genome.fa.s20.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  147  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43330956--43331205	40	6.3	40	84	6	303	24	19	27	28	1.99
43330955--43331205	119	2.1	120	88	2	382	24	19	27	28	1.99
43347149--43347312	30	5.5	30	74	7	145	23	23	12	40	1.89
43347138--43347312	60	2.9	60	88	0	251	23	22	14	40	1.90
43355306--43355334	8	3.6	8	100	0	58	75	0	0	24	0.80
43357304--43357346	19	2.2	20	84	12	63	32	18	0	48	1.48
43363798--43364005	27	7.7	27	82	8	226	41	19	15	24	1.89
43363798--43364019	81	2.7	80	82	5	252	42	18	15	23	1.88
43364196--43364245	26	1.9	26	91	0	82	14	26	22	38	1.91
43371483--43371516	16	2.2	15	89	5	50	44	0	0	55	0.99
43374842--43374929	45	2.0	45	95	0	158	37	9	18	35	1.82
43378268--43378306	15	2.8	13	82	14	51	43	5	12	38	1.65
43379957--43380126	40	4.3	40	87	1	216	24	20	29	25	1.99
43379977--43380159	79	2.3	80	82	1	226	25	21	28	24	1.99
43382425--43382555	34	3.8	34	86	2	181	19	23	14	41	1.88
43382411--43382555	69	2.1	68	89	1	227	19	24	13	43	1.86
43382429--43382579	69	2.2	69	87	0	212	21	21	16	40	1.91
43385372--43385416	20	2.1	22	84	12	58	13	11	8	66	1.44
43389568--43389910	29	11.8	29	78	6	302	37	12	26	23	1.90
43389568--43389909	58	5.9	56	81	8	346	37	12	26	23	1.90
43389584--43389909	87	3.7	87	79	8	358	37	12	26	23	1.90
43389568--43389908	116	2.9	116	87	0	468	37	12	26	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43390024--43390062	20	2.0	20	100	0	78	38	5	20	35	1.75
43391110--43391296	99	1.9	99	90	0	302	26	14	18	40	1.89
43393465--43393642	30	6.0	30	76	5	148	21	26	13	38	1.91
43393603--43393660	30	1.9	30	92	0	98	20	25	15	37	1.92
43395880--43396150	138	2.0	137	91	0	434	28	17	15	38	1.90
43407624--43407658	18	1.9	18	94	0	61	48	8	14	28	1.73
43409730--43409856	60	2.1	60	86	0	173	19	22	22	36	1.95
43412074--43412251	27	6.6	27	84	5	180	29	28	15	26	1.96
43412095--43412250	82	1.9	81	88	3	233	29	28	15	26	1.96
43420252--43420429	27	6.6	27	84	5	180	29	28	15	26	1.96
43420273--43420428	82	1.9	81	88	3	233	29	28	15	26	1.96
43434959--43435301	40	8.6	40	91	2	476	27	27	20	24	1.99
43442991--43443333	40	8.6	40	91	2	476	27	27	20	24	1.99
43445623--43445780	63	2.5	63	84	0	199	24	25	17	32	1.96
43448366--43448497	27	4.9	27	91	3	214	46	21	16	15	1.84
43455141--43455165	12	2.1	12	100	0	50	44	16	8	32	1.76
43457167--43457205	18	2.2	18	90	9	62	71	2	20	5	1.17
43458977--43459048	33	2.1	34	89	2	110	40	6	12	40	1.70
43460137--43460161	12	2.1	12	100	0	50	44	16	8	32	1.76
43462148--43462322	27	6.5	27	86	3	228	41	18	20	19	1.90
43462578--43462643	33	2.0	33	82	5	80	25	24	24	25	2.00
43464792--43464817	12	2.2	12	100	0	52	15	15	0	69	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43465773--43466025	27	9.4	27	77	8	223	43	18	15	22	1.87
43465773--43466025	54	4.7	53	78	7	260	43	18	15	22	1.87
43465773--43465997	81	2.8	81	79	7	260	44	19	14	21	1.86
43466386--43466530	28	5.2	29	80	7	165	24	22	22	31	1.99
43466386--43466530	56	2.6	56	84	0	191	24	22	22	31	1.99
43473549--43473605	16	3.6	16	71	19	57	29	15	7	47	1.72
43473541--43473601	16	3.8	16	75	12	54	29	16	9	44	1.80
43475043--43475084	20	2.1	20	90	0	66	50	0	2	47	1.14
43491190--43491276	43	2.0	43	97	0	165	37	24	6	31	1.82
43494095--43494154	30	2.0	30	83	6	77	30	16	21	31	1.96
43501184--43501243	22	2.9	22	80	7	63	43	23	21	11	1.85
43508901--43508947	14	3.4	14	76	5	51	44	0	23	31	1.54
43508901--43508956	27	2.1	27	96	0	103	42	0	23	33	1.54
43510438--43510489	20	2.6	20	84	0	68	44	13	7	34	1.72
43516900--43516962	33	1.9	33	87	6	92	28	25	19	26	1.98
43522229--43522475	50	4.8	50	82	4	219	26	22	28	23	1.99
43525329--43525528	27	7.4	27	73	11	133	41	19	19	20	1.91
43525329--43525523	54	3.6	54	80	8	184	40	20	18	20	1.92
43525329--43525532	81	2.5	83	77	10	199	41	19	18	20	1.91
43525341--43525563	54	4.1	54	76	10	161	39	20	19	20	1.93
43525570--43525678	24	4.5	24	77	4	94	24	9	22	44	1.82
43525570--43525678	48	2.3	48	84	6	132	24	9	22	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43525701--43525765	31	2.1	31	100	0	130	26	12	26	35	1.91
43525854--43526056	32	6.4	32	90	2	293	20	21	20	37	1.94
43526730--43526763	18	2.0	17	88	11	52	41	11	14	32	1.82
43530090--43530156	27	2.5	27	85	9	100	31	16	19	32	1.94
43533796--43533846	19	2.6	19	81	3	57	45	13	5	35	1.68
43539932--43540025	42	2.2	42	90	3	145	21	34	23	21	1.97
43550926--43550963	20	1.9	20	84	10	51	36	0	15	47	1.46
43551373--43551497	61	2.0	61	90	0	196	18	19	28	34	1.95
43563466--43563554	45	2.0	45	90	0	142	33	23	16	25	1.96
43563561--43563751	51	3.8	50	80	2	202	31	26	17	24	1.97
43567556--43567709	50	3.0	50	86	5	182	25	21	29	23	1.99
43567612--43567740	50	2.6	50	83	0	132	26	23	28	21	1.99
43567998--43568036	20	2.0	20	90	10	62	56	5	23	15	1.59
43571314--43571357	18	2.4	18	88	11	63	72	2	20	4	1.13
43573122--43573193	33	2.1	34	92	2	119	38	6	13	40	1.72
43585577--43585754	27	6.6	26	82	6	187	26	16	28	28	1.97
43585576--43585754	82	2.2	81	83	3	225	26	16	28	28	1.97
43602072--43602103	17	1.9	16	93	6	55	12	15	40	31	1.85
43604753--43604937	79	2.3	81	81	7	209	26	22	26	24	2.00
43604754--43604937	40	4.6	40	78	9	173	26	22	26	24	2.00
43611376--43611560	40	4.6	39	82	5	194	26	22	26	24	2.00
43611376--43611560	79	2.3	81	82	7	218	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43611429--43611593	79	2.1	79	80	6	183	27	20	26	25	1.99
43613090--43613190	35	2.9	35	85	2	123	38	16	22	21	1.93
43615826--43615859	16	2.1	16	88	0	50	20	14	20	44	1.87
43626629--43626809	51	3.5	51	80	1	200	25	17	28	27	1.98
43628877--43628936	21	2.9	20	74	13	59	16	3	6	73	1.18
43629452--43629487	19	1.9	19	88	5	56	22	11	5	61	1.50
43632435--43632492	22	2.6	23	78	8	57	65	10	5	18	1.41
43633128--43633524	204	1.9	204	85	3	539	42	11	14	31	1.81
43635467--43635499	16	2.1	16	94	0	57	39	6	33	21	1.78
43635713--43635754	15	2.7	16	82	14	52	52	2	0	45	1.13
43635722--43635763	15	2.9	15	82	10	52	52	0	0	47	1.00
43635711--43635956	119	2.0	120	92	3	406	50	5	1	43	1.32
43635870--43635961	38	2.4	37	82	12	107	52	4	1	42	1.28
43635852--43636053	94	2.2	94	97	2	381	52	3	1	42	1.29
43635853--43635976	38	3.4	36	68	23	96	53	3	0	42	1.22
43648441--43648528	3	30.0	3	84	8	119	31	1	2	64	1.13
43648564--43648642	28	2.7	31	79	11	96	41	11	1	45	1.48
43651416--43651528	56	2.0	56	91	1	181	24	26	19	29	1.98
43654297--43654369	27	2.7	27	87	8	96	43	10	0	45	1.39
43654320--43654382	27	2.3	27	86	2	81	42	9	0	47	1.36
43660410--43660577	40	4.2	40	80	9	139	27	27	20	24	1.99
43660447--43660577	40	3.3	39	86	4	181	29	27	19	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43660445--43660623	80	2.2	80	82	10	215	29	26	19	24	1.99
43663021--43663045	13	1.9	13	100	0	50	32	20	16	32	1.94
43663591--43663769	27	6.6	27	80	6	182	27	15	28	28	1.96
43663593--43663743	82	1.9	81	87	4	223	27	15	28	27	1.96
43663589--43663769	82	2.2	81	80	4	213	28	14	28	28	1.96
43671603--43671753	27	5.6	26	84	4	167	25	17	28	29	1.97
43671602--43671753	55	2.8	55	85	2	191	25	17	28	28	1.98
43671603--43671753	82	1.8	82	84	0	203	25	17	28	29	1.97
43671658--43671764	27	3.9	27	83	1	79	26	15	28	29	1.96
43676719--43676774	21	2.8	20	87	12	73	55	7	7	30	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199