genome.fa.s20.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  112  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31789180--31789287	39	2.8	40	81	7	123	21	23	20	35	1.96
31794778--31794885	44	2.5	44	80	3	119	26	21	22	29	1.99
31807827--31807881	3	18.3	3	81	7	67	61	1	1	34	1.17
31807826--31807880	27	2.1	27	89	3	85	60	1	1	36	1.18
31811205--31811243	20	1.9	21	85	15	55	23	0	20	56	1.42
31811817--31811871	17	3.2	16	75	10	56	41	0	3	54	1.18
31812216--31812247	16	2.1	16	88	11	50	40	0	9	50	1.35
31811692--31812497	399	2.0	399	95	1	1438	39	8	8	44	1.64
31813548--31813686	32	4.4	32	83	4	156	38	18	21	21	1.94
31813729--31813793	27	2.5	26	83	14	80	33	24	23	18	1.96
31813856--31813986	24	5.5	23	81	8	97	44	22	7	25	1.79
31814055--31814151	27	3.6	27	84	1	124	29	20	16	32	1.95
31818164--31818213	17	2.9	17	90	0	82	42	6	26	26	1.78
31823222--31823260	14	2.6	16	88	8	55	30	5	20	43	1.73
31831683--31831800	51	2.3	49	80	8	121	57	5	5	30	1.46
31832058--31832100	3	14.3	3	80	9	52	65	0	2	32	1.06
31832060--31832116	15	3.9	15	79	9	55	66	1	1	29	1.12
31832321--31832359	19	2.0	21	85	10	55	69	5	10	15	1.34
31832562--31832616	19	2.7	21	75	11	69	36	10	9	43	1.72
31832575--31832617	19	2.3	19	95	0	77	37	13	9	39	1.78
31832553--31832604	21	2.5	20	76	20	52	34	15	5	44	1.70
31833147--31834766	132	12.3	132	89	0	2440	25	24	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31833147--31834766	395	4.1	396	92	0	2568	25	24	18	31	1.98
31833147--31834770	527	3.1	528	89	1	2479	25	24	19	31	1.98
31835976--31836014	16	2.4	16	86	4	51	0	23	2	74	0.94
31835985--31836020	10	3.4	10	92	7	54	0	19	0	80	0.71
31840817--31840868	12	4.1	12	80	14	52	73	0	0	26	0.84
31863962--31864308	40	8.7	40	96	0	622	21	27	21	30	1.98
31866907--31867131	40	5.7	40	82	5	260	25	21	27	25	2.00
31866988--31867150	40	4.1	40	87	3	127	25	22	28	23	1.99
31866981--31867164	80	2.3	80	82	5	205	27	21	27	24	1.99
31872324--31872417	27	3.5	26	80	2	98	40	18	23	18	1.91
31872333--31872398	26	2.5	27	82	2	80	40	21	21	16	1.91
31874643--31874803	62	2.6	62	86	2	207	22	27	26	22	1.99
31882534--31882585	26	2.0	27	88	3	79	71	1	17	9	1.22
31892597--31892636	17	2.3	18	82	4	55	20	42	27	10	1.83
31893279--31893320	20	2.0	20	86	9	57	64	16	2	16	1.40
31911557--31911767	40	5.3	40	87	2	291	23	20	27	28	1.99
31915006--31915121	54	2.1	54	95	0	205	23	14	19	42	1.88
31938739--31938968	101	2.3	101	87	1	336	21	31	20	27	1.98
31938730--31938973	50	4.8	50	77	1	227	21	31	19	27	1.97
31940388--31940446	26	2.3	26	79	5	66	27	15	10	47	1.77
31943602--31943677	32	2.5	30	76	19	77	36	5	18	39	1.73
31945477--31945527	12	4.2	12	80	5	59	17	23	5	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31945727--31945921	50	3.9	49	80	5	169	22	27	21	28	1.99
31945776--31945971	50	3.7	50	81	6	203	23	27	21	27	1.99
31951129--31951279	28	5.4	28	86	5	209	30	23	22	23	1.99
31951378--31951428	26	2.0	26	84	0	66	37	25	17	19	1.94
31951641--31951974	81	4.1	80	80	6	338	23	16	17	42	1.88
31951642--31951917	27	10.3	26	81	7	279	22	17	17	43	1.88
31954443--31954567	50	2.5	50	84	1	162	26	25	18	29	1.98
31954443--31954567	25	5.0	24	75	13	101	26	25	18	29	1.98
31954709--31954781	31	2.4	31	82	15	82	47	6	16	28	1.72
31956192--31956224	16	2.1	16	100	0	66	36	6	36	21	1.78
31956457--31956491	18	2.0	18	88	5	54	54	0	0	45	0.99
31956432--31957186	120	6.3	119	95	2	1269	48	4	2	44	1.35
31956575--31956611	16	2.2	17	86	13	51	54	0	2	43	1.14
31956695--31956731	16	2.2	17	86	13	51	54	0	2	43	1.14
31956815--31956851	16	2.2	17	86	13	51	54	0	2	43	1.14
31956935--31956971	16	2.2	17	86	13	51	54	0	2	43	1.14
31957820--31957880	30	2.0	30	100	0	122	26	29	6	37	1.81
31961895--31961940	23	2.0	23	86	0	65	45	21	4	28	1.71
31963145--31963221	39	2.0	37	87	5	109	37	23	19	19	1.94
31963147--31963221	38	2.0	38	87	7	109	37	22	20	20	1.94
31963266--31963418	41	3.7	41	83	0	207	26	21	24	27	1.99
31963841--31963871	7	4.4	7	91	0	53	29	0	35	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31963827--31963871	14	3.1	14	83	3	54	31	0	31	37	1.58
31963964--31964132	90	1.9	88	84	7	225	26	1	28	43	1.62
31968178--31968221	22	1.9	22	86	9	61	56	4	0	38	1.20
31968279--31968475	43	4.6	43	94	0	322	18	18	34	28	1.95
31969947--31969979	16	2.2	16	89	10	52	39	0	9	51	1.34
31974884--31974950	21	3.2	21	68	16	57	20	22	35	20	1.96
31987418--31987609	40	4.8	40	87	3	237	28	28	19	23	1.98
31990878--31990943	28	2.4	28	78	0	78	30	9	25	34	1.87
31996004--31996087	41	2.0	42	95	2	152	29	30	11	27	1.92
31997420--31997588	43	4.0	43	76	10	141	22	17	27	33	1.96
32021708--32021904	43	4.6	43	94	0	322	18	18	34	28	1.95
32023382--32023414	16	2.2	16	89	10	52	39	0	9	51	1.34
32028345--32028411	21	3.2	21	68	16	57	20	22	35	20	1.96
32041086--32041296	40	5.3	40	83	5	241	29	27	19	23	1.98
32044592--32044657	28	2.4	28	78	0	78	30	9	25	34	1.87
32049758--32049842	42	2.0	42	97	0	161	29	31	11	27	1.92
32051179--32051348	44	3.9	44	77	13	133	22	17	27	33	1.96
32051194--32051348	43	3.6	42	75	14	156	23	17	27	31	1.97
32063475--32063530	29	1.9	29	89	7	87	26	16	17	39	1.91
32064679--32064726	24	2.0	25	88	8	73	54	2	2	41	1.24
32064710--32064774	27	2.4	26	87	5	85	63	4	0	32	1.15
32069029--32069074	21	2.2	21	84	0	56	60	0	10	28	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32070214--32070262	20	2.4	21	80	6	57	59	0	2	38	1.09
32070716--32070772	8	7.1	8	76	7	53	38	3	0	57	1.16
32070716--32070770	23	2.4	24	79	14	62	40	3	0	56	1.17
32073397--32073444	15	3.1	15	88	11	78	37	0	6	56	1.25
32073397--32073442	17	2.8	17	93	6	78	36	0	6	56	1.25
32073485--32073519	17	2.1	17	100	0	70	34	0	0	65	0.93
32073601--32073639	18	2.3	17	86	8	53	35	5	0	58	1.20
32073420--32074025	119	5.1	118	92	3	961	42	1	4	51	1.29
32073601--32073643	16	2.6	16	85	7	50	39	4	0	55	1.20
32073844--32073877	17	2.1	17	88	5	52	35	0	0	64	0.94
32073420--32074023	239	2.5	238	94	1	1025	42	1	4	51	1.29
32074156--32074251	45	2.2	44	90	5	149	36	29	4	30	1.76
32074237--32074285	16	3.1	16	76	8	55	24	26	4	44	1.71
32075116--32075244	31	4.0	33	77	12	135	39	3	2	54	1.32
32076249--32076281	3	11.0	3	100	0	66	66	0	0	33	0.92
32078010--32078077	30	2.2	31	85	12	88	52	8	1	36	1.42
32078430--32078671	43	5.7	42	85	4	272	26	30	16	25	1.97
32083512--32083577	21	3.1	21	84	6	80	39	34	0	25	1.56
32083505--32083602	14	7.0	14	73	13	58	39	34	0	25	1.56
32084586--32084958	41	9.1	41	86	4	430	30	31	18	19	1.96
32099755--32099798	13	3.4	13	84	12	63	47	0	22	29	1.51
32099755--32099823	26	2.6	27	81	2	68	44	2	20	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32099931--32099961	7	4.4	7	100	0	62	41	0	16	41	1.48
32102901--32103057	61	2.6	61	81	8	167	22	24	32	20	1.98
32103601--32103699	9	10.6	9	82	8	126	37	29	9	24	1.86
32103599--32103699	38	2.6	39	84	6	136	38	28	8	23	1.85
32103610--32103699	20	4.8	18	82	10	99	37	28	8	24	1.86
32103602--32103699	29	3.4	29	82	10	64	36	29	9	24	1.86
32103697--32103836	37	3.8	37	86	7	194	47	15	3	32	1.63
32103697--32103749	20	2.9	18	75	8	54	49	16	1	32	1.57
32105051--32105090	16	2.5	16	91	0	62	27	5	32	35	1.79
32107505--32107533	4	7.2	4	100	0	58	24	0	0	75	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199