genome.fa.s20.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  126  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36318950--36319025	32	2.4	32	84	0	89	25	23	5	46	1.73
36323462--36323537	32	2.4	32	84	0	89	25	23	5	46	1.73
36326764--36327028	40	6.7	40	88	4	333	25	26	21	26	2.00
36326764--36327028	119	2.2	122	84	6	337	25	26	21	26	2.00
36329292--36329327	18	2.0	18	88	0	54	47	8	2	41	1.48
36329804--36329954	27	5.6	27	81	4	169	26	15	28	29	1.96
36329805--36329954	82	1.8	81	88	4	230	26	15	28	30	1.96
36329804--36329954	55	2.8	53	80	4	167	26	15	28	29	1.96
36337779--36338044	40	6.7	40	86	4	308	25	25	22	26	2.00
36337779--36337988	79	2.6	80	88	3	300	25	27	21	26	1.99
36337779--36338043	119	2.2	122	82	6	319	25	26	22	26	2.00
36340547--36340599	20	2.7	20	77	8	63	33	15	32	18	1.92
36347088--36347121	11	3.0	11	86	4	50	70	5	5	17	1.28
36348282--36348354	38	1.9	38	97	0	137	71	1	17	9	1.20
36348270--36348324	26	2.0	28	86	6	78	69	1	18	10	1.27
36348278--36348374	38	2.8	33	79	15	90	71	2	17	9	1.22
36348296--36348391	43	2.2	43	80	5	104	69	2	19	8	1.24
36364289--36364899	47	12.6	49	93	3	944	29	28	8	33	1.86
36371818--36371937	56	2.1	56	98	0	231	45	9	23	22	1.81
36373066--36373285	40	5.7	40	78	11	208	24	21	26	26	2.00
36373168--36373318	40	3.8	40	84	4	157	27	19	25	27	1.99
36373169--36373318	80	1.9	79	82	6	187	27	19	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36378902--36379454	47	11.6	47	91	2	827	32	8	29	29	1.86
36384536--36384655	56	2.1	56	98	0	231	45	9	23	22	1.81
36385783--36386007	40	5.7	40	86	5	287	24	22	27	25	2.00
36385783--36386040	119	2.2	119	81	6	283	25	21	27	25	2.00
36393857--36393899	20	2.2	20	91	8	70	2	25	0	72	0.97
36394512--36394702	104	1.8	104	80	0	229	29	21	28	19	1.98
36403052--36403105	17	2.9	19	71	20	60	46	14	12	25	1.81
36403035--36403105	36	2.0	36	94	0	124	46	14	12	26	1.80
36403034--36403097	17	3.6	17	72	15	58	46	12	12	28	1.78
36407401--36407454	17	2.9	19	76	20	69	46	18	11	24	1.81
36407384--36407454	36	2.0	36	94	0	124	46	16	11	25	1.80
36407383--36407447	17	3.7	17	76	15	69	46	16	10	26	1.80
36419524--36419594	35	2.0	35	97	0	133	45	19	21	14	1.85
36433818--36433842	13	1.9	13	100	0	50	60	0	0	40	0.97
36437654--36437779	37	3.4	37	85	2	164	23	12	25	38	1.90
36442782--36442819	17	2.2	18	86	9	53	65	7	7	18	1.43
36452252--36452595	171	2.0	171	97	0	643	35	18	15	31	1.92
36455280--36455333	24	2.2	24	83	6	65	59	11	9	20	1.59
36458935--36459009	26	2.9	26	91	0	114	18	25	21	34	1.96
36467600--36467706	26	4.1	26	79	0	124	21	21	21	35	1.96
36477557--36478205	47	13.6	47	90	2	1001	33	8	28	29	1.86
36477557--36478205	96	6.8	96	93	1	1090	33	8	28	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36477557--36478205	286	2.3	286	93	0	1100	33	8	28	29	1.86
36479798--36479840	18	2.4	18	77	14	52	46	6	9	37	1.63
36480317--36480494	27	6.6	27	81	3	187	27	15	26	30	1.96
36480314--36480493	82	2.2	81	81	3	209	27	15	26	30	1.96
36487818--36487860	18	2.4	18	77	14	52	46	6	9	37	1.63
36488337--36488514	27	6.6	27	83	3	205	26	15	28	29	1.96
36488338--36488493	82	1.9	81	88	3	233	26	15	28	29	1.96
36488334--36488514	82	2.2	81	83	2	229	27	15	27	29	1.96
36504041--36504080	17	2.5	15	84	11	53	0	12	0	87	0.54
36505998--36506177	94	1.9	94	90	0	288	33	16	17	32	1.93
36514839--36514884	7	6.6	7	84	0	65	15	0	36	47	1.45
36515051--36515201	7	22.0	6	70	17	59	19	1	31	47	1.57
36515051--36515202	14	10.5	14	71	9	90	19	1	32	47	1.58
36515083--36515202	62	1.9	62	86	0	168	19	1	31	47	1.59
36515119--36515185	34	1.9	35	87	3	100	16	1	32	49	1.55
36515083--36515186	48	2.1	49	82	5	122	19	1	31	47	1.60
36515145--36515235	28	3.2	28	78	6	94	18	2	32	46	1.62
36516271--36516315	18	2.5	18	89	7	65	24	37	11	26	1.89
36520690--36520995	161	1.9	161	95	0	549	32	5	31	30	1.81
36522658--36522739	43	1.9	43	82	5	103	26	19	23	30	1.98
36528433--36528459	10	2.7	10	100	0	54	44	11	11	33	1.75
36528947--36528986	20	2.0	21	85	9	57	45	0	32	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36529059--36529126	30	2.2	31	86	5	93	35	1	45	17	1.58
36531250--36531312	26	2.5	25	78	12	67	39	22	3	34	1.70
36531829--36532020	53	3.6	51	82	9	217	22	29	22	26	1.99
36535699--36535731	17	1.9	17	93	0	57	39	18	15	27	1.90
36539409--36539654	50	4.8	50	80	5	233	22	27	21	28	1.99
36539424--36539655	100	2.2	104	82	6	267	21	26	22	29	1.99
36544748--36544815	29	2.3	29	85	5	93	27	30	13	27	1.94
36544637--36544964	174	1.9	174	94	0	575	31	24	14	29	1.94
36544917--36544995	29	2.7	30	82	13	110	30	30	13	25	1.94
36552897--36552964	29	2.3	29	85	5	93	27	30	13	27	1.94
36552786--36553114	175	1.9	174	94	0	577	31	24	14	30	1.94
36553067--36553145	29	2.7	30	82	13	110	30	30	13	25	1.94
36564243--36564489	33	7.4	32	71	8	129	32	16	25	25	1.96
36564246--36564487	133	1.8	133	83	1	324	32	16	25	25	1.96
36570030--36570074	20	2.2	20	88	4	63	24	20	40	15	1.91
36575532--36575726	98	2.0	98	94	0	345	37	24	9	28	1.87
36577180--36577273	19	4.8	19	81	5	116	34	17	10	38	1.84
36577180--36577273	38	2.4	39	89	3	136	34	17	10	38	1.84
36577154--36577273	19	5.9	21	73	22	96	36	16	9	37	1.81
36577476--36578573	217	5.1	217	96	0	1982	26	23	20	29	1.99
36578605--36579044	44	10.1	44	62	17	141	26	24	18	31	1.97
36578566--36579177	132	4.7	132	90	2	937	25	24	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36578566--36579177	259	2.3	260	90	1	958	25	24	18	31	1.98
36580385--36580437	12	4.2	12	81	9	54	3	18	0	77	0.92
36580398--36580434	19	1.9	20	94	5	67	0	21	0	78	0.75
36602991--36603225	50	4.7	50	87	0	308	21	28	21	28	1.99
36610010--36610062	27	2.0	27	84	0	70	69	0	7	22	1.13
36610027--36610083	17	3.3	17	85	2	69	75	3	1	19	1.04
36610552--36610600	21	2.3	21	82	3	53	59	4	12	24	1.50
36612710--36612796	41	2.1	41	89	0	129	27	24	22	25	2.00
36615117--36615230	56	2.0	57	84	3	149	42	9	18	29	1.82
36617999--36618062	32	1.9	34	81	6	78	37	4	10	46	1.60
36618338--36618368	9	3.4	9	90	0	53	25	12	22	38	1.90
36623759--36623806	25	1.9	25	86	0	69	35	8	4	52	1.51
36626916--36626952	14	2.7	14	88	12	51	59	0	2	37	1.12
36626941--36627011	26	3.0	24	77	16	76	60	1	14	23	1.42
36636759--36636822	26	2.5	26	89	0	92	21	28	23	26	1.99
36646398--36646422	10	2.5	10	100	0	50	48	8	0	44	1.32
36646789--36646815	12	2.2	12	100	0	54	48	0	18	33	1.49
36650418--36650463	19	2.4	20	78	10	60	45	2	2	50	1.26
36651469--36651517	23	2.1	23	85	7	64	48	12	0	38	1.41
36652253--36652293	16	2.6	16	80	3	57	34	0	0	65	0.93
36652280--36652327	19	2.6	18	78	21	55	33	0	2	64	1.05
36652253--36652333	16	4.7	18	74	7	55	33	0	1	65	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36653149--36653179	16	2.0	15	93	6	53	54	0	6	38	1.26
36653964--36654034	29	2.4	30	85	2	90	35	9	29	25	1.88
36654027--36654216	30	6.4	29	72	8	107	40	14	24	20	1.90
36653994--36654276	60	4.7	60	69	10	186	38	14	25	22	1.91
36655287--36655316	12	2.5	12	94	0	51	23	40	30	6	1.80
36661709--36661783	29	2.5	28	80	6	87	42	13	26	17	1.86
36661761--36661865	30	3.5	30	78	0	75	37	12	20	29	1.90
36675099--36675191	49	1.9	48	93	2	159	25	24	7	41	1.81
36676953--36677003	25	2.0	27	84	7	70	47	13	0	39	1.43
36680287--36680371	6	13.7	6	68	24	52	76	1	15	7	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199