genome.fa.s20.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  157  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46203131--46203251	19	6.2	18	68	20	57	31	3	0	64	1.15
46203657--46203722	13	5.5	13	73	12	52	36	6	3	54	1.41
46205217--46205299	34	2.4	34	78	7	89	46	13	9	30	1.75
46205249--46205328	34	2.3	34	85	6	99	45	12	10	32	1.75
46209352--46209414	28	2.2	28	97	0	117	33	11	6	49	1.64
46209614--46209640	3	9.0	3	100	0	54	33	0	0	66	0.92
46210186--46210211	13	2.0	13	100	0	52	46	0	0	53	1.00
46214012--46214069	23	2.8	20	80	17	57	56	3	0	39	1.16
46215683--46215733	21	2.5	21	90	3	86	56	13	11	17	1.66
46219530--46219593	23	2.8	22	74	6	65	42	0	0	57	0.98
46219789--46219822	11	2.9	11	91	8	50	50	0	2	47	1.16
46220544--46220587	23	1.9	24	86	9	65	68	2	0	29	1.02
46220836--46220947	59	1.9	59	83	9	147	21	15	13	50	1.78
46221335--46221447	29	3.9	29	71	5	86	52	15	14	18	1.75
46221334--46221478	58	2.5	58	78	5	159	51	15	14	19	1.77
46221431--46221500	31	2.3	31	97	0	131	48	12	14	24	1.78
46227242--46227305	10	6.4	10	77	0	56	40	18	6	34	1.76
46230856--46230912	28	2.0	28	96	0	105	40	17	10	31	1.84
46232503--46232552	21	2.4	21	93	0	82	8	22	0	70	1.13
46234231--46234267	17	2.1	18	90	5	58	21	29	35	13	1.92
46240286--46240392	32	3.1	32	82	12	97	63	0	1	33	1.11
46240359--46240422	10	6.5	10	74	13	53	71	0	1	26	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46240353--46240423	9	7.6	9	72	18	56	70	0	1	28	0.96
46240315--46240458	38	3.5	39	78	20	152	65	0	2	32	1.05
46240340--46240432	47	2.0	47	91	6	152	65	0	1	33	1.00
46242449--46242486	19	1.9	20	84	10	51	28	15	2	52	1.56
46246167--46246219	21	2.6	19	77	13	61	41	15	13	30	1.85
46246641--46246735	27	3.5	27	82	0	109	46	10	21	22	1.81
46249814--46249887	27	2.7	27	82	0	94	29	16	25	28	1.97
46250018--46250133	27	4.3	27	78	0	106	39	8	25	25	1.84
46251265--46251330	32	2.0	34	88	11	102	12	33	25	28	1.92
46254818--46254859	17	2.4	18	88	4	59	85	2	4	7	0.80
46254810--46254859	18	2.8	17	82	11	64	86	4	4	6	0.80
46255301--46255333	7	4.7	7	96	0	57	78	0	12	9	0.95
46255661--46255954	98	2.9	100	78	14	343	26	15	9	47	1.77
46255671--46255822	49	3.1	49	66	19	127	28	14	7	49	1.71
46256825--46256963	46	3.0	46	87	2	208	28	15	24	32	1.95
46256948--46256979	16	2.0	16	93	0	55	34	18	34	12	1.89
46256902--46257025	62	2.0	62	90	3	196	31	16	25	25	1.97
46256964--46257750	46	17.1	46	91	0	1259	26	15	26	31	1.95
46261675--46261868	51	3.8	51	82	2	264	24	16	28	30	1.97
46261673--46261860	102	1.8	102	96	0	349	25	16	28	30	1.97
46261782--46261862	26	3.2	26	61	22	62	24	14	28	32	1.95
46265276--46265313	12	3.2	12	96	3	69	13	7	31	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46265366--46265443	39	2.0	40	85	7	106	34	20	20	24	1.96
46265652--46265714	25	2.6	25	89	2	92	15	39	20	23	1.91
46269459--46269512	22	2.5	21	78	6	63	74	1	1	22	1.02
46270254--46270609	114	3.1	114	88	1	527	34	17	21	26	1.96
46276729--46276772	21	2.1	21	100	0	88	38	9	13	38	1.77
46276728--46276783	21	2.8	19	87	10	85	37	8	16	37	1.80
46276762--46276806	23	2.0	23	86	4	65	40	2	17	40	1.62
46276772--46276816	23	2.0	23	82	4	56	35	2	15	46	1.58
46276980--46277018	19	2.0	21	85	10	55	15	10	5	69	1.34
46283677--46283709	16	2.0	16	94	5	57	81	0	0	18	0.68
46283840--46284328	88	5.6	88	86	0	620	28	27	23	20	1.99
46284328--46284703	44	8.7	44	83	6	455	27	18	25	28	1.98
46284328--46284657	170	1.9	170	88	3	495	27	17	25	29	1.97
46284329--46284710	126	2.9	129	87	5	520	28	17	25	28	1.98
46285543--46285626	19	4.4	18	82	8	80	38	8	17	35	1.80
46285545--46285619	19	3.8	19	91	6	123	37	9	16	37	1.80
46285546--46285608	21	3.1	21	95	4	112	38	9	14	38	1.78
46285598--46285642	23	2.0	22	86	4	63	40	2	17	40	1.62
46285608--46285652	23	2.0	23	82	4	56	35	2	15	46	1.58
46286076--46286115	3	13.3	3	84	10	55	32	0	0	67	0.91
46286060--46286114	15	3.7	15	74	16	53	30	0	1	67	1.01
46286062--46286113	12	4.1	12	80	14	52	28	0	1	69	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46286373--46286487	51	2.3	49	83	8	135	32	5	6	56	1.46
46289260--46289297	9	4.3	9	90	6	60	31	23	10	34	1.89
46289260--46289297	17	2.2	18	90	4	60	31	23	10	34	1.89
46295340--46295368	15	1.9	15	100	0	58	37	0	6	55	1.27
46299043--46299090	17	2.8	17	93	0	78	41	6	2	50	1.39
46303563--46303605	20	2.2	20	83	4	61	34	2	2	60	1.22
46303600--46303715	60	1.9	60	86	6	164	40	6	15	37	1.72
46304173--46304230	20	2.9	19	77	10	62	37	1	0	60	1.07
46314690--46315094	107	3.8	107	91	1	595	31	19	19	30	1.96
46315850--46315880	15	2.1	15	93	0	53	58	0	9	32	1.31
46317608--46318848	219	5.7	219	91	1	1864	29	26	15	27	1.96
46317565--46318848	44	29.3	44	75	7	1011	29	26	15	27	1.96
46327408--46327973	282	2.0	282	97	0	1080	21	25	15	37	1.93
46330555--46330961	107	3.8	107	92	0	647	31	18	19	30	1.96
46331720--46331750	15	2.1	15	93	0	53	58	0	9	32	1.31
46333611--46333644	13	2.6	13	95	0	59	26	8	14	50	1.72
46334694--46334725	16	2.0	16	100	0	64	31	18	12	37	1.88
46335239--46335277	17	2.3	17	86	0	51	15	2	7	74	1.15
46337305--46337412	57	1.9	55	88	3	162	41	10	9	38	1.71
46339584--46339692	56	2.0	55	92	5	184	40	12	8	38	1.74
46340072--46340112	19	2.2	19	100	0	82	29	0	9	60	1.28
46340977--46341016	20	2.0	20	85	9	55	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46341313--46341493	100	1.8	100	80	4	222	33	13	17	35	1.89
46346756--46347029	135	2.0	135	100	0	548	28	17	15	39	1.90
46369760--46369915	45	3.5	45	87	1	215	43	14	20	21	1.87
46379701--46379767	27	2.3	30	85	7	95	17	4	7	70	1.28
46384728--46384757	12	2.5	12	94	0	51	46	26	13	13	1.80
46388962--46389049	43	2.0	43	97	0	167	44	18	11	26	1.83
46393090--46393140	15	3.3	15	78	5	57	78	3	13	3	1.03
46397230--46397257	7	4.0	7	100	0	56	28	28	0	42	1.56
46401102--46401141	20	2.0	20	85	0	53	27	0	25	47	1.52
46408058--46408161	3	34.7	3	92	0	172	0	35	0	64	0.94
46411739--46411799	4	15.2	4	77	16	56	19	1	3	75	1.03
46411725--46411785	18	3.4	18	76	15	54	19	3	3	73	1.11
46411723--46411797	8	9.1	8	74	10	53	20	2	2	74	1.06
46411722--46411819	44	2.2	47	80	15	118	21	4	4	70	1.21
46414431--46414473	9	4.4	9	78	16	50	51	2	0	46	1.13
46414423--46414468	21	2.1	22	92	4	76	47	2	2	47	1.26
46417566--46417616	15	3.6	14	76	21	52	11	3	1	82	0.89
46419216--46419259	22	2.0	23	86	13	65	34	0	0	65	0.93
46419211--46419263	23	2.3	22	81	15	63	32	0	0	67	0.91
46423229--46423275	23	2.0	23	100	0	94	38	0	17	44	1.48
46426017--46426057	16	2.6	16	78	21	50	31	4	0	63	1.15
46426371--46426410	20	2.0	20	85	9	55	62	2	0	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46435769--46435857	28	3.2	28	87	7	128	32	22	22	22	1.98
46436221--46436335	27	4.3	27	91	1	160	20	16	23	40	1.91
46439980--46440363	194	2.0	194	89	1	590	32	14	18	34	1.91
46442392--46442698	39	7.8	40	87	7	386	26	21	27	24	1.99
46451995--46452033	15	2.7	14	76	7	51	46	5	0	48	1.24
46452952--46453006	28	2.0	26	82	6	65	60	7	9	23	1.52
46453482--46453512	16	1.9	16	93	0	53	48	3	0	48	1.17
46456487--46456538	26	2.0	27	96	3	97	26	1	0	71	0.97
46456489--46456545	26	2.2	26	87	6	80	28	1	0	70	0.98
46456488--46456545	27	2.2	26	90	3	89	27	1	0	70	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199