genome.fa.s20.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  184  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53461674--53461708	16	2.2	16	89	0	52	80	0	5	14	0.89
53462454--53463162	132	5.4	132	90	0	1071	28	24	18	28	1.98
53463148--53463607	44	10.3	43	69	12	247	26	22	18	32	1.97
53463148--53463607	89	5.2	89	86	4	651	26	22	18	32	1.97
53463148--53463607	177	2.6	178	92	1	753	26	22	18	32	1.97
53467748--53467787	20	2.0	20	95	0	71	32	15	22	30	1.94
53471533--53471579	20	2.5	18	83	16	60	68	0	6	25	1.13
53471570--53471600	13	2.3	14	94	5	55	83	6	3	6	0.88
53471730--53471798	3	22.3	3	72	16	52	63	2	0	33	1.09
53471730--53471798	21	3.2	21	78	12	77	63	2	0	33	1.09
53471732--53471798	34	2.0	34	82	5	82	64	2	0	32	1.09
53472360--53472393	5	6.6	5	86	6	50	79	0	5	14	0.91
53472360--53472394	16	2.2	16	89	0	52	80	0	5	14	0.89
53472360--53472409	26	1.9	26	88	8	75	76	0	8	16	1.02
53473114--53473149	12	2.9	12	88	8	54	22	0	5	72	1.05
53473305--53473335	15	2.1	15	93	0	53	41	19	19	19	1.90
53478663--53478698	16	2.2	16	95	0	63	52	5	2	38	1.39
53481888--53481946	31	1.9	31	86	6	84	40	10	13	35	1.78
53482205--53482276	30	2.4	31	79	6	85	40	11	18	30	1.85
53486202--53486243	16	2.5	17	80	3	50	66	2	14	16	1.35
53487548--53487586	16	2.4	16	87	8	53	48	2	25	23	1.63
53487931--53488010	21	3.8	21	85	5	99	17	22	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53501351--53501411	28	2.2	28	85	5	79	42	19	22	14	1.88
53502033--53502093	28	2.2	28	85	11	81	14	21	19	44	1.86
53508195--53508381	92	2.0	92	97	0	356	41	14	16	27	1.87
53516323--53516353	16	1.9	16	93	0	53	22	22	16	38	1.92
53516496--53516578	41	2.0	41	97	0	157	44	19	18	18	1.87
53531531--53531570	21	1.9	21	85	10	55	45	2	5	47	1.38
53532139--53532166	13	2.2	13	100	0	56	28	0	10	60	1.30
53532659--53532704	24	1.9	24	86	0	65	47	0	4	47	1.21
53536895--53536952	19	3.0	20	77	7	57	31	27	15	25	1.96
53538752--53538801	21	2.5	20	90	6	75	54	0	12	34	1.38
53545157--53545222	34	2.0	33	84	3	87	31	3	18	46	1.64
53545309--53545397	18	4.8	18	75	13	72	39	3	1	56	1.23
53554235--53554281	24	2.0	24	87	8	69	38	10	17	34	1.84
53554742--53554821	38	2.1	37	86	9	106	38	1	6	53	1.34
53555233--53555274	15	2.7	16	82	14	52	52	2	0	45	1.13
53555242--53555283	15	2.9	15	82	10	52	52	0	0	47	1.00
53555268--53555455	61	3.1	61	67	18	176	49	6	2	41	1.41
53555231--53555528	120	2.5	121	92	2	503	50	5	2	41	1.38
53555544--53555748	88	2.3	90	88	3	306	46	4	2	45	1.38
53555569--53555708	44	3.2	43	67	16	115	48	3	1	46	1.28
53557455--53557513	31	1.9	31	86	6	84	50	16	27	5	1.66
53558825--53558883	31	1.9	31	89	0	91	37	10	8	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53570073--53570134	29	2.2	29	82	2	72	24	9	14	51	1.72
53570375--53570724	124	2.8	124	95	0	628	30	16	21	32	1.95
53571928--53572040	29	3.9	29	97	2	217	27	0	27	45	1.54
53572086--53572200	36	3.2	36	65	11	92	46	14	4	34	1.65
53572046--53572203	71	2.2	71	95	1	289	46	13	3	36	1.60
53575621--53575645	7	3.6	7	100	0	50	60	12	0	28	1.32
53576725--53576788	30	2.2	29	88	8	94	60	0	0	39	0.97
53576812--53576900	29	3.3	29	62	20	75	40	0	29	30	1.57
53576789--53576910	51	2.4	51	90	4	183	40	0	29	29	1.57
53576883--53576908	12	2.2	12	100	0	52	38	0	30	30	1.58
53578195--53578257	30	2.1	30	85	11	85	39	7	9	42	1.67
53579058--53579089	12	2.6	13	85	14	50	37	0	6	56	1.25
53588931--53589054	50	2.5	50	85	0	167	29	24	26	19	1.98
53602764--53602831	33	2.1	33	83	5	84	47	4	1	47	1.31
53602916--53602968	19	2.8	19	75	13	56	49	0	3	47	1.19
53605527--53605594	35	1.9	35	81	0	82	25	22	19	33	1.97
53611184--53611211	14	2.0	14	100	0	56	42	0	14	42	1.45
53614218--53614246	6	4.8	6	100	0	58	17	68	13	0	1.20
53614216--53614263	15	3.4	15	81	18	59	22	66	10	0	1.22
53614216--53614272	27	2.1	27	83	6	71	21	64	12	1	1.35
53622262--53622312	20	2.6	20	87	3	68	66	0	3	29	1.09
53622339--53622374	11	3.1	12	88	8	56	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53622557--53622641	10	8.4	10	67	21	52	29	3	1	65	1.16
53622557--53622622	21	3.3	19	83	12	71	25	3	1	69	1.11
53622557--53622642	20	4.3	20	79	10	70	30	3	1	65	1.17
53622577--53622642	29	2.2	30	84	7	82	33	3	0	63	1.10
53624522--53624690	92	1.8	93	87	3	252	36	14	9	39	1.79
53633014--53633068	27	2.1	27	82	3	67	52	5	7	34	1.52
53633063--53633088	13	2.0	13	100	0	52	61	0	0	38	0.96
53633067--53633111	22	2.0	22	82	0	54	62	4	0	33	1.15
53662014--53662069	28	1.9	30	89	7	89	39	3	7	50	1.47
53663174--53663264	47	2.0	46	82	2	110	53	3	12	30	1.53
53664847--53664880	3	11.3	3	100	0	68	67	0	0	32	0.91
53666671--53666734	17	3.6	17	74	15	67	28	12	12	46	1.78
53666663--53666731	36	1.9	36	96	0	129	27	13	13	46	1.79
53666663--53666714	19	2.9	18	72	16	54	26	13	13	46	1.80
53671789--53671852	17	3.6	17	74	15	67	28	12	14	45	1.81
53673740--53674073	131	2.5	131	87	0	472	28	23	17	30	1.97
53673745--53673932	44	4.3	45	68	8	109	27	25	18	29	1.98
53682873--53682938	28	2.3	28	86	5	96	43	0	3	53	1.16
53683718--53683794	14	5.0	15	70	20	52	44	12	7	35	1.72
53683722--53683788	34	1.9	35	96	3	127	47	11	7	32	1.68
53683757--53683796	14	2.9	14	82	14	55	45	12	5	37	1.64
53684592--53684666	21	3.6	21	78	5	89	17	14	25	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53687388--53687478	44	2.0	45	83	10	116	29	2	4	63	1.25
53688176--53688208	17	2.0	17	88	5	50	33	0	9	57	1.30
53689487--53689518	3	10.7	3	100	0	64	68	0	0	31	0.90
53689821--53689883	31	2.0	32	96	3	119	42	15	9	31	1.79
53700234--53700349	58	2.0	59	89	1	180	45	12	16	25	1.82
53700250--53700371	58	2.1	55	78	12	138	49	9	17	23	1.76
53705808--53705848	20	2.1	19	86	13	57	39	0	4	56	1.21
53705808--53705848	19	2.1	20	86	13	59	39	0	4	56	1.21
53713624--53713672	18	2.7	19	84	12	68	65	0	0	34	0.93
53713630--53713665	9	4.1	9	85	7	56	63	0	0	36	0.94
53713635--53713677	16	2.7	15	82	13	50	65	0	0	34	0.93
53721936--53721980	23	1.9	23	82	13	56	15	8	40	35	1.79
53722012--53722277	125	2.1	125	82	5	324	30	14	22	32	1.94
53722187--53722390	85	2.4	85	95	0	365	24	20	24	31	1.98
53725562--53726003	23	16.8	28	72	20	300	28	0	23	47	1.52
53725531--53726003	51	9.2	51	78	12	377	28	0	23	47	1.52
53725672--53725742	34	2.1	33	86	2	97	26	0	29	43	1.55
53725808--53725878	34	2.1	34	91	0	115	26	0	26	46	1.53
53725733--53725952	108	2.0	106	84	6	282	27	0	24	47	1.52
53727106--53727152	20	2.3	20	86	13	62	59	4	2	34	1.29
53728878--53729207	44	7.5	44	72	7	181	27	22	19	30	1.98
53728866--53729027	87	1.9	87	82	2	209	25	23	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53728917--53729158	131	1.8	133	80	5	294	26	23	20	29	1.99
53742387--53742433	20	2.3	20	86	13	62	59	4	2	34	1.29
53743879--53744417	28	18.9	28	72	17	369	29	0	23	46	1.54
53743888--53744038	23	6.9	23	70	13	120	29	0	23	47	1.52
53743879--53744429	85	6.8	82	80	15	526	29	0	23	47	1.54
53743934--53744116	39	4.5	39	78	16	210	29	0	25	45	1.54
53743934--53744167	124	1.9	127	92	4	402	29	0	23	46	1.53
53744097--53744456	28	13.6	23	70	21	119	31	0	22	46	1.56
53744125--53744190	23	2.9	21	100	0	78	31	0	21	46	1.51
53744361--53744449	23	3.8	23	78	8	108	29	0	24	46	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199