genome.fa.s20.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  121  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34598628--34598708	30	2.7	30	98	0	153	18	17	12	51	1.75
34599451--34599528	40	2.0	41	85	10	108	33	2	3	60	1.28
34599495--34599533	19	2.0	19	90	5	60	35	0	5	58	1.20
34599467--34599528	10	6.6	9	75	12	54	30	1	3	64	1.19
34599457--34599534	20	4.0	20	71	14	56	35	2	3	57	1.30
34599545--34599594	19	2.5	20	81	12	59	38	0	6	56	1.24
34599731--34599786	24	2.3	24	100	0	112	30	17	19	32	1.95
34603261--34603386	27	4.7	26	81	6	135	27	17	26	27	1.98
34603260--34603386	54	2.3	54	82	11	152	28	17	26	27	1.98
34606834--34606983	27	5.5	27	80	6	144	28	28	16	26	1.97
34610457--34610512	24	2.3	24	100	0	112	32	19	17	30	1.95
34610650--34610699	18	2.6	19	84	9	66	54	6	0	40	1.25
34610662--34610704	18	2.5	16	79	17	50	48	4	0	46	1.22
34610709--34610774	20	3.5	19	75	6	71	60	3	1	34	1.21
34610709--34610784	20	4.0	20	71	8	68	57	3	2	35	1.31
34611528--34611608	30	2.7	30	98	0	153	51	12	17	18	1.75
34613432--34613469	18	2.1	18	90	0	58	10	2	39	47	1.52
34615487--34615536	25	2.0	25	100	0	100	28	0	48	24	1.52
34617136--34617168	5	6.6	5	92	0	57	78	0	21	0	0.75
34619639--34619663	13	1.9	13	100	0	50	64	8	8	20	1.46
34635918--34635985	15	4.5	15	81	3	73	35	17	8	38	1.81
34635918--34635985	30	2.2	31	86	2	93	35	17	8	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34640362--34640425	26	2.5	26	86	0	83	21	26	23	28	1.99
34644112--34644296	79	2.3	81	83	9	229	23	22	28	25	2.00
34644112--34644315	40	5.1	40	83	8	231	24	22	27	25	2.00
34644165--34644329	79	2.1	79	83	8	203	25	21	27	25	1.99
34653513--34653853	27	12.8	27	75	7	259	35	18	19	26	1.95
34653509--34653833	54	6.1	54	82	2	332	36	18	18	26	1.94
34654100--34654316	64	3.4	62	79	6	229	21	19	21	37	1.94
34654135--34654336	95	2.1	95	83	3	246	20	19	20	38	1.93
34654103--34654336	32	7.4	32	79	4	199	21	19	20	38	1.94
34654209--34654343	63	2.1	63	85	5	184	20	22	21	34	1.96
34654386--34654438	26	2.0	26	81	0	61	22	26	16	33	1.96
34671653--34672166	9	57.0	9	75	14	445	34	1	18	44	1.59
34671914--34671980	28	2.4	28	97	0	125	35	2	14	46	1.61
34671991--34672085	25	3.7	25	79	10	120	30	3	20	46	1.66
34672185--34672228	23	1.9	23	95	0	79	38	0	18	43	1.50
34672245--34672413	36	5.2	36	65	28	135	42	7	8	42	1.62
34672227--34672413	63	3.0	63	98	0	356	42	7	8	42	1.62
34672385--34672436	13	4.0	13	82	5	61	46	1	7	44	1.43
34674979--34675315	147	2.3	147	80	3	374	37	20	14	27	1.91
34679638--34679668	15	2.1	15	93	0	53	38	6	0	54	1.26
34689131--34689204	31	2.4	31	100	0	148	45	12	14	27	1.80
34693448--34693565	25	4.5	27	69	7	91	25	25	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34693445--34693565	52	2.3	52	89	0	197	25	25	19	28	1.99
34694211--34694258	20	2.4	20	77	19	55	60	4	18	16	1.51
34700117--34700407	50	5.8	50	79	2	282	27	21	28	23	1.99
34705817--34705852	13	2.8	13	100	0	72	33	13	16	36	1.89
34718308--34718345	19	2.0	19	85	10	51	21	42	0	36	1.53
34721317--34721527	40	5.3	40	78	5	223	27	28	20	22	1.99
34721337--34721527	80	2.4	80	96	0	355	26	29	20	23	1.99
34724268--34724475	27	7.8	26	86	3	281	14	20	23	40	1.90
34724267--34724475	80	2.6	80	86	3	294	15	20	23	40	1.90
34745372--34745578	27	7.8	26	86	3	288	14	20	23	41	1.90
34745371--34745578	53	3.9	52	86	5	283	15	20	23	40	1.90
34745371--34745578	80	2.6	79	86	3	299	15	20	23	40	1.90
34760584--34760633	19	2.9	17	75	16	50	12	6	14	68	1.39
34761875--34761913	19	2.1	19	85	9	53	38	2	17	41	1.64
34764588--34764628	11	3.5	11	93	6	64	39	12	9	39	1.76
34765694--34765744	26	2.0	26	100	0	102	15	23	33	27	1.95
34768128--34768493	47	7.7	47	93	2	606	31	9	29	29	1.88
34768611--34768689	37	2.1	37	90	0	122	24	18	31	25	1.98
34770543--34770645	43	2.4	43	100	0	206	22	15	35	26	1.94
34770627--34770700	29	2.5	30	85	10	100	25	14	33	25	1.94
34771057--34771193	40	3.4	39	81	7	123	27	21	26	24	2.00
34771011--34771207	80	2.5	81	80	5	204	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34774610--34775068	47	9.7	47	95	2	803	31	8	29	29	1.87
34775186--34775264	37	2.1	37	90	0	122	24	18	31	25	1.98
34785565--34785642	21	3.7	21	76	17	81	35	8	16	38	1.80
34792631--34792862	44	5.3	43	62	16	107	26	28	24	21	1.99
34792573--34792878	88	3.5	87	92	0	495	28	28	22	19	1.98
34792897--34793785	44	20.8	44	84	6	1159	29	17	24	27	1.98
34792897--34793785	126	6.9	128	84	7	1053	29	17	24	27	1.98
34792892--34793785	170	5.2	169	88	4	1255	29	18	24	27	1.98
34794516--34794631	47	2.5	47	98	0	223	29	30	10	30	1.90
34797024--34797567	44	12.6	44	80	7	600	28	17	25	28	1.98
34797024--34797567	170	3.2	170	90	2	822	28	17	25	28	1.98
34797024--34797520	214	2.3	211	84	7	630	28	17	25	28	1.97
34797643--34797784	50	2.8	50	75	0	131	30	20	21	26	1.98
34797821--34798017	44	4.6	44	69	11	120	28	20	21	28	1.98
34797821--34798072	128	2.0	129	83	2	319	29	20	20	29	1.98
34799332--34799371	20	2.0	20	90	0	62	25	10	0	65	1.24
34799576--34799640	27	2.5	26	76	11	60	26	3	7	63	1.36
34800806--34800848	14	3.1	14	83	12	54	18	2	0	79	0.85
34800806--34800844	18	2.2	18	90	9	62	17	2	0	79	0.84
34801579--34801657	41	1.9	41	86	0	113	44	15	24	16	1.86
34801842--34801920	25	3.2	25	71	10	72	20	40	11	27	1.87
34802176--34802220	22	2.0	23	86	4	65	22	2	11	64	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34802896--34802988	28	3.2	28	67	24	84	45	6	3	45	1.45
34802914--34803008	27	3.2	31	65	24	76	41	4	4	50	1.41
34802878--34803026	59	2.5	59	97	0	280	43	5	3	47	1.42
34802924--34803028	31	3.4	31	67	15	83	45	4	2	46	1.39
34803023--34803105	43	1.9	43	95	0	148	46	9	4	38	1.58
34811088--34811576	247	2.0	247	90	0	771	24	16	28	30	1.97
34811499--34811537	18	2.1	19	85	4	53	28	15	15	41	1.87
34811806--34811832	6	4.5	6	100	0	54	14	0	0	85	0.61
34814509--34814589	25	3.2	25	75	3	74	37	12	16	34	1.86
34816672--34816696	12	2.1	12	100	0	50	24	0	24	52	1.48
34822450--34822532	43	1.9	43	85	4	114	34	28	12	24	1.91
34822502--34822583	43	1.9	43	82	0	101	29	18	19	32	1.95
34825689--34825847	54	3.0	51	78	15	153	22	18	21	37	1.94
34825717--34825847	53	2.5	53	91	1	208	21	19	21	38	1.94
34825716--34825847	27	4.9	27	88	1	203	21	18	21	37	1.94
34835499--34835541	2	21.5	2	95	0	77	0	2	46	51	1.13
34837314--34837371	19	2.7	22	84	10	68	37	8	15	37	1.78
34838255--34838310	28	2.0	28	100	0	112	46	3	17	32	1.66
34853239--34853415	27	6.5	27	81	3	167	25	15	29	28	1.96
34853239--34853394	82	1.9	81	82	3	197	26	16	30	27	1.96
34853239--34853415	54	3.3	54	80	4	187	25	15	29	28	1.96
34853235--34853415	82	2.2	81	79	2	193	26	16	29	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34855871--34855950	32	2.5	32	79	0	97	36	27	22	13	1.92
34855905--34856057	80	1.9	80	90	2	245	35	26	20	16	1.94
34856199--34856288	24	3.8	24	83	0	117	48	20	5	25	1.70
34856270--34856346	26	3.0	25	80	14	77	36	20	18	24	1.95
34856330--34856820	27	18.1	27	79	1	444	22	20	20	37	1.95
34856330--34856820	81	6.0	81	82	3	502	22	20	20	37	1.95
34864719--34864760	22	1.9	22	90	9	68	30	0	0	69	0.89
34865148--34865409	108	2.5	105	80	9	318	26	1	14	57	1.47
34869078--34869291	112	1.9	108	84	5	277	57	15	1	25	1.48
34870416--34871017	105	5.8	102	82	10	668	58	14	1	25	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199