genome.fa.s20.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  132  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38408035--38408074	10	3.8	10	84	12	53	35	0	2	62	1.09
38408933--38408979	17	2.8	17	83	3	60	31	2	10	55	1.46
38411144--38411319	47	3.7	47	95	1	300	33	7	29	28	1.86
38411191--38411269	25	3.3	25	61	10	65	32	5	29	32	1.79
38412694--38412965	40	6.8	40	92	0	418	23	20	28	26	1.99
38415857--38416173	47	6.7	47	96	0	564	33	8	29	29	1.86
38419721--38419777	29	2.0	30	93	6	100	31	7	10	50	1.63
38431334--38431400	17	3.8	17	74	18	57	64	2	1	31	1.18
38431458--38431515	22	2.8	20	80	16	66	65	0	5	29	1.14
38434210--38434269	22	2.7	23	73	19	63	66	6	0	26	1.16
38434219--38434252	4	8.0	4	90	9	50	73	2	0	23	0.97
38435605--38435656	23	2.3	22	75	21	54	9	23	1	65	1.32
38435650--38435688	18	2.2	18	85	0	51	12	23	2	61	1.43
38438018--38438077	22	2.7	23	73	19	63	66	6	0	26	1.16
38438027--38438060	4	8.0	4	90	9	50	73	2	0	23	0.97
38440149--38440200	19	2.7	20	73	11	54	40	17	7	34	1.78
38440618--38440681	19	3.3	19	77	20	62	48	0	0	51	1.00
38441958--38441990	11	2.8	12	86	9	50	60	0	0	39	0.97
38464521--38464556	15	2.5	15	95	4	65	19	0	0	80	0.71
38469632--38469880	50	4.8	50	85	4	284	20	29	24	26	1.99
38469631--38469880	100	2.4	104	88	6	357	20	29	24	26	1.99
38469975--38470006	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38470039--38470170	66	2.0	66	100	0	264	33	22	9	34	1.86
38470284--38470341	30	1.9	30	89	0	89	31	24	3	41	1.71
38470820--38470848	12	2.3	13	94	5	51	0	24	0	75	0.80
38470886--38470927	15	2.7	15	88	3	57	4	19	2	73	1.12
38470936--38471015	27	3.1	25	77	15	83	56	3	0	40	1.17
38470939--38470982	22	2.0	22	91	8	72	59	0	0	40	0.98
38470937--38470985	5	9.2	5	81	18	55	59	0	0	40	0.98
38472895--38472922	13	2.2	13	100	0	56	46	25	7	21	1.76
38475363--38475610	50	4.8	50	85	5	293	20	29	23	26	1.99
38475362--38475610	105	2.4	103	87	7	346	20	29	23	26	1.99
38475705--38475736	13	2.5	13	94	0	55	56	12	0	31	1.37
38475948--38476004	30	1.9	30	89	3	89	31	24	3	40	1.72
38476529--38476586	25	2.3	25	77	16	66	3	24	5	67	1.27
38476549--38476594	14	3.1	14	84	6	56	4	17	4	73	1.15
38476598--38476666	5	14.4	5	75	18	67	55	4	0	40	1.20
38476599--38476640	18	2.3	19	95	4	77	57	0	0	42	0.99
38476598--38476666	28	2.4	28	86	11	88	55	4	0	40	1.20
38494309--38494402	47	2.0	47	97	0	179	28	10	26	34	1.90
38496349--38496413	34	1.9	33	90	3	103	24	32	7	35	1.84
38497723--38497774	27	2.0	26	81	11	61	67	3	15	13	1.37
38503199--38503584	50	7.8	50	79	5	381	27	21	29	22	1.99
38503201--38503584	98	3.9	97	78	3	419	27	21	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38503205--38503625	197	2.1	197	92	0	700	28	21	27	22	1.99
38503255--38503531	147	1.9	146	81	4	342	27	22	27	22	1.99
38506079--38506136	28	2.1	28	96	0	107	22	8	15	53	1.69
38507188--38507226	11	3.6	11	86	3	53	64	0	2	33	1.08
38509200--38509249	3	16.7	3	100	0	100	0	34	0	66	0.92
38510917--38510958	22	2.1	19	86	13	57	52	0	2	45	1.13
38522973--38523002	9	3.4	9	95	4	53	93	6	0	0	0.35
38526687--38526763	27	2.7	29	78	11	97	32	15	14	37	1.88
38530812--38530863	3	17.3	3	80	7	61	34	0	3	61	1.14
38531663--38531761	36	2.6	38	74	15	96	40	1	25	33	1.62
38537457--38537516	29	2.0	32	87	9	90	41	16	13	28	1.86
38537917--38538093	27	6.6	27	83	2	221	21	16	19	41	1.90
38537917--38538095	81	2.2	82	85	4	247	21	16	20	41	1.90
38538094--38538181	28	2.8	33	67	19	89	38	17	9	35	1.81
38538683--38539077	29	13.8	29	79	6	340	36	24	15	23	1.94
38539692--38539877	29	6.6	29	73	9	134	37	24	12	25	1.90
38539708--38539859	82	1.9	82	85	2	216	34	25	13	26	1.93
38539638--38540115	252	1.9	252	86	0	679	34	22	15	27	1.94
38540046--38540288	29	8.4	29	74	5	170	39	22	14	23	1.91
38540933--38541268	29	11.8	29	75	8	222	37	20	16	25	1.93
38541892--38541970	29	2.7	29	86	3	97	36	21	15	26	1.93
38543272--38543335	28	2.3	27	78	7	74	29	21	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38543565--38543813	32	7.8	32	73	7	152	36	22	21	19	1.95
38543565--38543684	64	1.9	64	91	0	186	36	21	20	20	1.95
38543700--38543784	31	2.7	32	78	7	84	34	23	23	18	1.97
38543983--38544049	24	2.9	23	86	4	98	44	25	10	19	1.82
38544107--38544306	27	7.4	26	76	9	124	23	19	18	39	1.92
38544108--38544322	81	2.7	81	83	8	253	23	18	18	40	1.92
38544157--38544327	27	6.3	27	85	4	186	22	18	17	41	1.90
38544126--38544323	54	3.7	54	82	4	213	22	17	19	40	1.91
38544283--38544335	27	2.0	27	81	7	63	24	15	20	39	1.91
38548334--38548664	66	5.4	63	67	22	247	42	3	6	48	1.43
38548303--38548708	120	3.4	120	96	2	728	43	2	5	48	1.39
38548417--38548451	18	2.0	17	88	5	52	45	0	0	54	0.99
38548537--38548571	18	2.0	17	88	5	52	45	0	0	54	0.99
38548657--38548691	18	2.0	17	88	5	52	45	0	0	54	0.99
38549046--38549098	16	3.2	16	89	5	88	37	35	0	26	1.57
38551744--38551807	19	3.4	19	72	18	62	40	12	9	37	1.75
38551755--38551810	19	2.9	19	84	12	78	35	16	10	37	1.83
38551857--38552104	20	12.7	20	72	9	165	40	15	10	33	1.81
38552012--38552098	19	4.5	19	69	13	61	42	17	9	31	1.80
38552153--38552220	20	3.4	20	81	0	64	39	14	8	36	1.78
38552173--38552229	20	2.8	20	81	0	69	42	10	7	40	1.66
38552320--38552402	20	4.2	20	74	11	80	33	22	9	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38552471--38552511	20	2.0	20	85	0	55	34	9	9	46	1.70
38552515--38552554	20	2.0	20	90	0	62	40	15	12	32	1.84
38562647--38562943	50	5.8	50	73	9	217	27	20	26	24	1.99
38569332--38569472	56	2.7	53	82	6	153	26	19	29	24	1.99
38572571--38572712	40	3.6	39	90	1	194	33	23	14	28	1.94
38574066--38574097	15	2.1	15	94	0	55	68	9	6	15	1.36
38586929--38586974	23	2.0	23	95	4	85	43	15	15	26	1.85
38590390--38590432	17	2.5	17	78	14	52	53	11	2	32	1.50
38594597--38594828	120	1.9	120	97	0	437	34	27	10	26	1.90
38595245--38595289	20	2.2	20	84	0	63	17	20	22	40	1.92
38598132--38598209	27	2.9	27	78	14	97	16	19	20	43	1.88
38598133--38598235	54	1.9	54	80	11	122	19	21	17	41	1.90
38600325--38600394	31	2.3	30	85	11	97	38	1	2	57	1.23
38600342--38600401	12	5.5	11	75	13	54	40	1	1	56	1.19
38603217--38603318	43	2.4	43	81	0	132	22	33	27	16	1.96
38611333--38611361	14	2.0	15	93	6	51	27	0	20	51	1.47
38611556--38611609	14	3.8	14	76	11	56	57	0	3	38	1.17
38611553--38611609	28	2.0	28	93	6	98	57	0	3	38	1.16
38613310--38613388	41	1.9	41	87	5	115	27	18	24	29	1.98
38613338--38613483	41	3.6	41	81	9	147	26	19	30	23	1.98
38615705--38615891	44	4.3	44	64	11	114	24	22	23	29	1.99
38615984--38616263	44	6.4	44	70	8	169	27	19	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38634048--38634136	44	2.0	44	97	0	169	41	16	8	32	1.80
38636628--38636698	35	2.0	35	84	10	92	29	23	8	38	1.85
38650067--38650125	30	1.9	31	86	3	84	47	6	20	25	1.74
38664535--38664769	50	4.6	50	84	3	254	22	29	21	25	1.99
38664585--38664769	106	1.8	100	84	7	217	22	30	21	24	1.99
38665653--38665695	20	2.2	20	100	0	86	34	20	4	39	1.74
38666247--38666443	105	1.9	101	83	6	252	26	25	15	31	1.95
38669005--38669038	12	2.8	12	81	0	50	61	0	23	14	1.33
38673995--38674444	47	9.5	46	93	1	666	29	30	8	32	1.87
38680307--38680350	14	3.0	14	81	18	54	47	0	9	43	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199