genome.fa.s20.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  144  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42137911--42138222	27	11.6	27	84	0	345	42	20	16	20	1.88
42143347--42143392	21	2.1	22	84	4	58	67	2	23	6	1.25
42146822--42146898	32	2.5	31	85	4	100	29	29	18	22	1.97
42148830--42148871	12	3.6	12	80	6	50	19	50	4	26	1.67
42151926--42151979	28	2.0	28	88	3	83	48	1	7	42	1.42
42160937--42160989	23	2.4	22	75	9	54	9	18	1	69	1.25
42160982--42161021	18	2.2	18	86	0	53	10	25	0	65	1.24
42167037--42167173	40	3.4	40	85	2	168	37	18	26	16	1.92
42167178--42167215	20	1.9	20	88	0	58	34	15	31	18	1.92
42170455--42170507	23	2.3	23	83	9	63	33	13	11	41	1.80
42170637--42170661	13	1.9	13	100	0	50	24	0	12	64	1.27
42174332--42174436	53	2.0	53	96	0	192	18	14	20	47	1.82
42180106--42180287	81	2.2	81	95	0	319	45	6	10	37	1.63
42181279--42181324	12	3.8	12	85	2	56	63	2	21	13	1.40
42182587--42182614	13	2.2	13	100	0	56	25	32	0	42	1.55
42192208--42192252	19	2.3	19	92	3	72	40	0	2	57	1.11
42195550--42195589	20	2.0	21	90	5	64	70	0	25	5	1.08
42197530--42197664	45	3.0	44	84	2	171	20	14	28	36	1.92
42205906--42205944	11	3.5	11	82	10	53	69	10	0	20	1.17
42207130--42207224	9	11.2	9	72	15	60	61	1	3	34	1.19
42207162--42207244	21	4.0	21	78	10	82	63	0	2	33	1.07
42207160--42207244	9	9.6	9	75	19	63	63	0	2	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42207174--42207244	19	3.6	19	78	16	58	64	0	2	32	1.08
42207162--42207267	22	5.0	20	73	16	65	61	0	2	35	1.11
42207939--42207977	17	2.3	17	86	8	53	23	2	5	69	1.21
42211015--42211097	26	3.2	26	87	0	112	26	21	26	25	2.00
42225301--42225476	72	2.4	72	85	2	228	31	25	15	27	1.95
42228606--42228852	40	6.2	40	87	1	309	29	28	19	22	1.98
42242793--42243039	40	6.2	40	89	1	327	29	28	19	22	1.98
42250703--42250847	74	2.0	74	98	0	281	17	27	24	31	1.97
42257649--42257724	33	2.3	33	97	0	143	26	21	18	34	1.96
42263115--42263167	23	2.4	22	76	20	56	9	18	1	69	1.25
42277343--42277501	45	3.6	45	83	5	173	34	27	14	23	1.94
42281333--42281429	30	3.2	30	75	2	106	28	26	15	28	1.96
42283163--42283188	12	2.2	12	100	0	52	76	7	0	15	0.99
42284155--42284215	21	2.8	22	78	9	72	77	1	16	4	1.03
42284155--42284204	6	8.2	6	83	14	50	76	2	18	4	1.04
42284265--42284295	12	2.6	12	100	0	62	45	12	16	25	1.83
42286449--42286544	30	3.2	30	75	4	106	28	27	15	29	1.96
42303414--42303514	40	2.5	40	85	4	125	24	21	27	25	1.99
42320141--42320171	15	2.1	14	94	5	53	0	38	0	61	0.96
42320849--42321091	27	9.0	27	80	7	244	44	20	18	16	1.86
42320867--42321107	81	3.0	81	80	3	279	43	20	19	16	1.88
42321412--42321534	28	4.4	28	83	2	131	21	26	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42326221--42326248	13	2.2	13	100	0	56	21	0	25	53	1.46
42327540--42327767	27	8.4	27	82	5	246	42	21	18	17	1.89
42327541--42327767	81	2.8	79	84	5	278	43	21	18	17	1.88
42327925--42327975	26	2.0	26	92	0	84	11	23	27	37	1.90
42328079--42328137	28	2.1	28	87	0	82	22	27	22	28	1.99
42328084--42328144	28	2.2	28	81	0	77	24	26	21	27	1.99
42356325--42356358	9	3.7	9	88	7	50	5	23	44	26	1.76
42364050--42364114	33	2.0	33	96	0	121	18	6	33	41	1.75
42369100--42369180	24	3.4	24	70	14	78	41	14	17	25	1.88
42369001--42369200	47	4.2	48	75	15	202	43	16	15	26	1.86
42373801--42374022	40	5.6	39	81	3	203	24	29	21	24	1.99
42373799--42373969	78	2.2	79	83	3	218	25	30	21	23	1.99
42381702--42381871	40	4.3	40	85	0	207	24	30	21	23	1.99
42385616--42385664	10	4.9	10	78	9	55	28	16	30	24	1.96
42385616--42385664	20	2.5	20	86	6	73	28	16	30	24	1.96
42386528--42386599	33	2.2	33	84	0	90	30	16	19	33	1.94
42390107--42390155	20	2.5	20	75	0	53	26	12	32	28	1.92
42396008--42396039	16	2.0	16	93	0	55	25	15	0	59	1.36
42396267--42396457	51	3.8	51	78	5	217	31	27	15	25	1.96
42396265--42396449	101	1.8	100	85	8	257	31	27	16	24	1.96
42402275--42402303	12	2.5	12	94	5	51	24	3	10	62	1.43
42403076--42403151	36	2.1	36	85	4	100	27	9	28	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42423147--42423190	21	2.1	21	100	0	88	27	9	9	54	1.62
42426010--42426216	59	3.5	58	77	9	206	26	22	14	36	1.93
42429888--42429919	16	2.0	16	93	0	55	37	28	3	31	1.73
42432126--42432210	33	2.7	32	84	10	97	24	25	24	24	2.00
42432346--42432397	26	2.0	26	92	0	86	42	26	19	11	1.85
42432557--42432928	27	13.9	26	78	5	183	20	19	19	41	1.91
42432572--42432880	27	11.5	28	79	8	243	20	20	17	42	1.90
42432627--42432817	80	2.4	81	85	3	251	21	22	16	39	1.92
42432589--42432811	107	2.1	108	84	4	290	21	20	17	40	1.91
42432572--42432928	54	6.6	54	78	7	300	19	19	18	42	1.90
42432572--42432880	81	3.8	80	81	3	334	20	20	17	42	1.90
42435167--42435262	28	3.4	28	81	8	113	29	23	22	23	1.99
42435373--42435440	26	2.6	26	85	0	73	42	22	20	14	1.88
42435392--42435443	26	2.0	26	96	0	95	38	25	23	13	1.91
42435576--42435635	27	2.2	27	81	0	66	23	15	21	40	1.91
42435586--42435700	27	4.3	27	80	9	119	19	15	18	46	1.84
42436233--42436516	41	7.0	41	84	2	304	32	16	29	21	1.95
42436230--42436516	82	3.5	82	84	3	348	32	16	29	20	1.95
42436373--42436440	21	3.3	21	66	12	59	29	13	33	23	1.93
42436373--42436509	21	6.8	20	63	12	57	29	15	32	21	1.94
42439984--42440085	20	5.1	20	75	4	89	10	26	20	42	1.85
42457847--42458040	91	2.1	90	84	3	264	25	23	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42464239--42464277	20	1.9	21	89	5	62	43	12	0	43	1.42
42468884--42469003	56	2.1	56	95	0	222	45	8	23	23	1.80
42480911--42481088	27	6.6	27	81	5	171	29	27	15	27	1.96
42489033--42489210	27	6.6	27	81	5	171	29	27	15	27	1.96
42518017--42518085	25	2.8	26	78	12	74	31	27	20	20	1.97
42525114--42525177	25	2.6	25	87	5	94	31	23	18	26	1.98
42539156--42539184	4	7.5	4	92	7	51	79	0	20	0	0.74
42544734--42544811	39	2.0	38	82	2	93	32	28	15	24	1.95
42544882--42544910	14	2.1	14	100	0	58	37	34	6	20	1.80
42549731--42549822	25	3.7	25	84	5	89	28	22	21	27	1.99
42549760--42549824	25	2.6	25	90	0	94	26	23	23	27	2.00
42551059--42551116	25	2.3	25	87	0	80	36	22	18	22	1.95
42551532--42551557	8	3.2	8	100	0	52	46	23	0	30	1.53
42555837--42555893	29	2.0	29	85	0	78	26	14	26	33	1.94
42560033--42560068	14	2.6	14	91	4	56	38	33	0	27	1.57
42563663--42563762	39	2.6	38	85	1	128	49	10	5	36	1.58
42570721--42570772	23	2.3	22	75	21	54	9	23	1	65	1.32
42572548--42573212	40	16.6	40	92	1	1093	24	28	20	27	1.99
42576410--42576435	9	2.9	9	100	0	52	11	0	11	76	1.01
42578115--42578169	20	2.8	20	91	0	92	5	25	21	47	1.72
42587341--42587661	47	6.7	47	91	3	484	28	29	8	33	1.86
42587341--42587661	96	3.4	96	87	6	501	28	29	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42587355--42587661	143	2.1	142	88	5	467	28	29	8	33	1.87
42595632--42595669	19	2.0	19	94	0	67	36	5	23	34	1.78
42597978--42598007	2	15.0	2	100	0	60	50	0	0	50	1.00
42601156--42601191	17	2.2	17	90	5	56	55	19	0	25	1.43
42607222--42607310	43	2.1	43	97	0	169	19	17	12	50	1.77
42610177--42610259	41	2.0	41	90	4	132	50	10	14	24	1.74
42615184--42615223	18	2.1	18	86	9	53	27	20	10	42	1.83
42615223--42615268	3	15.3	3	100	0	92	32	0	0	67	0.91
42616001--42616038	15	2.4	17	86	8	53	28	0	2	68	1.03
42617337--42617458	43	2.8	43	87	2	147	24	17	27	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199