genome.fa.s20.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  46  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13662937--13663092	41	3.8	41	96	1	278	26	19	23	30	1.98
13662937--13663134	82	2.4	82	87	3	283	27	19	24	28	1.99
13677814--13677857	24	1.9	23	90	9	72	61	2	0	36	1.09
13678663--13678705	5	8.6	5	94	0	77	60	2	0	37	1.10
13692520--13692585	30	2.2	30	82	10	82	57	6	4	31	1.43
13696268--13696328	29	2.1	29	81	6	70	44	6	4	44	1.51
13698786--13699112	46	7.6	46	81	13	410	34	14	21	29	1.93
13698822--13698976	36	4.0	36	79	15	166	36	14	20	29	1.92
13698786--13699112	82	3.9	82	87	8	478	34	14	21	29	1.93
13702068--13702837	381	2.0	381	99	0	1524	36	11	19	32	1.88
13709282--13709324	16	2.7	16	80	20	54	44	0	34	20	1.52
13719312--13719339	14	2.0	14	100	0	56	14	7	57	21	1.61
13723958--13724038	39	2.0	40	83	6	103	50	4	0	44	1.23
13723960--13724024	20	3.3	19	79	12	69	50	6	0	43	1.27
13724036--13724078	9	4.6	9	80	8	50	72	2	0	25	0.97
13724029--13724093	29	2.4	27	85	10	87	64	1	1	32	1.12
13724044--13724085	19	2.3	19	84	12	52	66	2	2	28	1.16
13725295--13725343	24	2.0	24	100	0	98	26	20	12	40	1.87
13725558--13725585	10	2.8	10	100	0	56	57	0	32	10	1.33
13728945--13728979	5	6.8	5	87	6	52	0	20	0	80	0.72
13728944--13728980	16	2.3	16	95	0	65	0	18	0	81	0.70
13731122--13731269	76	1.9	77	89	4	228	47	9	9	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13743573--13743603	6	5.0	6	96	4	53	64	16	0	19	1.29
13744663--13744704	11	3.9	11	84	6	59	40	0	0	59	0.97
13744641--13744704	21	3.1	22	84	10	91	35	0	3	60	1.12
13744823--13744876	24	2.2	25	78	18	60	44	3	0	51	1.19
13749498--13749685	61	3.1	61	67	17	165	43	2	5	47	1.41
13749433--13749720	120	2.4	120	91	2	479	44	1	4	49	1.34
13749666--13749700	18	2.0	17	88	5	52	45	0	0	54	0.99
13749933--13749969	16	2.3	16	95	0	65	27	27	0	45	1.54
13752318--13752355	20	1.9	20	94	0	67	34	5	13	47	1.65
13752301--13752364	34	1.9	33	87	9	94	39	6	12	42	1.68
13752445--13752519	20	3.8	20	75	10	75	42	4	0	53	1.19
13755203--13755265	6	10.7	6	91	3	101	36	0	63	0	0.95
13757332--13757359	3	9.3	3	100	0	56	67	0	0	32	0.91
13759580--13759978	45	8.6	45	74	10	252	33	17	19	29	1.94
13759607--13759800	96	2.0	96	86	2	273	36	20	18	25	1.94
13759708--13760011	44	6.7	44	72	14	181	32	16	18	31	1.93
13759613--13759982	141	2.6	140	81	3	386	34	17	17	30	1.93
13763206--13763291	26	3.3	27	66	26	76	18	18	11	51	1.76
13769800--13769845	17	2.7	17	86	0	65	41	0	0	58	0.98
13769821--13769941	39	3.1	39	96	2	226	33	2	0	64	1.07
13769821--13769943	38	3.2	38	97	1	228	34	2	0	63	1.08
13769915--13769954	21	1.9	21	89	0	62	37	2	0	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13769914--13769972	22	2.8	21	80	14	59	40	1	3	54	1.27
13776884--13776914	10	3.1	10	100	0	62	61	9	9	19	1.54
13782291--13782332	22	2.0	22	85	4	59	59	7	14	19	1.57
13785411--13785468	30	1.9	30	92	0	98	10	31	39	18	1.85
13787110--13787642	229	2.3	226	78	8	551	30	18	24	26	1.97
13787113--13787648	115	4.7	115	72	11	384	30	18	24	27	1.98
13787708--13787746	21	1.9	20	89	5	60	20	0	35	43	1.52
13791629--13791812	9	20.4	9	79	6	167	49	13	1	35	1.51
13791643--13791812	63	2.7	63	95	0	295	49	13	1	35	1.50
13793380--13793418	12	3.2	12	88	0	60	46	17	33	2	1.62
13793831--13794082	42	6.0	42	86	4	296	26	22	19	31	1.98
13793831--13794101	85	3.2	85	82	6	309	26	22	20	30	1.98
13796429--13796465	6	6.0	6	90	6	56	78	0	18	2	0.87
13797181--13798704	44	34.3	44	76	7	1110	28	24	16	30	1.97
13797180--13798708	89	17.2	88	88	4	1046	28	24	16	30	1.97
13797270--13799000	178	9.8	178	91	2	2724	28	23	16	30	1.97
13797270--13799000	267	6.5	267	91	2	2733	28	23	16	30	1.97
13798625--13798779	75	2.1	75	96	0	283	32	23	18	26	1.97
13798723--13798975	44	5.7	44	80	5	296	28	22	16	32	1.96
13798700--13799000	89	3.4	89	93	1	514	28	22	17	30	1.97
13800260--13800301	13	3.2	13	86	10	50	14	19	0	66	1.25
13800260--13800304	21	2.2	20	88	11	65	15	20	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13801232--13801271	19	2.1	19	86	9	55	70	7	10	12	1.35
13803640--13803674	17	2.1	16	89	5	52	45	20	17	17	1.85
13805360--13805415	25	2.2	26	83	6	78	44	3	10	41	1.56
13806220--13806272	26	2.0	26	96	0	97	24	18	13	43	1.86
13807752--13807789	18	2.2	18	90	4	60	63	10	5	21	1.46
13811202--13811241	20	2.0	20	100	0	80	45	15	10	30	1.78
13811616--13811670	16	2.9	19	75	19	53	52	0	5	41	1.24
13815897--13815927	15	2.1	15	100	0	62	54	0	6	38	1.26
13818156--13818197	21	2.0	21	90	9	68	38	14	9	38	1.78
13818480--13818544	29	2.2	29	83	5	78	33	1	7	56	1.37
13822358--13822396	14	2.8	14	84	0	51	35	12	23	28	1.91
13822970--13823005	18	1.9	18	88	5	54	58	2	0	38	1.13
13823121--13823146	9	2.9	9	100	0	52	42	0	0	57	0.98
13825961--13826016	22	2.6	21	83	8	67	19	21	10	48	1.79
13827475--13827532	27	2.1	27	100	0	116	10	13	36	39	1.79
13827520--13827590	26	2.7	26	84	0	88	22	15	28	33	1.95
13828381--13828406	12	2.2	12	100	0	52	84	0	15	0	0.62
13829072--13829193	42	2.8	44	78	10	121	25	18	27	28	1.98
13829118--13829270	43	3.6	43	81	0	155	28	16	22	32	1.96
13831954--13831997	4	11.0	4	85	0	52	22	0	6	70	1.11
13832212--13832246	16	2.2	16	89	0	52	28	8	0	62	1.24
13836911--13836949	21	1.9	20	84	5	51	17	2	10	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13839292--13839342	17	3.2	16	72	8	50	15	9	0	74	1.06
13841003--13841055	25	2.1	25	82	6	63	43	3	0	52	1.19
13844947--13844972	6	4.3	6	100	0	52	19	61	0	19	1.35
13849794--13849851	11	5.2	11	87	2	80	22	32	1	43	1.64
13849794--13849870	22	3.4	23	84	13	99	24	31	1	42	1.63
13849793--13849867	33	2.2	33	84	9	98	24	32	1	42	1.63
13849793--13849870	11	7.0	11	74	21	74	24	30	1	43	1.62
13851779--13851818	18	2.2	18	95	0	71	22	30	7	40	1.81
13852074--13852122	21	2.3	21	79	6	55	40	36	20	2	1.64
13854108--13854173	24	2.8	24	79	11	73	50	10	6	33	1.62
13855036--13855060	13	1.9	13	100	0	50	80	0	20	0	0.72
13855773--13856021	87	2.9	88	90	1	385	24	26	23	26	2.00
13856053--13856380	44	7.5	44	83	0	413	23	25	21	29	1.99
13856053--13856380	132	2.5	132	86	0	458	23	25	21	29	1.99
13857680--13857767	46	1.9	46	88	0	131	18	15	19	46	1.84
13862254--13862279	13	2.0	13	100	0	52	23	7	7	61	1.49
13862371--13862439	24	2.8	25	78	10	81	49	10	5	34	1.61
13863304--13863328	13	1.9	13	100	0	50	84	0	16	0	0.63
13865947--13866324	125	3.0	125	86	3	571	30	22	17	29	1.97
13874265--13874299	2	17.5	2	100	0	70	51	0	48	0	1.00
13890615--13890639	13	1.9	13	100	0	50	40	0	8	52	1.31
13899047--13899108	27	2.3	27	88	0	88	22	22	32	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13902506--13902569	33	2.0	32	84	9	85	26	17	43	12	1.84
13904451--13904483	7	4.7	7	100	0	66	60	0	0	39	0.97
13904556--13904621	4	17.8	4	81	12	63	0	27	0	72	0.85
13904915--13904985	17	4.0	17	74	15	63	49	0	0	50	1.00
13904930--13904968	20	2.0	21	90	10	64	51	0	0	48	1.00
13905105--13905131	5	5.4	5	100	0	54	40	59	0	0	0.98
13907699--13907734	13	2.7	13	86	4	54	33	2	0	63	1.08
13911852--13911899	23	2.1	23	88	0	69	39	2	4	54	1.32
13916145--13916188	21	2.2	21	88	8	65	45	22	25	6	1.77
13916157--13916197	21	2.0	21	85	0	55	46	24	19	9	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199