genome.fa.s20.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  137  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39935196--39935292	30	3.2	30	75	2	106	28	27	14	28	1.95
39936190--39936238	20	2.3	20	82	10	53	32	8	14	44	1.74
39937975--39938183	40	5.3	40	88	2	244	25	28	21	24	1.99
39937940--39938236	80	3.7	80	77	10	245	25	27	21	25	1.99
39937975--39938236	120	2.2	119	80	5	280	25	27	21	24	1.99
39938168--39938245	40	1.9	41	82	10	97	26	28	20	24	1.99
39945534--39945742	40	5.3	40	88	2	244	25	28	21	24	1.99
39945499--39945795	80	3.7	80	77	10	245	25	27	21	25	1.99
39945534--39945795	120	2.2	119	80	5	280	25	27	21	24	1.99
39945727--39945804	40	1.9	41	82	10	97	26	28	20	24	1.99
39962821--39962850	15	2.0	15	93	0	51	16	13	0	70	1.18
39965654--39965943	29	9.9	29	74	9	185	23	26	12	37	1.90
39965642--39965937	59	5.1	58	79	6	319	22	26	12	37	1.91
39965644--39965963	88	3.6	86	77	9	313	23	26	12	37	1.90
39965647--39965906	117	2.2	117	85	6	346	22	26	12	37	1.90
39965652--39965978	29	11.1	29	72	9	178	23	26	12	37	1.91
39966029--39966054	12	2.2	12	100	0	52	46	15	7	30	1.74
39970163--39970496	27	12.4	27	84	3	386	42	19	20	17	1.90
39970163--39970491	81	4.1	81	85	1	428	42	19	20	17	1.90
39970640--39970714	26	2.9	27	84	4	82	17	22	22	37	1.94
39970668--39970744	26	3.0	26	84	0	100	14	23	23	38	1.91
39976595--39976769	27	6.4	27	82	3	181	27	14	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39976596--39976746	55	2.8	55	84	3	198	27	15	29	27	1.96
39976596--39976751	82	1.9	81	85	3	215	26	15	29	28	1.96
39976592--39976769	82	2.2	81	80	3	205	27	15	28	29	1.96
39984839--39985013	27	6.4	27	82	3	181	27	14	28	29	1.96
39984840--39984990	55	2.8	55	84	3	198	27	15	29	27	1.96
39984840--39984995	82	1.9	81	85	3	215	26	15	29	28	1.96
39984836--39985013	82	2.2	81	80	3	205	27	15	28	29	1.96
39986662--39986976	29	10.8	29	76	4	265	21	26	13	38	1.91
39986657--39987004	88	4.0	88	84	2	396	22	26	13	37	1.91
39986662--39986978	59	5.4	58	73	5	244	21	26	13	38	1.91
39989165--39989238	36	2.1	36	86	0	103	24	18	13	43	1.86
39989954--39990008	27	2.0	27	100	0	110	63	7	3	25	1.37
39991986--39992235	87	2.9	87	78	1	277	37	13	24	24	1.92
39991986--39992230	29	8.4	29	82	0	213	37	13	24	25	1.91
39993208--39993255	12	4.0	12	100	0	96	25	41	25	8	1.83
39997407--39997454	7	6.9	7	92	0	60	39	6	12	41	1.68
40004492--40004565	36	2.1	36	92	0	121	20	25	17	36	1.94
40004694--40004741	21	2.3	21	92	0	78	56	0	27	16	1.41
40004701--40004747	21	2.2	21	88	0	67	53	2	23	21	1.57
40010608--40010830	119	1.9	120	84	6	301	26	27	21	24	2.00
40010587--40010830	40	6.1	40	84	6	291	25	27	21	25	1.99
40011959--40012078	56	2.1	56	98	0	231	22	23	9	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40018111--40018208	47	2.1	46	84	1	124	40	19	16	23	1.90
40021771--40021802	3	10.7	3	100	0	64	31	0	0	68	0.90
40031411--40031435	11	2.3	11	100	0	50	16	0	0	84	0.63
40035045--40038571	153	23.1	153	85	2	4427	36	18	10	34	1.86
40039809--40039870	3	20.7	3	88	0	61	29	8	35	27	1.85
40043183--40043448	135	2.0	132	88	7	396	28	15	9	46	1.76
40049009--40049063	18	3.1	18	75	0	56	16	36	3	43	1.65
40051600--40051633	15	2.3	15	94	0	59	64	26	0	8	1.22
40051616--40051665	23	2.2	23	85	0	64	60	16	2	22	1.46
40071261--40071416	43	3.6	43	76	8	156	25	19	25	30	1.98
40074252--40074290	18	2.2	18	100	0	78	33	5	17	43	1.72
40075034--40075194	36	4.4	34	78	17	169	31	0	18	49	1.52
40075064--40075162	9	11.2	9	71	10	62	30	1	20	48	1.56
40075034--40075126	45	2.1	43	88	7	134	31	0	18	50	1.47
40075070--40075194	34	3.6	36	87	8	179	32	0	17	49	1.52
40075299--40075325	13	2.1	13	100	0	54	37	11	0	51	1.37
40075837--40075879	19	2.2	20	83	8	61	67	4	2	25	1.22
40075846--40075891	19	2.4	19	85	0	56	73	4	2	19	1.10
40076257--40076488	72	3.2	72	75	3	243	46	12	6	34	1.67
40079533--40079608	27	2.8	27	79	0	80	30	17	38	14	1.89
40092531--40092559	9	3.2	9	100	0	58	68	0	0	31	0.89
40092814--40092873	30	2.0	31	83	9	79	41	0	38	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40093167--40093199	9	3.7	9	95	0	57	33	21	12	33	1.90
40095381--40095449	22	3.1	21	83	12	77	17	5	20	56	1.61
40095412--40095464	23	2.3	23	100	0	106	20	7	26	45	1.78
40096588--40096789	25	8.2	25	75	14	188	50	5	6	37	1.53
40096581--40096763	48	3.8	47	96	1	321	49	6	6	37	1.55
40100202--40100249	24	1.9	25	87	8	71	47	0	2	50	1.12
40100290--40100822	120	4.4	120	98	0	1030	42	2	5	49	1.39
40100415--40100466	15	3.6	15	80	12	56	44	0	1	53	1.11
40100535--40100586	15	3.6	15	80	12	56	44	0	1	53	1.11
40100655--40100706	15	3.6	15	80	12	56	44	0	1	53	1.11
40100784--40100825	15	2.7	16	82	14	52	45	0	2	52	1.13
40100775--40100816	15	2.9	15	82	10	52	47	0	0	52	1.00
40101484--40101559	37	2.0	37	82	7	91	32	1	2	63	1.17
40102257--40102320	17	3.6	17	72	15	58	29	12	12	45	1.79
40102524--40102617	47	2.0	48	93	2	163	17	18	23	41	1.90
40107395--40107458	17	3.6	17	72	15	58	29	12	12	45	1.79
40107662--40107755	47	2.0	48	93	2	163	17	15	23	43	1.87
40110245--40110590	123	2.8	122	90	0	550	29	15	22	32	1.95
40113699--40113723	10	2.5	10	100	0	50	48	0	8	44	1.32
40113707--40113832	55	2.3	55	100	0	252	45	4	11	38	1.62
40113827--40114052	117	1.9	116	96	0	416	28	0	26	44	1.54
40113827--40114098	117	2.4	116	89	7	400	28	0	26	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40113827--40114052	29	7.8	29	97	1	416	28	0	26	44	1.54
40114051--40114120	23	3.7	18	79	18	79	28	0	21	50	1.49
40114159--40114273	36	3.2	36	65	11	92	46	15	4	33	1.66
40114191--40114301	25	4.6	25	68	20	83	45	14	2	37	1.59
40114119--40114303	71	2.6	71	94	0	325	44	14	3	37	1.63
40114701--40114746	18	2.6	18	82	0	56	39	8	30	21	1.84
40115391--40115415	7	3.6	7	100	0	50	60	12	0	28	1.32
40116497--40116548	11	5.0	10	75	9	50	69	0	0	30	0.89
40116497--40116561	31	2.1	31	94	5	114	66	0	0	33	0.92
40116563--40116684	51	2.4	51	90	4	183	43	0	27	28	1.55
40116971--40117026	29	1.9	29	85	0	76	41	14	16	28	1.87
40119466--40119491	11	2.4	11	100	0	52	38	7	0	53	1.30
40119500--40119547	23	2.1	23	92	3	80	35	0	0	64	0.94
40119497--40119562	23	3.0	23	80	8	66	40	0	1	57	1.08
40121227--40121400	85	2.0	85	97	0	330	17	15	15	51	1.76
40123266--40123297	7	4.6	7	100	0	64	25	15	46	12	1.81
40123689--40123907	9	23.9	9	70	16	89	61	2	2	33	1.25
40123709--40123799	17	5.1	17	70	16	51	64	3	3	28	1.25
40123804--40123856	21	2.5	21	81	9	63	52	5	1	39	1.36
40125493--40125558	29	2.3	29	81	5	80	42	16	10	30	1.82
40127242--40127282	23	1.9	22	85	14	59	7	26	7	58	1.51
40130231--40130401	84	2.0	84	98	0	333	37	16	23	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40133224--40133327	9	11.4	9	72	17	81	66	0	0	31	1.05
40133238--40133302	19	3.4	18	81	10	76	64	0	0	35	0.94
40133238--40133329	19	5.0	18	76	11	71	63	1	1	34	1.09
40133838--40133900	31	2.0	32	96	3	119	42	15	9	31	1.79
40139980--40140042	31	2.0	32	96	3	119	42	15	9	31	1.79
40140480--40140514	17	1.9	19	88	11	56	28	5	0	65	1.15
40140498--40140629	48	2.7	47	80	9	142	33	5	0	60	1.24
40140486--40140640	29	5.4	27	71	15	91	32	5	0	61	1.24
40140567--40140639	19	3.8	19	76	5	67	32	4	1	61	1.23
40141055--40141101	15	3.3	14	80	11	51	36	2	12	48	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199