genome.fa.s20.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  21  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6770183--6770234	7	7.7	7	95	2	72	78	0	15	5	0.92
6776118--6776199	24	3.4	24	94	0	146	21	19	20	37	1.94
6776096--6776196	48	2.1	48	85	3	132	21	20	22	34	1.97
6796287--6796594	106	2.9	105	87	2	436	36	20	15	27	1.93
6797197--6797222	4	6.5	4	100	0	52	76	0	0	23	0.78
6799831--6799866	19	1.9	18	88	5	54	58	2	0	38	1.13
6800239--6800333	47	2.0	47	89	4	147	31	16	4	47	1.66
6807638--6807725	45	2.0	45	90	0	140	31	26	18	23	1.97
6807736--6807918	51	3.6	50	77	4	181	30	27	17	24	1.97
6807730--6807952	101	2.2	100	77	8	236	30	27	15	26	1.96
6812467--6812508	15	2.8	16	82	10	52	4	7	14	73	1.21
6814764--6814800	19	1.9	19	88	0	56	35	0	0	64	0.94
6826662--6826707	24	1.9	24	86	8	67	47	4	6	41	1.49
6826673--6826724	24	2.2	24	82	6	61	50	3	3	42	1.39
6834433--6834511	37	2.1	37	90	0	122	25	31	18	24	1.98
6834629--6834947	47	6.7	47	97	1	575	30	29	8	31	1.87
6842074--6842147	23	3.3	23	86	3	114	18	21	27	32	1.97
6842075--6842140	22	3.0	22	90	2	105	18	22	27	31	1.97
6848540--6848632	39	2.5	37	80	7	98	27	29	22	20	1.98
6848988--6849017	15	2.0	15	93	0	51	56	6	0	36	1.26
6849680--6849705	11	2.4	11	100	0	52	0	42	7	50	1.31
6850053--6850095	21	2.0	21	81	0	50	58	6	0	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6851144--6851273	21	6.2	21	72	5	75	43	17	20	18	1.88
6851129--6851243	42	2.7	42	86	2	160	42	19	22	15	1.88
6853856--6853898	14	3.1	14	80	3	52	0	20	0	79	0.74
6855267--6855319	21	2.5	21	84	6	63	37	7	16	37	1.78
6856327--6856361	19	1.9	18	88	11	54	74	2	14	8	1.17
6856388--6856457	29	2.3	29	85	4	86	22	15	15	45	1.84
6857486--6857544	23	2.6	23	83	5	75	16	3	5	74	1.13
6862955--6863013	31	1.9	31	89	6	93	35	15	20	28	1.93
6863006--6863176	90	1.9	90	79	3	193	34	21	21	22	1.97
6870143--6870177	16	2.1	17	89	5	54	42	8	0	48	1.33
6872618--6872836	82	2.7	82	91	3	289	22	29	21	26	1.99
6872622--6872808	41	4.6	41	95	1	331	20	29	21	28	1.98
6891767--6891875	40	2.8	40	85	1	157	34	21	22	21	1.96
6891935--6892350	41	10.2	41	89	2	595	17	19	32	29	1.95
6892265--6892340	40	1.9	40	88	0	116	21	17	23	38	1.93
6892554--6892601	22	2.2	21	77	3	51	20	0	31	47	1.50
6892965--6893002	14	2.7	14	91	0	58	34	0	28	36	1.58
6892944--6893002	21	2.8	21	78	0	64	30	0	30	38	1.57
6895983--6896295	43	7.3	43	82	5	366	20	17	31	30	1.95
6900132--6900230	49	2.0	49	92	3	164	37	23	14	25	1.92
6903060--6903099	12	3.3	12	85	0	53	0	10	5	85	0.75
6909272--6909368	48	2.0	48	100	0	194	16	6	18	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6917967--6917993	11	2.5	11	100	0	54	18	7	14	59	1.58
6922388--6922473	43	2.0	43	97	0	163	39	15	16	29	1.89
6923706--6923746	17	2.4	17	80	19	50	51	2	0	46	1.14
6924295--6924823	125	4.2	126	85	1	708	29	18	21	30	1.97
6924261--6924823	249	2.3	250	90	0	867	29	17	22	30	1.97
6928403--6928437	18	1.9	18	88	0	52	40	14	20	25	1.90
6930163--6930196	18	1.9	18	88	5	52	35	5	2	55	1.39
6930784--6930860	36	2.2	36	97	2	147	41	14	19	24	1.89
6940832--6940871	16	2.5	16	91	0	62	47	2	7	42	1.45
6940875--6940913	16	2.4	16	91	0	60	35	0	7	56	1.28
6941139--6941184	19	2.4	19	88	0	65	65	6	6	21	1.39
6941151--6941199	13	3.8	13	81	5	55	67	10	2	20	1.30
6941246--6941286	20	2.0	20	90	0	64	63	4	7	24	1.40
6941357--6941389	16	2.1	16	94	0	57	69	9	0	21	1.15
6948575--6948609	2	17.5	2	100	0	70	0	0	48	51	1.00
6966415--6966571	23	6.7	23	75	10	113	39	17	15	27	1.90
6966468--6966582	47	2.4	47	86	2	151	41	18	14	25	1.88
6967419--6967547	43	3.0	42	79	17	156	30	28	18	22	1.97
6968902--6968960	10	5.9	10	73	13	50	59	0	3	37	1.14
6969015--6969066	20	2.6	21	75	22	58	67	0	5	26	1.13
6969363--6969396	13	2.6	14	90	9	54	41	11	11	35	1.78
6986437--6986470	9	4.0	9	88	11	54	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6986432--6986482	18	2.8	17	77	19	50	29	3	0	66	1.09
6988685--6988725	21	2.0	20	86	9	57	46	19	21	12	1.82
6988696--6988779	21	4.0	21	68	3	62	44	20	22	13	1.86
6988720--6988791	21	3.4	21	70	0	63	45	18	22	13	1.84
6988781--6988837	21	2.7	22	78	8	73	43	15	17	22	1.87
6988701--6988855	42	3.7	42	79	5	143	44	17	21	16	1.86
6998340--6998397	26	2.2	27	84	9	75	1	29	5	63	1.25
7009489--7009528	16	2.5	16	83	0	53	45	2	7	45	1.45
7009517--7009659	68	2.1	67	93	2	252	41	4	9	44	1.57
7009601--7009628	9	3.1	9	100	0	56	32	0	10	57	1.33
7010495--7010540	11	4.2	11	82	0	56	65	4	6	23	1.35
7010496--7010538	22	2.0	22	95	0	77	62	4	6	25	1.40
7017429--7017851	110	3.8	109	87	3	557	35	18	16	29	1.93
7017442--7017851	222	1.9	217	87	4	599	35	19	15	29	1.93
7018186--7018260	39	1.9	39	83	0	96	52	4	9	34	1.53
7018340--7018381	20	2.1	20	86	0	57	59	2	4	33	1.31
7018391--7018423	3	11.0	3	93	0	57	63	0	3	33	1.10
7019940--7020766	50	16.5	50	70	3	320	23	19	23	33	1.97
7019939--7020655	100	7.2	100	87	0	808	23	20	23	32	1.98
7020490--7020768	150	1.9	150	86	0	405	22	15	25	36	1.94
7023126--7023164	6	6.3	6	83	16	53	0	20	0	79	0.73
7023126--7023167	14	2.7	15	82	14	50	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7023172--7023202	9	3.4	9	95	0	53	9	0	3	87	0.66
7026541--7027074	111	4.8	111	90	2	783	34	18	16	30	1.93
7027568--7027611	20	2.2	20	87	0	61	59	2	4	34	1.30
7027621--7027662	3	14.0	3	89	0	66	64	2	2	30	1.19
7032803--7032887	41	2.1	41	100	0	170	35	0	11	52	1.38
7033491--7033571	29	2.8	28	76	12	83	53	12	16	18	1.73
7035938--7036162	43	5.2	43	84	4	249	28	27	17	26	1.98
7040018--7040052	7	5.0	7	89	0	52	71	2	14	11	1.25
7042216--7042384	86	2.0	85	82	10	209	49	13	4	33	1.62
7042760--7042815	26	2.2	25	75	6	60	53	3	1	41	1.29
7044672--7044701	3	10.0	3	100	0	60	66	0	0	33	0.92
7051750--7051874	34	3.7	33	81	10	144	40	0	13	44	1.49
7051928--7052447	125	4.2	126	87	1	715	37	16	16	29	1.91
7053757--7053796	15	2.7	15	92	0	71	30	15	10	45	1.78
7057544--7057595	25	2.1	24	82	10	61	67	3	1	26	1.18
7057776--7057800	12	2.1	12	100	0	50	40	0	36	24	1.55
7061233--7061305	37	2.0	37	97	2	139	61	0	16	21	1.34
7070085--7070147	21	3.2	21	65	21	64	19	14	19	47	1.82
7070065--7070148	37	2.3	37	97	0	159	19	11	19	50	1.78
7075605--7075690	45	1.9	45	85	0	118	48	15	18	17	1.81
7078551--7078666	56	2.1	56	100	0	232	43	13	15	26	1.84
7080307--7080520	71	3.0	71	86	2	288	46	20	5	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7080774--7080808	18	1.9	18	88	0	52	68	2	11	17	1.31
7083289--7083331	13	3.4	12	83	6	50	83	2	9	4	0.87
7084613--7085051	87	5.0	87	94	0	725	23	23	23	29	1.99
7086578--7086620	13	3.4	12	83	6	50	83	2	9	4	0.87
7089863--7089973	34	3.3	33	85	7	136	43	0	14	42	1.45
7090058--7090406	126	2.8	124	84	2	437	40	15	16	28	1.89
7093401--7093465	20	3.4	20	72	18	57	69	1	0	29	0.98
7102897--7103031	40	3.4	40	71	12	109	25	17	24	31	1.97
7103067--7103093	6	4.5	6	100	0	54	14	33	33	18	1.92
7119570--7119695	51	2.5	51	96	1	227	34	11	24	28	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199