genome.fa.s20.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  34  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10644008--10644047	21	1.9	21	90	10	64	27	0	0	72	0.85
10644435--10644469	14	2.5	14	90	9	54	28	45	2	22	1.67
10644410--10644533	50	2.5	50	80	9	119	34	39	2	23	1.68
10644795--10644821	14	1.9	14	100	0	54	37	37	0	25	1.57
10644906--10645402	114	4.3	114	84	3	604	27	25	21	25	1.99
10644911--10645402	230	2.2	229	84	3	643	27	25	21	25	1.99
10645327--10645463	71	1.9	71	83	5	179	25	20	25	28	1.99
10645318--10645474	72	2.2	71	77	10	167	28	20	24	27	1.99
10645204--10645558	185	1.9	187	86	5	506	27	24	22	25	2.00
10647131--10647156	12	2.2	12	100	0	52	30	0	7	61	1.24
10648464--10648501	20	1.9	20	89	10	60	57	23	7	10	1.58
10649598--10649697	52	1.9	52	93	4	175	26	9	1	64	1.30
10649594--10649769	52	3.2	51	81	12	165	28	7	1	61	1.33
10653996--10654055	24	2.5	24	91	0	102	48	3	18	30	1.64
10660987--10661095	45	2.4	46	82	3	130	29	24	21	24	1.99
10661248--10661389	51	2.8	51	79	0	167	28	25	18	28	1.98
10661401--10661501	51	2.0	51	84	3	132	29	22	16	30	1.96
10661274--10661503	123	1.9	123	87	1	336	27	26	15	30	1.96
10662785--10662912	45	2.8	45	90	0	184	19	21	17	42	1.90
10675105--10675146	3	14.3	3	82	5	50	61	2	2	33	1.21
10676697--10676747	26	1.9	26	84	4	66	3	29	0	66	1.09
10677391--10677417	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10678935--10678977	22	2.0	22	95	0	77	9	20	27	41	1.83
10679049--10679227	43	4.2	43	89	1	234	26	28	17	27	1.98
10679049--10679227	85	2.1	86	85	3	236	26	28	17	27	1.98
10679067--10679251	43	4.3	42	85	5	219	27	28	17	27	1.98
10683810--10683850	21	2.0	21	95	0	73	29	43	0	26	1.55
10684048--10684092	23	1.9	24	90	4	74	64	0	0	35	0.94
10684058--10684099	11	3.8	11	80	20	52	69	0	0	30	0.89
10684130--10684192	22	2.9	22	76	9	58	38	44	0	17	1.49
10684181--10684221	21	2.0	21	85	4	57	39	36	0	24	1.56
10684205--10684245	15	2.9	15	76	23	52	39	29	0	31	1.57
10684478--10684593	41	2.8	40	87	7	162	28	31	20	19	1.97
10684629--10684781	39	3.8	39	74	6	137	22	22	18	35	1.95
10685456--10685639	41	4.5	41	90	5	268	20	21	24	33	1.97
10685470--10685647	81	2.2	81	88	7	263	19	21	25	32	1.97
10686213--10686251	21	1.9	21	89	5	62	20	0	41	38	1.53
10686212--10686245	14	2.4	14	90	9	52	17	0	44	38	1.49
10686233--10686474	89	2.7	89	98	1	461	27	1	23	47	1.61
10686465--10686508	7	6.4	7	84	5	63	11	0	47	40	1.39
10686787--10687555	9	87.8	9	68	21	270	45	14	1	38	1.53
10686787--10687286	34	14.3	34	68	20	218	46	14	1	38	1.51
10686822--10686852	16	1.9	16	100	0	62	45	19	3	32	1.66
10686788--10686883	47	2.0	49	85	6	133	47	13	2	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10686841--10687448	34	18.6	31	72	19	356	45	14	0	39	1.50
10686873--10686970	22	4.6	22	68	16	64	48	13	1	36	1.49
10686996--10687027	16	2.0	16	100	0	64	43	25	0	31	1.55
10687037--10687192	25	6.0	25	69	21	81	44	16	1	38	1.55
10686932--10687142	115	1.8	115	96	0	395	45	15	0	39	1.50
10687111--10687159	16	3.1	16	100	0	98	44	24	0	30	1.54
10686995--10687321	131	2.6	126	84	10	400	44	14	0	40	1.52
10687165--10687321	31	5.2	28	68	22	77	46	12	0	40	1.46
10686841--10687010	31	5.4	31	84	8	209	48	12	0	37	1.46
10687329--10687375	16	2.8	16	93	6	76	44	25	0	29	1.54
10687425--10687536	25	4.6	25	76	8	104	45	16	1	35	1.59
10687431--10687550	16	7.9	16	69	19	96	45	17	1	35	1.58
10692980--10693162	66	2.8	65	84	5	224	41	18	26	13	1.87
10693121--10693192	21	3.4	21	73	3	56	38	16	38	5	1.72
10693132--10693233	42	2.4	42	81	3	107	36	15	40	7	1.77
10693169--10693233	21	3.1	21	77	0	85	30	15	44	9	1.78
10693541--10693746	43	4.8	43	78	3	189	24	19	29	26	1.99
10693559--10693746	87	2.2	87	80	3	218	26	21	28	23	1.99
10693669--10693789	43	2.8	43	87	1	163	23	28	26	22	1.99
10693861--10693903	22	2.0	21	86	4	59	41	27	18	11	1.85
10696763--10696792	4	7.8	4	92	7	53	76	0	0	23	0.78
10697830--10697873	5	8.8	5	100	0	88	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10701744--10701795	23	2.2	23	93	3	86	46	9	13	30	1.75
10701821--10701983	3	53.7	3	71	7	71	58	3	7	29	1.44
10702013--10702059	15	2.9	16	81	9	51	61	4	4	29	1.34
10702072--10702097	7	3.7	7	100	0	52	73	11	0	15	1.11
10702069--10702104	14	2.6	14	83	16	56	72	8	0	19	1.10
10709481--10709527	23	2.0	23	83	0	58	31	0	2	65	1.04
10710993--10711018	12	2.2	12	100	0	52	57	0	7	34	1.27
10712650--10712741	3	30.7	3	95	0	166	32	0	2	65	1.05
10715119--10715145	14	1.9	14	100	0	54	51	3	0	44	1.19
10720001--10720038	19	2.0	19	100	0	76	10	21	10	57	1.61
10721096--10721551	94	4.9	95	79	5	464	30	19	18	31	1.96
10721218--10721304	44	2.0	44	84	8	115	32	22	16	28	1.96
10721095--10721551	187	2.4	189	82	6	529	29	19	19	31	1.96
10738234--10738426	50	3.7	49	80	6	188	27	21	26	24	1.99
10738240--10738426	100	1.8	104	81	6	238	27	20	27	24	1.99
10738675--10738713	12	3.2	12	85	0	51	51	5	23	20	1.67
10738676--10738719	20	2.2	20	87	0	61	52	4	25	18	1.64
10740263--10740335	32	2.3	32	81	6	87	21	24	36	16	1.94
10740912--10741676	382	2.0	382	90	2	1196	33	13	16	36	1.88
10746787--10746817	2	15.5	2	100	0	62	0	0	51	48	1.00
10761386--10761436	3	17.3	3	75	4	50	60	3	1	33	1.26
10762958--10763107	45	3.2	45	66	18	124	29	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10763178--10764091	132	6.9	132	94	0	1535	29	26	16	27	1.97
10763178--10764094	394	2.3	396	93	0	1568	29	26	16	27	1.97
10776946--10776988	22	2.0	22	82	13	54	69	13	2	13	1.28
10780796--10780834	19	2.1	19	90	0	60	30	0	15	53	1.42
10787445--10787482	19	2.0	19	100	0	76	42	15	0	42	1.47
10788250--10788295	23	2.0	24	82	4	58	32	26	0	41	1.56
10788442--10788473	3	10.7	3	100	0	64	65	0	0	34	0.93
10788880--10788913	16	2.0	18	88	11	54	29	20	0	50	1.49
10789209--10789245	15	2.5	14	87	12	56	16	8	0	75	1.02
10789547--10789589	21	2.0	21	81	0	50	58	6	0	34	1.25
10789682--10789744	3	21.7	3	73	12	51	58	3	3	34	1.30
10791842--10792535	44	15.6	44	77	3	595	32	18	20	28	1.96
10791842--10792534	132	5.2	132	82	4	685	32	18	20	28	1.96
10794210--10794243	14	2.2	16	90	10	54	17	2	0	79	0.86
10799167--10799238	35	2.1	35	91	0	117	34	9	13	41	1.78
10802133--10802172	15	2.8	14	85	7	53	27	7	0	65	1.20
10802458--10802483	2	13.0	2	100	0	52	50	0	0	50	1.00
10803919--10803962	21	2.3	18	84	11	52	59	4	6	29	1.44
10805594--10806582	44	21.9	44	75	8	673	29	21	15	32	1.95
10805594--10806533	89	10.4	89	76	7	610	29	21	15	32	1.95
10805647--10806623	133	7.2	133	75	10	568	30	21	15	32	1.95
10806312--10806587	140	2.0	140	81	4	324	29	21	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10814576--10814618	19	2.2	20	87	4	61	44	6	18	30	1.76
10818480--10818509	15	1.9	16	93	6	53	13	0	16	70	1.18
10819085--10819115	9	3.4	9	90	0	53	25	12	22	38	1.90
10819392--10819451	30	2.0	31	86	3	86	20	40	0	40	1.52
10819550--10819590	21	1.9	22	95	5	75	24	24	0	51	1.49
10820097--10820122	5	5.2	5	100	0	52	23	19	19	38	1.93
10820636--10820663	2	14.0	2	100	0	56	50	0	50	0	1.00
10830897--10831062	46	3.6	46	85	1	235	35	3	22	37	1.72
10830935--10831063	23	5.6	23	80	7	154	36	3	21	38	1.69
10831150--10831234	35	2.4	35	96	0	152	22	51	8	17	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199