genome.fa.s20.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  169  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49442178--49442260	24	3.4	25	77	9	82	19	27	21	31	1.97
49442307--49442377	25	2.8	25	78	6	63	19	25	22	32	1.98
49442757--49442803	23	2.0	23	87	0	67	38	19	4	38	1.71
49446048--49446911	129	6.7	129	91	0	1322	24	22	19	32	1.97
49446874--49447169	44	6.7	44	89	0	414	23	25	21	29	1.99
49448429--49448470	21	2.0	22	85	4	59	14	11	0	73	1.09
49448430--49448461	14	2.2	15	94	5	57	12	9	0	78	0.97
49449313--49449359	21	2.3	21	85	7	62	2	21	2	74	1.03
49449350--49449418	6	11.7	6	83	9	70	13	7	10	69	1.36
49449348--49449427	23	3.4	23	75	1	79	13	6	10	70	1.34
49454966--49455002	14	2.7	14	88	12	51	81	2	10	5	0.96
49463309--49463357	20	2.7	18	77	22	57	51	4	2	42	1.32
49463309--49463405	37	2.6	38	77	18	98	51	4	3	41	1.36
49465799--49465915	61	1.9	61	84	5	155	41	9	12	35	1.76
49472423--49472610	96	2.0	96	83	0	241	32	17	14	36	1.89
49482378--49482408	12	2.6	12	89	0	53	32	32	0	35	1.58
49485700--49486021	109	3.0	108	90	2	488	35	17	15	31	1.91
49486076--49486106	15	2.1	15	93	0	53	64	6	9	19	1.45
49486491--49486547	18	3.2	18	80	5	62	63	1	3	31	1.22
49486513--49486547	17	2.0	18	88	5	54	68	0	0	31	0.90
49486627--49486656	12	2.5	12	94	0	51	63	6	0	30	1.20
49488341--49488665	44	7.4	44	66	19	158	28	26	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49488072--49488773	132	5.3	131	90	0	1017	28	23	17	30	1.97
49488070--49488772	263	2.7	264	90	0	1059	28	23	17	31	1.97
49488768--49489238	46	10.2	46	92	0	771	31	26	16	25	1.97
49490461--49490496	6	6.2	6	87	6	56	0	22	0	77	0.76
49490461--49490494	11	3.0	11	91	4	50	0	20	0	79	0.73
49490463--49490496	17	2.0	17	94	0	59	0	20	0	79	0.73
49490864--49490925	7	9.0	7	77	13	58	3	3	14	79	0.99
49490854--49490925	8	9.0	8	77	13	60	2	2	13	80	0.93
49490889--49490921	12	2.8	12	100	0	66	6	0	15	78	0.93
49490875--49490923	19	2.5	19	80	3	62	4	2	14	79	0.97
49494148--49494467	109	3.0	110	85	3	418	35	18	15	31	1.92
49494516--49494546	15	2.1	15	93	0	53	64	6	9	19	1.45
49495076--49495105	12	2.5	12	94	0	51	63	6	0	30	1.20
49497014--49497049	17	2.1	17	89	0	54	44	5	0	50	1.25
49500006--49500046	6	6.8	6	88	0	55	34	12	34	19	1.89
49505148--49505219	33	2.2	33	82	7	85	51	15	6	26	1.68
49505422--49505450	13	2.2	13	100	0	58	34	13	6	44	1.71
49505852--49505904	17	2.9	17	71	15	52	73	0	9	16	1.08
49506484--49506530	23	2.0	23	83	0	58	4	31	42	21	1.72
49507498--49507854	96	4.0	86	83	5	275	30	18	15	35	1.92
49507429--49507854	44	9.5	44	76	7	320	30	18	16	34	1.93
49507457--49507762	132	2.3	131	84	4	375	29	19	16	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49507689--49507899	96	2.2	96	99	0	413	32	16	15	35	1.91
49507948--49508143	44	4.3	44	70	17	112	29	20	17	33	1.95
49508019--49508186	51	3.4	51	75	9	186	30	17	19	32	1.94
49508006--49508186	96	1.9	96	91	0	299	30	18	17	33	1.94
49516304--49516359	28	2.1	27	83	6	69	67	1	7	23	1.24
49516386--49516462	38	2.1	36	82	4	91	68	0	7	23	1.15
49517994--49518728	44	16.2	44	73	8	450	29	18	17	33	1.94
49518003--49518414	89	4.6	88	80	2	369	29	19	16	34	1.94
49518003--49518414	133	3.1	133	80	1	403	29	19	16	34	1.94
49518582--49518775	51	3.9	50	70	15	143	29	17	18	34	1.94
49518608--49518781	96	1.8	96	89	2	278	29	17	19	33	1.95
49524774--49525228	44	10.3	44	80	2	435	28	18	17	35	1.94
49524774--49525221	89	5.1	88	81	2	486	28	18	17	35	1.94
49524801--49525228	133	3.2	131	79	4	455	29	17	17	34	1.94
49525353--49525384	15	2.1	15	94	0	55	15	6	9	68	1.36
49526457--49526494	20	2.0	20	84	5	51	57	5	5	31	1.43
49534344--49534562	76	2.9	75	78	4	233	38	19	14	27	1.90
49535753--49535810	28	2.1	28	100	0	116	27	10	6	55	1.59
49536040--49536240	76	2.7	75	75	9	194	37	16	16	28	1.91
49539095--49539191	42	2.3	42	85	3	133	22	14	28	34	1.94
49539530--49539571	17	2.6	16	88	7	59	42	4	2	50	1.36
49539530--49539571	16	2.7	15	85	7	57	42	4	2	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49545478--49545530	23	2.3	23	96	0	97	32	16	33	16	1.92
49546875--49546920	19	2.4	21	79	20	64	50	0	0	50	1.00
49551016--49551072	19	2.9	19	70	14	53	40	1	1	56	1.20
49551016--49551072	10	5.8	10	78	12	55	40	1	1	56	1.20
49564590--49564657	27	2.5	26	75	15	68	55	4	8	30	1.50
49564999--49565064	14	4.5	14	80	12	53	65	4	1	28	1.21
49566302--49566327	13	2.0	13	100	0	52	7	0	30	61	1.24
49567889--49567996	15	7.2	15	65	12	69	45	7	21	25	1.78
49567885--49567996	30	3.7	30	95	0	197	46	7	21	25	1.76
49572591--49572698	15	7.2	15	67	12	69	43	6	21	28	1.77
49572585--49572708	30	4.1	30	88	1	176	42	5	23	28	1.76
49576945--49576976	6	5.3	6	92	0	55	50	0	31	18	1.48
49576940--49576977	18	2.1	19	95	5	69	55	0	28	15	1.41
49577120--49577195	26	2.9	26	84	3	82	39	10	15	34	1.82
49588201--49588284	37	2.2	37	91	2	132	44	4	5	45	1.49
49600735--49600783	24	2.0	25	84	11	66	2	22	6	69	1.21
49604791--49605003	82	2.6	82	80	6	236	18	19	25	37	1.94
49604793--49605004	41	5.2	41	75	7	182	18	19	25	36	1.94
49609985--49610103	6	18.0	6	75	17	87	36	1	49	12	1.51
49610055--49610103	13	3.7	13	84	10	64	34	2	51	12	1.51
49610191--49610628	30	15.1	30	86	8	613	50	0	10	38	1.41
49610191--49610628	147	3.0	144	88	6	647	50	0	10	38	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49611037--49611089	21	2.5	21	93	0	88	30	37	9	22	1.86
49615026--49615126	42	2.4	43	72	19	97	33	4	2	58	1.35
49616260--49616319	20	3.0	20	82	4	68	56	11	16	15	1.67
49616282--49616330	20	2.5	20	76	6	55	61	8	14	16	1.56
49616351--49616402	20	2.6	19	82	14	61	55	11	15	17	1.68
49616406--49616446	20	2.0	21	90	4	66	58	19	12	9	1.61
49616683--49616735	19	2.7	21	75	16	60	52	3	11	32	1.55
49617534--49617574	21	1.9	22	90	5	66	36	0	4	58	1.20
49620949--49620996	2	24.0	2	100	0	96	0	50	0	50	1.00
49622150--49622224	31	2.4	31	89	8	109	17	14	6	61	1.54
49628212--49628261	24	2.1	24	92	0	82	42	4	20	34	1.70
49634845--49634887	22	2.0	22	85	0	59	32	23	16	27	1.96
49643977--49644320	189	1.8	189	90	2	557	29	14	15	39	1.88
49645443--49645643	97	2.1	97	91	1	323	32	18	13	35	1.90
49646649--49646749	42	2.4	42	76	0	112	25	15	17	40	1.90
49646675--49646812	43	3.2	43	79	9	129	23	18	21	36	1.95
49646740--49646850	43	2.6	43	83	8	136	19	20	25	34	1.96
49656692--49656736	22	2.0	22	100	0	90	22	20	22	35	1.96
49668539--49668572	10	3.3	10	88	8	50	79	5	14	0	0.91
49668590--49668620	15	2.1	15	100	0	62	74	6	0	19	1.03
49669756--49669837	29	2.8	29	88	0	110	21	29	32	15	1.95
49671790--49671819	3	10.0	3	92	0	51	66	3	0	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49671782--49671845	15	4.3	15	76	11	53	65	6	0	28	1.16
49673359--49673464	44	2.4	44	93	0	176	28	32	17	21	1.96
49673530--49673797	129	2.1	130	85	2	360	26	25	16	31	1.97
49673748--49674003	128	2.0	128	93	0	440	24	23	19	32	1.98
49675214--49675247	14	2.4	14	90	0	50	11	20	0	67	1.21
49676059--49676100	14	3.0	14	82	10	50	11	9	2	76	1.12
49676191--49676241	15	3.3	15	76	15	59	11	7	3	76	1.13
49676175--49676241	31	2.2	32	86	5	93	8	10	4	76	1.15
49676074--49676353	142	2.0	142	95	0	508	11	13	5	70	1.32
49676276--49676354	35	2.3	35	80	6	90	10	10	7	72	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199