genome.fa.s20.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  152  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45004651--45004702	20	2.6	20	78	0	50	44	11	5	38	1.65
45011439--45011470	15	2.1	15	94	0	55	28	0	6	65	1.16
45011555--45011615	27	2.3	27	91	0	95	32	19	16	31	1.94
45029725--45029756	17	2.0	17	88	11	50	28	40	12	18	1.87
45031118--45031158	22	1.9	21	85	5	55	53	7	0	39	1.29
45031121--45031193	29	2.5	29	80	8	85	60	5	1	32	1.28
45031405--45031462	27	2.2	26	78	9	64	62	5	3	29	1.33
45032687--45032737	23	2.2	23	85	0	75	29	0	1	68	1.00
45033794--45033838	20	2.2	20	80	7	56	62	2	0	35	1.08
45033810--45033861	27	1.9	27	88	7	79	63	3	0	32	1.12
45034573--45034648	31	2.4	32	88	2	118	32	6	13	47	1.68
45034801--45034868	27	2.3	29	78	14	77	30	8	14	45	1.76
45040607--45040766	68	2.3	69	84	7	202	25	8	24	42	1.82
45041235--45041429	20	9.7	20	69	5	124	38	8	14	37	1.77
45041245--45041382	61	2.3	60	82	9	165	41	8	15	34	1.78
45041232--45041422	101	1.9	101	88	4	287	40	8	15	35	1.78
45041307--45041430	40	3.1	40	88	1	167	37	8	14	39	1.76
45041325--45041445	40	3.0	41	85	6	149	39	8	14	38	1.75
45041483--45041727	112	2.2	112	82	3	296	37	16	13	32	1.87
45041934--45041982	26	1.9	25	83	4	62	44	2	2	51	1.24
45041978--45042033	21	2.7	21	69	20	53	33	3	5	57	1.39
45050066--45050183	43	2.7	43	85	12	170	34	28	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45053034--45053083	18	2.5	20	81	18	61	2	16	2	80	0.91
45054237--45054330	33	2.8	32	76	7	98	32	10	14	41	1.81
45057121--45057182	25	2.5	24	79	12	63	4	12	4	77	1.09
45057184--45057238	19	3.0	19	81	5	51	45	3	0	50	1.19
45060892--45060933	3	13.0	3	85	14	57	2	33	2	61	1.21
45062244--45062277	17	1.9	18	88	5	52	0	35	0	64	0.94
45062235--45062297	25	2.6	24	83	11	83	0	30	0	69	0.88
45066136--45066205	21	3.4	21	72	18	67	37	1	8	52	1.41
45066222--45066267	18	2.6	18	86	3	58	43	0	2	54	1.12
45066234--45066521	59	4.8	59	70	15	234	40	0	3	54	1.23
45066170--45066521	120	3.0	120	96	1	647	41	0	4	53	1.27
45066474--45066508	17	2.0	18	94	5	63	40	0	0	60	0.97
45066436--45066547	54	2.1	55	81	8	131	44	0	3	50	1.25
45073369--45073403	17	2.1	17	89	10	54	74	2	22	0	0.95
45078627--45078687	26	2.3	27	86	10	83	45	11	11	31	1.76
45085936--45085972	9	4.1	9	89	0	56	48	13	8	29	1.71
45086794--45086830	19	1.9	19	88	0	56	35	5	24	35	1.78
45090088--45090157	7	10.0	7	77	0	59	17	1	37	44	1.57
45090308--45090346	15	2.5	16	84	16	55	61	0	2	35	1.10
45090577--45090632	16	3.5	16	80	7	69	66	3	7	23	1.33
45090949--45091008	24	2.5	24	76	10	61	30	43	3	23	1.70
45093250--45093294	22	2.1	21	87	4	63	42	13	4	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45093281--45093976	9	78.2	9	68	23	200	46	13	0	39	1.46
45093263--45093788	31	16.3	31	78	15	495	47	12	0	39	1.43
45093271--45093725	34	13.7	34	74	18	276	47	12	0	40	1.43
45093281--45093411	25	5.1	25	67	26	69	48	13	0	38	1.43
45093486--45093537	14	3.2	18	64	25	51	50	9	0	40	1.35
45093315--45093761	152	3.1	148	86	10	614	48	12	0	39	1.41
45093566--45093981	25	16.2	24	68	20	106	45	14	0	39	1.50
45093470--45093869	164	2.4	170	90	7	638	46	12	0	40	1.42
45093742--45093821	41	2.0	41	82	5	99	42	13	0	43	1.44
45093619--45093865	34	7.4	34	74	16	182	44	13	0	42	1.43
45093852--45093971	16	7.9	16	69	19	96	45	17	1	35	1.58
45096365--45096488	42	3.0	42	80	5	144	25	24	20	30	1.98
45097070--45097129	6	10.2	6	78	10	54	61	0	1	36	1.06
45097081--45097136	26	2.2	26	84	12	71	57	0	1	41	1.09
45097323--45097374	25	2.1	25	81	0	59	55	9	7	26	1.59
45098717--45098771	21	2.6	21	97	2	101	40	18	23	18	1.91
45101884--45101954	21	3.4	21	82	7	90	5	45	16	32	1.71
45106502--45106545	23	1.9	23	86	9	63	56	6	2	34	1.38
45105872--45106735	376	2.3	377	90	4	1328	42	21	5	30	1.75
45107384--45107551	84	2.0	84	91	0	273	36	27	19	16	1.93
45107304--45107719	198	2.1	198	90	1	654	33	26	20	19	1.96
45107705--45108081	84	4.4	84	91	1	583	34	27	19	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45107581--45108081	168	3.0	168	89	4	741	35	27	19	17	1.94
45108655--45108680	3	8.7	3	100	0	52	69	0	0	30	0.89
45114263--45114304	15	2.9	15	82	10	52	47	0	0	52	1.00
45114449--45114547	45	2.2	45	85	5	130	33	28	5	33	1.79
45114608--45114658	20	2.5	21	77	3	59	37	33	7	21	1.82
45114608--45114669	21	3.0	20	73	4	61	38	32	8	20	1.82
45114923--45114977	26	2.1	27	83	10	69	61	1	7	29	1.33
45114928--45114983	26	2.2	25	81	9	60	60	1	8	28	1.37
45133259--45133319	24	2.5	25	82	10	74	4	32	4	57	1.41
45134794--45134857	13	4.9	13	84	0	83	35	23	7	32	1.84
45135926--45135958	7	4.9	7	92	3	50	72	15	0	12	1.12
45146899--45146942	22	2.0	22	95	0	79	25	36	4	34	1.76
45147273--45147297	12	2.1	12	100	0	50	72	0	12	16	1.13
45148065--45148098	15	2.3	15	89	0	50	35	29	32	2	1.73
45149466--45149513	22	2.2	22	85	3	62	58	2	25	14	1.48
45149537--45149578	20	2.1	20	86	0	57	52	2	30	14	1.54
45151864--45151907	22	2.0	22	95	0	79	25	36	4	34	1.76
45154240--45154270	16	1.9	16	93	0	53	41	0	22	35	1.54
45154260--45154352	44	2.1	46	84	8	120	31	4	25	38	1.75
45154445--45154534	26	3.3	26	73	15	67	47	3	2	46	1.31
45154508--45154573	21	3.0	23	75	20	68	53	3	0	43	1.16
45169753--45169783	12	2.6	12	94	0	53	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45177797--45177822	3	8.7	3	100	0	52	0	0	34	65	0.93
45180912--45180970	29	2.0	29	93	0	100	15	28	20	35	1.93
45180912--45180993	29	2.9	29	85	1	85	14	26	21	36	1.93
45181003--45181076	28	2.6	29	89	4	114	13	27	18	40	1.88
45180916--45181099	79	2.3	79	82	2	219	14	27	19	38	1.91
45183572--45183596	3	8.3	3	100	0	50	32	0	0	68	0.90
45186577--45186605	3	9.7	3	100	0	58	34	31	0	34	1.58
45192439--45192903	251	1.9	251	88	2	702	29	17	20	32	1.96
45202511--45202549	9	4.3	9	86	0	60	46	15	0	38	1.46
45202507--45202551	18	2.5	18	92	0	72	48	13	0	37	1.42
45202566--45202598	15	2.3	15	89	5	50	36	3	0	60	1.12
45202721--45203094	9	42.3	9	82	4	422	46	16	0	35	1.53
45209092--45209362	42	6.4	42	84	5	307	24	23	21	30	1.99
45210527--45210566	17	2.4	17	87	8	55	40	0	2	57	1.12
45210842--45210884	17	2.6	16	78	10	50	67	0	30	2	1.03
45210978--45211018	21	1.9	22	85	5	57	34	2	2	60	1.23
45212250--45212308	30	2.0	30	82	0	73	35	10	25	28	1.89
45212761--45212836	23	3.3	23	94	0	134	22	21	25	31	1.98
45212966--45213038	38	1.9	37	86	8	103	45	1	21	31	1.61
45220415--45220626	40	5.3	40	81	5	259	23	21	28	26	1.99
45220419--45220626	80	2.6	80	90	0	319	23	21	29	25	1.99
45233708--45233793	18	4.8	18	73	11	86	46	6	17	29	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45233711--45233823	54	2.0	56	90	8	178	49	7	16	25	1.73
45233873--45233902	14	2.1	14	93	0	51	43	10	13	33	1.77
45237035--45237104	31	2.3	31	87	2	97	18	34	34	12	1.89
45239975--45240009	18	1.9	18	88	0	52	28	34	34	2	1.72
45245114--45245157	16	2.8	16	83	13	63	38	2	0	59	1.10
45245461--45245495	18	1.9	18	94	0	61	28	11	0	60	1.32
45245495--45245524	13	2.4	13	94	5	53	46	0	6	46	1.29
45245520--45245582	26	2.5	26	82	12	78	25	0	9	65	1.23
45245572--45245612	3	13.3	3	94	5	73	31	0	0	68	0.90
45250782--45250843	31	2.1	30	82	17	76	29	14	8	48	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199