genome.fa.s20.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  115  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32689372--32689447	37	2.1	37	100	0	152	60	2	10	26	1.43
32690936--32690967	16	1.9	17	93	6	57	50	0	25	25	1.50
32694418--32694459	22	2.0	22	90	4	68	14	16	4	64	1.45
32694459--32694524	17	3.5	17	69	21	51	50	3	1	45	1.26
32694650--32694682	17	2.1	17	88	11	52	60	12	6	21	1.53
32697630--32697691	17	3.6	16	77	12	61	61	0	0	38	0.96
32697896--32697946	25	2.0	25	84	0	66	45	13	1	39	1.55
32703507--32703583	33	2.5	30	82	6	91	58	6	0	35	1.24
32711034--32711058	10	2.5	10	100	0	50	24	0	0	76	0.80
32711358--32711401	23	1.9	22	82	17	54	36	25	0	38	1.56
32711447--32711539	45	2.1	45	87	0	132	31	20	19	29	1.97
32711545--32711731	51	3.7	50	77	7	191	29	28	17	24	1.97
32711543--32711727	101	1.8	102	88	5	286	29	28	17	24	1.97
32716539--32716633	39	2.4	39	82	6	104	30	2	21	46	1.63
32716808--32717253	223	2.0	223	92	2	736	21	10	23	43	1.84
32723020--32723072	17	3.2	17	75	19	58	69	15	3	11	1.31
32732849--32732882	16	2.1	16	88	0	50	50	14	17	17	1.79
32735683--32735723	21	2.0	21	90	0	64	29	21	29	19	1.98
32741299--32741357	18	3.1	19	83	11	68	38	0	6	54	1.27
32759231--32759273	11	4.0	11	82	14	54	25	0	11	62	1.29
32759606--32759647	18	2.3	18	87	0	57	40	2	2	54	1.26
32760086--32760151	19	3.3	20	75	16	57	51	1	1	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32760132--32760167	19	1.9	19	88	5	56	55	0	2	41	1.14
32773291--32773370	39	2.0	40	84	15	105	52	3	1	42	1.27
32773290--32773353	19	3.4	17	79	14	65	57	1	1	39	1.17
32775783--32775822	17	2.4	17	86	0	53	60	2	37	0	1.11
32775988--32776039	21	2.5	21	74	0	59	17	0	5	76	0.97
32776002--32776032	16	1.9	16	93	0	53	19	0	6	74	1.03
32775988--32776039	16	3.2	16	75	2	50	17	0	5	76	0.97
32778527--32778607	38	2.1	38	90	0	126	17	48	13	20	1.81
32778852--32779019	48	3.5	48	79	12	177	42	11	10	35	1.75
32782638--32782867	109	2.1	109	84	9	312	59	13	1	25	1.44
32792228--32792447	107	2.1	107	96	0	404	35	19	18	26	1.94
32804525--32804792	104	2.6	105	93	1	450	29	30	20	18	1.97
32805128--32805185	30	1.9	30	82	0	71	29	24	8	37	1.85
32816364--32816447	9	9.3	9	90	0	132	34	10	21	33	1.88
32816720--32816779	16	3.7	16	80	4	66	73	0	1	25	0.93
32816719--32816794	40	1.9	40	86	5	109	72	1	1	25	1.00
32816719--32816789	16	4.4	16	78	3	52	73	1	1	23	1.00
32816793--32816854	20	2.9	21	71	11	54	59	1	0	38	1.07
32817250--32817331	28	2.9	26	77	15	74	26	1	2	69	1.08
32817269--32817331	29	2.2	28	80	2	72	26	1	1	69	1.06
32820310--32820341	2	16.0	2	100	0	64	0	50	0	50	1.00
32821580--32821631	24	2.2	24	89	0	77	36	3	9	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32825922--32825973	24	2.2	24	86	6	70	36	3	11	48	1.58
32843262--32843290	7	4.3	7	95	4	51	31	0	0	68	0.89
32844025--32844069	22	2.0	24	91	8	76	53	0	22	24	1.46
32848100--32848124	13	1.9	13	100	0	50	28	0	0	72	0.86
32853450--32853713	130	2.1	127	89	2	395	15	14	15	54	1.71
32857249--32857383	49	2.8	49	95	0	234	25	22	20	32	1.97
32857249--32857594	50	6.8	50	85	4	288	23	26	19	29	1.99
32861578--32861628	26	2.0	26	96	0	93	27	21	21	29	1.99
32863622--32863846	40	5.7	40	90	3	305	25	21	26	26	2.00
32871036--32871220	40	4.6	39	82	6	203	24	22	27	25	2.00
32871036--32871220	79	2.3	81	82	7	218	24	22	27	25	2.00
32871089--32871253	79	2.1	79	82	6	192	26	20	27	25	1.99
32879105--32879289	79	2.3	81	83	7	227	24	22	27	24	2.00
32879105--32879289	40	4.6	41	82	7	222	24	22	27	24	2.00
32882951--32883209	120	2.2	120	82	7	296	26	21	26	25	1.99
32882951--32883176	40	5.7	40	90	4	298	25	21	26	26	2.00
32886181--32886477	50	5.8	50	84	5	294	22	27	21	28	1.99
32886813--32886869	30	1.9	30	89	3	89	33	24	3	38	1.73
32890522--32890596	31	2.6	28	78	17	91	42	8	16	33	1.77
32890955--32890980	10	2.6	10	100	0	52	46	0	0	53	1.00
32890998--32891047	26	1.9	26	87	0	73	44	2	0	54	1.11
32891149--32891237	46	2.0	46	84	8	121	35	24	6	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32891407--32891438	16	2.0	16	93	0	55	34	0	15	50	1.45
32896695--32896790	39	2.5	39	91	0	165	28	17	15	38	1.91
32896803--32896857	16	3.4	16	74	18	60	21	30	3	43	1.70
32896800--32896860	32	1.9	32	96	0	113	24	29	3	42	1.70
32898204--32898247	16	2.9	15	76	6	52	27	6	6	59	1.49
32906011--32906093	37	2.3	37	86	12	111	40	0	4	54	1.22
32906014--32906118	20	5.6	19	71	18	62	40	0	3	54	1.25
32916026--32916120	11	8.4	11	72	18	61	72	3	18	5	1.17
32916028--32916067	20	2.0	21	85	14	57	72	5	17	5	1.21
32925206--32925236	16	1.9	16	93	0	53	9	9	9	70	1.33
32945914--32945968	11	4.8	12	85	14	73	43	0	32	23	1.54
32945914--32945976	22	2.7	24	77	22	80	42	0	31	25	1.55
32945913--32945976	11	5.6	12	75	20	57	42	0	32	25	1.55
32958196--32958253	29	2.0	30	89	3	91	18	50	1	29	1.57
32958328--32958629	163	1.9	163	88	4	457	36	23	1	38	1.63
32963641--32963782	40	3.6	40	76	11	148	26	23	26	23	2.00
32964007--32964174	47	3.6	47	90	0	255	33	8	30	27	1.86
32966034--32966212	40	4.5	40	94	0	295	24	21	29	25	1.99
32971090--32971147	29	2.0	30	89	3	91	18	50	1	29	1.57
32971222--32971524	163	1.9	165	88	3	461	36	23	1	38	1.63
32976537--32976678	40	3.6	40	80	12	159	24	23	28	23	2.00
32976537--32976684	79	1.9	80	81	7	185	25	22	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32976903--32977017	47	2.4	47	86	0	149	33	8	30	27	1.87
32978879--32979057	40	4.5	40	94	0	304	24	21	28	25	1.99
32984065--32984365	163	1.9	163	87	3	446	35	23	1	39	1.63
32989369--32989510	40	3.6	40	80	12	159	24	23	28	23	2.00
32989369--32989516	79	1.9	80	81	7	185	25	22	28	22	1.99
32989735--32989849	47	2.4	47	86	0	149	33	8	30	27	1.87
32991715--32991893	40	4.5	40	94	0	304	24	21	28	25	1.99
32996774--32996831	29	2.0	30	89	3	91	18	50	1	29	1.57
32996906--32997208	163	1.9	165	88	3	461	36	23	1	38	1.63
33002219--33002360	40	3.6	40	80	12	159	24	23	28	23	2.00
33002219--33002366	79	1.9	80	81	7	185	25	22	28	22	1.99
33002585--33002752	47	3.6	47	90	0	255	33	8	29	28	1.86
33007207--33007292	46	1.9	45	86	13	124	36	25	5	32	1.80
33011911--33012305	47	8.4	47	93	0	655	32	9	29	28	1.88
33012424--33012502	37	2.1	37	88	4	115	26	18	29	25	1.98
33020909--33021637	47	15.6	47	91	4	1050	28	29	8	33	1.87
33021469--33021546	38	2.1	38	100	0	156	29	29	5	35	1.79
33021420--33021595	85	2.0	86	90	4	273	30	27	7	34	1.84
33023506--33023625	56	2.1	56	98	0	231	22	23	9	45	1.81
33038514--33038756	39	6.2	39	81	0	270	19	27	19	33	1.96
33038592--33038724	20	6.8	20	66	10	78	18	30	20	31	1.96
33038594--33038650	19	2.9	20	70	15	55	17	31	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33038512--33038756	78	3.1	76	82	3	301	19	27	19	33	1.96
33042209--33042386	42	4.2	43	71	8	141	35	26	14	24	1.93
33042157--33042303	42	3.5	41	74	5	150	35	24	16	23	1.95
33042151--33042335	85	2.2	84	88	0	262	36	23	16	23	1.94
33042157--33042386	85	2.7	85	83	3	223	36	24	15	23	1.94
33042750--33042811	30	2.1	29	84	3	79	32	20	4	41	1.74
33048011--33048200	85	2.2	84	80	6	213	35	23	15	25	1.94
33048097--33048235	42	3.3	42	76	9	129	36	23	14	25	1.93
33048212--33048264	26	2.0	26	88	0	79	24	33	22	18	1.97
33053385--33053461	14	5.0	15	71	20	52	42	15	9	32	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199