genome.fa.s20.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  159  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46677970--46678002	6	5.7	6	85	7	50	15	3	0	81	0.80
46677966--46678002	12	3.2	12	88	3	58	16	5	0	78	0.93
46678714--46678756	23	1.9	22	85	4	59	30	4	2	62	1.28
46679518--46679566	20	2.5	20	93	0	80	46	12	18	22	1.82
46679839--46679991	78	2.0	77	94	2	272	32	13	22	32	1.92
46682279--46682393	40	2.8	41	85	1	160	21	17	29	31	1.96
46682742--46682788	14	3.3	15	82	8	62	27	0	31	40	1.57
46682775--46682815	21	2.0	20	85	4	55	19	0	41	39	1.52
46682807--46682862	7	7.9	7	76	4	58	21	1	46	30	1.62
46682804--46682851	22	2.2	22	88	0	69	16	2	47	33	1.58
46682807--46682876	36	1.9	36	85	0	95	24	1	41	32	1.64
46683268--46683320	19	2.8	18	80	8	61	71	3	3	20	1.17
46683616--46684072	248	1.8	248	86	1	666	32	18	22	26	1.97
46683616--46684074	124	3.7	124	86	0	605	33	18	22	26	1.96
46684255--46684301	16	2.9	16	90	0	67	8	46	14	29	1.74
46684394--46684461	22	3.1	21	75	12	75	26	23	10	39	1.87
46685526--46685576	27	1.9	26	84	4	66	47	0	1	50	1.12
46685765--46685814	17	2.7	19	78	12	59	44	2	0	54	1.11
46685773--46685819	17	2.8	17	83	0	58	40	2	0	57	1.11
46685790--46685830	19	2.2	19	86	8	57	41	2	0	56	1.13
46685867--46686315	9	51.8	9	68	18	249	44	20	2	32	1.63
46685886--46686326	25	18.2	24	73	14	133	44	20	1	32	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46685886--46686294	34	12.4	33	67	19	149	44	20	1	32	1.62
46686029--46686285	41	6.0	41	75	13	153	43	21	2	32	1.65
46685873--46686311	16	28.9	16	65	24	161	44	20	1	32	1.62
46686177--46686311	41	3.2	40	84	6	137	43	21	2	31	1.67
46689813--46689890	11	7.4	11	73	17	58	24	28	2	44	1.67
46689820--46689895	40	1.9	40	88	0	116	26	25	2	46	1.66
46689814--46689914	51	2.0	52	84	5	134	25	25	1	46	1.63
46691893--46691935	13	3.5	13	75	18	56	48	18	0	32	1.48
46691891--46691937	23	2.0	23	95	0	85	46	19	0	34	1.50
46692650--46692699	19	2.7	19	84	9	59	54	6	0	40	1.25
46714520--46714545	13	2.0	13	100	0	52	53	7	0	38	1.30
46717058--46717087	10	3.1	10	95	4	53	43	0	0	56	0.99
46718037--46718075	15	2.7	15	84	7	55	46	20	0	33	1.51
46727176--46727262	39	2.4	36	84	9	106	49	3	3	43	1.36
46727176--46727259	35	2.4	35	83	13	102	50	3	3	42	1.37
46727306--46727340	18	1.9	18	88	0	52	54	8	5	31	1.54
46727312--46727406	3	32.0	3	74	6	86	60	5	2	32	1.31
46727312--46727406	21	4.6	20	81	3	100	60	5	2	32	1.31
46727418--46727482	29	2.2	29	78	13	71	60	3	15	21	1.49
46735632--46735677	21	2.2	20	84	3	56	67	0	8	23	1.18
46735899--46736025	24	5.5	24	70	16	83	46	3	11	38	1.57
46739395--46740107	354	2.0	354	89	0	1095	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46740140--46740205	27	2.4	27	82	0	78	33	18	15	33	1.92
46740494--46740554	32	1.9	32	87	12	90	31	19	24	24	1.98
46745889--46746003	44	2.6	44	85	2	149	35	13	22	27	1.92
46745889--46746022	46	3.0	45	82	4	153	35	14	23	26	1.93
46747841--46747908	32	2.2	31	84	10	86	48	1	2	47	1.26
46748298--46748355	16	3.6	16	90	0	89	41	3	34	20	1.69
46748293--46748362	16	4.4	16	87	0	86	38	2	31	27	1.71
46748696--46748747	15	3.6	15	80	12	56	53	1	0	44	1.11
46748579--46749111	120	4.4	120	96	0	908	49	6	2	42	1.41
46748816--46748867	15	3.6	15	80	12	56	53	1	0	44	1.11
46749070--46749110	16	2.5	17	85	14	52	53	0	2	43	1.13
46751425--46751451	12	2.2	12	100	0	54	37	33	7	22	1.82
46757664--46757700	15	2.4	16	82	17	51	40	2	5	51	1.39
46757707--46757745	21	1.9	20	89	5	60	33	7	2	56	1.41
46757760--46757818	27	2.1	28	87	3	84	27	1	5	66	1.22
46758167--46758210	18	2.5	17	85	3	52	20	4	18	56	1.58
46759669--46759701	15	2.2	15	94	0	57	18	12	21	48	1.80
46776686--46777041	44	7.6	44	67	17	164	33	19	20	26	1.96
46776856--46777042	98	1.9	98	82	2	232	34	19	19	26	1.96
46776686--46777098	142	2.9	142	93	0	684	33	19	20	26	1.96
46780682--46780718	16	2.2	17	86	13	51	54	0	2	43	1.14
46780553--46780958	59	6.8	59	69	12	274	49	4	2	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46780553--46780968	120	3.5	120	97	1	773	48	5	2	43	1.39
46780802--46780838	16	2.2	17	86	13	51	54	0	2	43	1.14
46780572--46780899	61	5.4	60	69	19	245	48	6	3	42	1.43
46780922--46780958	16	2.2	17	86	13	51	54	0	2	43	1.14
46786004--46786067	28	2.3	28	100	0	128	40	9	12	37	1.75
46792144--46792242	47	2.1	48	90	1	155	47	19	19	14	1.82
46793854--46794083	45	5.2	44	69	14	166	26	20	25	27	1.99
46793592--46794139	89	6.2	89	81	3	586	29	20	23	27	1.99
46795785--46795823	21	1.9	21	89	5	62	30	7	5	56	1.49
46795838--46795896	27	2.1	28	87	3	84	27	1	5	66	1.22
46796243--46796286	18	2.5	17	85	3	52	20	4	18	56	1.58
46810193--46810258	29	2.2	31	86	5	91	40	9	10	39	1.71
46810835--46810889	27	2.0	27	100	0	110	14	18	18	49	1.80
46811091--46811135	16	2.8	16	96	0	81	42	4	31	22	1.73
46811091--46811143	16	3.3	16	85	15	74	41	5	30	22	1.77
46811123--46811208	46	1.9	44	88	4	127	25	8	27	38	1.84
46811377--46811410	17	2.0	17	100	0	68	58	0	0	41	0.98
46813955--46815183	131	9.4	131	91	2	1907	29	25	18	26	1.98
46814105--46814548	44	10.2	44	63	13	114	30	25	18	25	1.98
46813955--46815183	394	3.1	391	91	2	1955	29	25	18	26	1.98
46816458--46816490	14	2.4	14	90	5	50	15	21	0	63	1.30
46824057--46824195	59	2.4	58	85	4	181	37	20	17	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46828630--46828655	10	2.6	10	100	0	52	53	0	0	46	1.00
46832723--46832749	14	1.9	14	100	0	54	55	44	0	0	0.99
46835187--46835249	32	2.0	32	100	0	126	33	12	25	28	1.92
46837324--46837374	24	2.1	24	82	7	59	25	5	0	68	1.12
46837563--46837794	114	2.0	113	88	0	338	26	21	26	25	2.00
46837844--46838224	114	3.4	113	84	3	514	25	20	25	28	1.99
46838689--46838776	26	3.3	26	84	9	108	27	4	6	61	1.41
46841869--46842295	114	3.8	114	85	2	511	24	21	26	26	1.99
46841869--46842290	227	1.9	228	83	1	560	24	21	26	27	2.00
46842720--46842763	20	2.1	21	87	4	63	29	0	25	45	1.54
46843014--46843047	14	2.4	14	90	0	50	20	0	47	32	1.51
46843026--46843292	88	3.1	89	85	5	341	29	2	26	41	1.68
46843476--46843641	84	2.0	84	87	0	242	28	18	22	30	1.97
46843984--46844186	84	2.4	84	84	4	225	31	17	20	30	1.96
46844025--46844230	84	2.5	84	84	6	251	27	18	19	33	1.96
46844455--46844705	84	3.0	81	82	6	243	31	15	20	32	1.94
46843416--46844927	540	2.8	540	91	1	2393	29	15	19	34	1.93
46844550--46844772	84	2.7	84	88	3	308	27	17	21	34	1.95
46846295--46846408	47	2.5	45	87	8	162	39	12	2	45	1.56
46846374--46846482	39	3.1	33	82	15	105	43	11	0	44	1.45
46846374--46846482	18	6.1	18	76	17	104	43	11	0	44	1.45
46846389--46846484	39	2.5	37	88	9	133	42	10	1	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46846585--46846642	30	1.9	30	82	6	73	46	13	5	34	1.66
46846603--46847000	9	45.3	9	66	20	116	48	17	1	32	1.56
46846629--46846956	16	19.9	16	66	22	130	49	17	1	31	1.56
46846749--46846864	44	2.6	46	86	5	173	50	16	0	31	1.51
46846765--46846834	21	3.2	21	76	7	86	52	14	0	32	1.41
46846603--46846971	25	15.0	25	68	20	126	48	17	1	32	1.57
46849176--46849470	43	6.9	43	87	0	349	28	20	26	24	1.99
46851833--46851865	14	2.4	14	85	5	50	75	6	0	18	1.00
46852582--46852651	36	1.9	36	85	8	97	41	1	1	55	1.17
46852751--46852804	22	2.5	21	78	6	63	74	1	1	22	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199