genome.fa.s20.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  176  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51300145--51300341	86	2.3	86	81	5	229	32	24	13	28	1.93
51308716--51308779	26	2.5	26	86	0	83	39	14	12	34	1.83
51334708--51334738	15	2.1	15	93	0	53	25	32	6	35	1.82
51341551--51341581	4	7.8	4	92	0	53	74	0	3	22	0.96
51345964--51346139	91	1.9	91	91	0	289	30	28	15	25	1.96
51352251--51352296	23	2.0	24	91	4	76	23	0	2	73	0.94
51364927--51365334	47	8.6	47	92	1	627	29	29	8	32	1.87
51364927--51365334	96	4.3	96	91	3	648	29	29	8	32	1.87
51368841--51369148	40	7.7	40	92	0	447	25	28	21	24	1.99
51369202--51369276	38	2.0	38	86	5	107	24	26	18	30	1.98
51371410--51371911	47	10.6	47	92	1	797	29	29	8	32	1.87
51371410--51371911	96	5.3	96	91	3	804	29	29	8	32	1.87
51371410--51371911	143	3.5	142	92	1	808	29	29	8	32	1.87
51382526--51382639	23	5.1	23	76	8	128	22	26	6	44	1.76
51382516--51382639	42	2.8	43	81	4	142	22	25	7	45	1.78
51385253--51385301	23	2.1	23	92	0	80	20	30	4	44	1.70
51388132--51388166	17	2.1	17	88	0	52	17	2	11	68	1.31
51388212--51388248	18	2.0	19	94	5	67	37	0	0	62	0.96
51389483--51389556	32	2.5	30	82	10	91	51	17	2	28	1.59
51389518--51389570	27	2.0	27	85	7	72	52	16	3	26	1.61
51393224--51393258	17	2.1	16	89	5	52	65	0	0	34	0.93
51393582--51393611	6	4.8	6	95	4	51	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51396924--51397022	10	10.6	10	68	22	63	58	2	1	38	1.16
51396942--51397030	18	4.7	18	75	15	74	59	2	1	37	1.17
51397005--51397039	17	2.0	18	88	5	54	68	2	0	28	1.04
51398355--51398405	19	2.7	20	76	17	54	41	9	3	45	1.56
51399432--51399949	290	1.8	282	83	5	680	34	23	10	31	1.89
51400963--51401070	15	7.2	15	67	12	78	44	7	22	25	1.79
51400957--51401080	30	4.1	30	93	1	203	43	6	24	25	1.78
51405649--51405771	30	4.1	30	91	3	194	43	6	23	26	1.77
51405649--51405771	59	2.0	61	90	3	196	43	6	23	26	1.77
51407643--51407714	37	1.9	37	97	0	135	20	11	16	51	1.75
51409442--51409476	12	2.9	12	95	0	61	20	17	11	51	1.75
51409445--51409476	6	5.3	6	92	0	55	18	15	12	53	1.73
51410036--51410076	19	2.2	19	100	0	82	48	21	9	19	1.77
51417494--51417522	10	2.7	11	94	5	51	31	24	10	34	1.89
51419157--51419191	18	1.9	17	88	11	52	62	2	5	28	1.32
51419180--51419208	12	2.5	12	94	5	51	75	3	6	13	1.13
51419189--51419223	15	2.3	15	95	0	61	77	2	5	14	1.07
51420087--51420126	18	2.4	16	87	8	53	62	0	25	12	1.30
51424012--51424050	20	2.0	20	85	10	53	25	2	12	58	1.47
51433693--51433733	19	2.2	19	86	0	55	65	9	0	24	1.22
51434131--51434311	91	2.0	91	94	0	317	32	25	16	25	1.96
51440459--51440612	23	6.6	22	73	10	94	38	16	14	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51440400--51440610	47	4.5	46	75	6	197	40	16	13	29	1.86
51440400--51440614	93	2.3	96	90	3	346	40	15	13	30	1.86
51441334--51441456	28	4.5	28	81	8	146	30	26	11	31	1.91
51444070--51444260	50	3.7	51	80	6	206	24	28	21	25	1.99
51446668--51446716	23	2.1	24	85	11	66	12	12	10	65	1.48
51446972--51446997	5	5.2	5	100	0	52	19	0	0	80	0.71
51446977--51447029	23	2.3	23	80	3	63	20	0	5	73	1.03
51446972--51447029	28	2.0	29	86	3	82	20	0	5	74	1.01
51452521--51452561	14	3.4	12	83	16	50	14	0	4	80	0.87
51452527--51452567	12	3.1	14	80	19	52	12	0	7	80	0.90
51455911--51455946	19	1.9	18	88	5	54	41	19	8	30	1.81
51457024--51457120	49	2.0	49	83	4	124	23	29	21	24	1.99
51459734--51459767	17	1.9	18	94	5	61	32	11	0	55	1.36
51460796--51460830	5	6.8	5	93	6	61	17	0	0	82	0.66
51463031--51463074	17	2.4	19	85	7	56	47	9	2	40	1.48
51474028--51474370	50	6.8	50	89	1	508	26	22	29	21	1.99
51477370--51477463	33	2.9	34	78	9	97	22	19	15	42	1.89
51485101--51485129	14	2.1	14	100	0	58	24	20	27	27	1.99
51494800--51494851	24	2.2	24	85	0	68	38	1	7	51	1.42
51496406--51496469	31	2.0	31	82	11	76	25	12	17	45	1.83
51499143--51499173	16	1.9	16	93	0	53	41	0	35	22	1.54
51499527--51499563	18	2.1	18	89	0	56	32	5	13	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51500045--51500087	18	2.3	19	84	4	52	27	4	2	65	1.25
51513527--51513737	43	5.0	41	86	4	287	32	20	21	25	1.98
51513527--51513737	42	5.0	42	87	1	296	32	20	21	25	1.98
51513735--51513767	16	2.1	16	94	0	57	24	30	12	33	1.91
51514061--51514106	19	2.4	19	100	0	92	19	8	21	50	1.75
51519709--51519975	9	30.8	9	72	14	213	32	1	20	45	1.62
51519698--51520004	25	12.1	25	73	17	179	31	2	20	45	1.65
51519852--51520005	79	1.9	77	82	12	188	29	2	20	46	1.64
51520082--51520131	16	3.4	16	73	21	63	34	2	18	46	1.60
51520080--51520148	28	2.4	28	90	2	111	34	2	15	46	1.61
51520334--51520498	13	12.5	13	73	10	129	46	3	10	40	1.56
51520360--51520447	27	3.3	26	72	15	81	47	4	10	37	1.58
51520329--51520474	53	2.8	53	95	0	256	44	3	10	41	1.56
51520387--51520525	66	2.1	66	83	0	170	45	2	10	41	1.52
51520655--51520697	18	2.3	18	84	8	50	55	2	2	39	1.25
51521461--51521492	15	2.1	15	94	0	55	53	15	3	28	1.57
51522938--51523242	147	2.1	145	81	6	339	37	23	13	24	1.92
51523962--51524001	13	2.9	14	85	11	55	47	45	0	7	1.31
51523969--51524014	14	3.4	13	85	8	56	47	45	0	6	1.28
51524451--51524491	20	2.0	20	86	9	57	39	43	0	17	1.49
51524624--51524656	14	2.3	15	94	5	59	36	33	0	30	1.58
51524988--51525617	114	5.5	115	80	5	582	28	24	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51525061--51525643	227	2.6	226	79	4	636	27	24	21	25	1.99
51529868--51529923	5	11.2	5	84	7	78	41	17	0	41	1.50
51531506--51531533	11	2.5	11	100	0	56	28	17	10	42	1.83
51534675--51534722	17	2.9	16	81	9	60	62	0	0	37	0.95
51541084--51541701	44	13.7	45	73	11	214	31	17	21	29	1.96
51541075--51541683	89	6.8	89	70	14	307	31	18	20	29	1.96
51541222--51541508	41	6.6	42	73	14	206	31	18	19	30	1.96
51541075--51541474	181	2.2	181	90	1	642	30	16	22	30	1.96
51541765--51541887	45	2.8	44	82	2	147	39	18	12	30	1.87
51542356--51542395	22	1.9	20	90	10	62	20	50	12	17	1.78
51543379--51543490	60	1.9	60	81	9	140	33	8	2	54	1.46
51543590--51543631	18	2.4	17	88	8	57	21	2	4	71	1.16
51543519--51543709	90	2.1	92	96	1	350	19	14	4	60	1.51
51545099--51545400	123	2.5	119	87	6	437	45	3	12	38	1.59
51545281--51545809	157	3.4	155	87	4	681	44	3	10	41	1.56
51561943--51561996	16	3.3	16	80	14	65	50	12	9	27	1.71
51561944--51562279	17	18.8	17	66	20	102	43	10	11	33	1.76
51561966--51562285	36	8.9	36	78	9	255	42	10	11	35	1.76
51561990--51562285	18	16.5	17	67	15	107	41	9	12	36	1.76
51562980--51563081	6	16.3	6	78	17	84	0	21	0	78	0.75
51562979--51563060	7	12.4	7	77	12	77	0	19	0	80	0.71
51562979--51563085	25	4.1	26	82	11	130	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51562972--51563066	15	6.3	15	77	18	81	1	17	0	81	0.76
51562980--51563085	41	2.5	42	80	13	126	0	21	0	78	0.75
51562986--51563085	15	7.1	15	75	20	85	0	22	0	78	0.76
51563182--51563229	14	3.5	14	83	10	64	0	16	4	79	0.89
51563198--51563251	20	2.6	22	80	13	71	0	11	11	77	0.99
51563184--51563249	27	2.4	27	78	12	73	0	12	7	80	0.91
51563749--51563877	29	4.5	28	77	10	109	38	5	22	33	1.77
51564203--51564252	25	2.0	25	100	0	100	44	0	16	40	1.47
51564232--51564861	75	8.3	75	88	3	892	34	20	16	27	1.94
51564228--51564864	303	2.1	302	90	3	987	34	20	16	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199