	34	23	19	22	1.97
12914136--12914593	100	4.6	100	79	5	435	33	24	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12917928--12917964	9	4.1	9	92	0	65	29	10	13	45	1.77
12922714--12922764	17	3.0	16	74	20	50	64	0	5	29	1.17
12924761--12924889	63	2.0	63	95	2	233	35	13	13	37	1.84
12925699--12925819	61	2.0	61	83	6	154	39	4	4	52	1.40
12926005--12926076	16	4.5	16	83	0	90	27	25	6	40	1.81
12927818--12927855	19	2.0	19	100	0	76	52	5	21	21	1.66
12927944--12927999	21	2.7	21	76	13	62	51	1	3	42	1.29
12931816--12931849	11	3.1	11	91	0	50	8	11	2	76	1.12
12937116--12938327	254	4.8	253	93	2	1977	37	10	15	35	1.83
12937116--12938316	511	2.4	509	93	2	1995	37	10	15	35	1.82
12938418--12938478	31	2.0	31	84	12	81	63	3	1	31	1.20
12947285--12947517	113	2.1	113	99	0	457	15	30	19	34	1.93
12949006--12949050	23	2.0	23	90	0	72	42	20	4	33	1.72
12953293--12953337	19	2.4	19	88	0	63	11	13	0	75	1.05
12953737--12953808	27	2.7	27	75	0	72	27	31	30	9	1.89
12953988--12954030	22	1.9	22	86	13	61	16	0	9	74	1.06
12954175--12954321	76	1.9	77	83	4	190	30	3	13	52	1.57
12954131--12954350	76	2.8	77	74	9	187	35	3	10	50	1.53
12956479--12956510	13	2.5	13	94	0	55	31	0	12	56	1.37
12956605--12956844	50	4.7	50	85	3	282	27	24	29	19	1.98
12956605--12956854	100	2.4	103	86	5	344	26	24	28	20	1.99
12969458--12969697	50	4.7	50	85	3	282	27	23	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12969458--12969707	100	2.4	103	88	4	353	26	23	28	21	1.99
12973515--12973546	12	2.7	12	95	0	55	9	34	37	18	1.83
12977758--12977933	37	4.8	37	95	0	289	39	13	21	25	1.90
12977896--12978019	46	2.8	46	91	3	200	33	16	22	27	1.96
12978755--12979644	158	5.6	159	90	2	1339	27	10	8	53	1.64
12979603--12979707	49	2.1	51	81	10	119	22	8	4	63	1.41
12979730--12979869	70	2.0	70	85	6	189	48	11	6	33	1.65
12979734--12979876	67	2.1	66	82	10	166	49	11	6	32	1.63
12979949--12980009	21	3.0	21	81	13	83	0	36	0	63	0.94
12980041--12980111	26	2.7	27	80	4	81	9	35	30	23	1.88
12986517--12986660	72	2.0	72	100	0	288	37	22	11	29	1.88
12987047--12987240	37	5.0	37	86	11	264	25	21	15	37	1.93
12987157--12987425	46	5.6	46	90	6	358	27	22	14	34	1.94
12987200--12987416	52	4.2	52	87	8	320	27	23	14	35	1.93
12987157--12987425	98	2.8	94	83	12	348	27	22	14	34	1.94
12991515--12991569	26	2.2	26	83	3	67	58	0	1	40	1.09
12992884--12992961	39	2.0	39	100	0	156	17	5	28	48	1.68
12999958--12999986	11	2.7	11	94	5	51	68	0	0	31	0.89
12999900--13000032	47	2.7	50	80	12	145	60	1	2	35	1.18
13000700--13000726	6	4.5	6	100	0	54	51	0	0	48	1.00
13000689--13000823	72	1.9	71	80	7	157	41	0	1	56	1.14
13000788--13000857	24	3.0	23	80	15	81	35	1	1	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13003315--13003347	16	1.9	18	88	11	52	63	12	0	24	1.28
13006485--13006545	31	2.0	30	87	3	86	42	6	13	37	1.70
13008955--13009016	22	2.7	22	90	5	88	46	1	3	48	1.28
13008990--13009031	16	2.6	16	96	0	75	47	2	4	45	1.36
13009026--13009228	111	1.8	110	90	2	327	39	7	6	45	1.59
13009253--13009312	29	2.1	28	84	6	77	23	11	16	48	1.79
13010320--13010361	9	5.1	9	88	11	56	30	0	11	57	1.35
13010984--13011036	9	6.0	9	80	4	54	15	35	13	35	1.86
13015779--13015813	17	2.1	17	94	5	63	71	11	0	17	1.14
13015743--13015803	22	2.8	22	70	9	61	65	9	0	24	1.23
13015777--13015819	16	2.8	16	86	13	63	67	11	0	20	1.22
13022257--13022313	26	2.2	26	87	0	78	40	1	0	57	1.09
13024819--13024883	2	32.5	2	100	0	130	0	49	0	50	1.00
13025015--13025053	18	2.2	18	90	0	60	23	17	25	33	1.96
13027105--13027162	27	2.1	27	93	0	98	32	12	12	43	1.79
13028356--13028381	3	8.7	3	100	0	52	65	0	34	0	0.93
13037291--13037324	14	2.4	15	90	9	54	70	2	0	26	1.01
13037320--13037421	30	3.4	30	86	2	143	29	21	3	45	1.70
13037788--13037822	3	11.3	3	87	6	52	71	0	28	0	0.86
13037793--13037839	10	4.8	10	92	2	60	78	0	21	0	0.75
13037953--13038043	15	6.6	14	69	21	52	68	20	9	1	1.25
13037984--13038024	15	2.7	15	82	17	57	68	17	14	0	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13038136--13038219	15	5.5	15	83	8	98	78	0	21	0	0.75
13038137--13038220	26	3.2	25	83	12	91	79	0	20	0	0.73
13038136--13038218	33	2.4	31	83	16	94	78	0	21	0	0.75
13038136--13038219	7	12.0	7	77	7	82	78	0	21	0	0.75
13038148--13038223	18	4.3	17	75	18	75	80	0	19	0	0.72
13038149--13038224	37	2.0	41	82	10	90	78	0	21	0	0.74
13038764--13038806	22	2.0	22	86	8	63	53	16	4	25	1.62
13038798--13038964	17	9.5	17	75	10	140	29	11	10	48	1.73
13038803--13038911	18	6.2	18	78	14	84	32	9	9	49	1.66
13038802--13038964	35	4.7	35	80	3	177	30	11	10	47	1.73
13052080--13052120	15	2.7	15	82	17	57	68	17	14	0	1.22
13052232--13052325	15	6.0	15	83	9	116	79	0	20	0	0.73
13052233--13052325	8	11.8	8	77	11	93	80	0	19	0	0.71
13052871--13052912	21	2.1	21	86	8	61	52	16	4	26	1.63
13052908--13053070	17	9.4	17	78	9	159	30	12	10	47	1.74
13052908--13053070	35	4.7	34	79	8	168	30	12	10	47	1.74
13056960--13056997	15	2.5	15	91	0	58	23	0	7	68	1.16
13060433--13060535	38	2.7	38	93	1	172	31	21	19	28	1.97
13060428--13060562	38	3.5	38	83	4	119	31	22	17	27	1.97
13060718--13060764	24	2.0	24	84	16	62	51	17	0	31	1.46
13061431--13061497	4	17.0	4	75	14	52	2	23	1	71	1.08
13061431--13061499	18	3.8	17	74	12	66	2	23	1	72	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13062983--13063014	16	2.1	16	94	5	57	50	0	0	50	1.00
13063138--13063197	31	1.9	32	86	3	86	68	6	11	13	1.39
13063426--13063476	25	2.1	25	96	3	95	58	11	7	21	1.58
13067685--13067747	30	2.1	30	93	0	108	57	14	3	25	1.52
13074824--13075340	266	2.0	254	92	5	847	33	19	24	22	1.97
13088821--13088867	24	2.0	24	84	16	62	51	17	0	31	1.46
13090702--13090737	15	2.4	15	90	0	54	52	0	0	47	1.00
13090861--13090920	31	1.9	32	86	3	86	68	6	11	13	1.39
13091141--13091189	24	2.1	24	96	3	91	61	12	8	18	1.55
13095389--13095451	30	2.1	30	93	0	108	57	14	3	25	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199