genome.fa.s20.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  124  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35696207--35696331	61	2.0	61	86	3	171	51	4	3	40	1.39
35696207--35696309	31	3.4	31	73	11	95	52	4	3	38	1.41
35701333--35701372	9	4.4	9	93	0	62	40	25	10	25	1.86
35701936--35701971	16	2.2	17	90	5	56	52	0	0	47	1.00
35703555--35703706	27	5.6	27	93	3	241	30	28	13	26	1.94
35703555--35703706	55	2.8	55	94	0	259	30	28	13	26	1.94
35719180--35719255	9	8.4	9	86	5	109	27	11	18	42	1.85
35721722--35721755	15	2.2	16	89	5	52	76	11	0	11	1.02
35725518--35725557	14	2.9	14	84	0	53	32	7	17	42	1.77
35725541--35725600	20	3.0	20	95	0	102	26	10	13	50	1.73
35725593--35725677	32	2.6	31	76	9	89	25	10	18	44	1.82
35725710--35725737	14	2.0	14	100	0	56	42	0	0	57	0.99
35725927--35726069	71	2.0	72	94	1	252	43	20	8	27	1.81
35727012--35727080	35	1.9	36	97	2	131	52	18	2	26	1.60
35727048--35727123	27	2.8	28	82	4	93	53	22	2	21	1.57
35728610--35728642	15	2.1	16	94	5	59	60	6	18	15	1.54
35731198--35731265	25	2.6	27	84	15	97	39	8	26	25	1.85
35735772--35735825	25	2.2	25	83	6	65	57	12	7	22	1.60
35738669--35738703	3	11.7	3	87	0	52	65	0	5	28	1.15
35739335--35739366	15	2.1	15	94	0	55	56	0	0	43	0.99
35741119--35741148	6	4.8	6	92	8	51	70	13	0	16	1.18
35741989--35742082	46	2.0	46	100	0	188	22	23	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35746115--35746266	76	2.0	76	96	1	279	42	11	28	17	1.83
35759158--35759198	21	2.0	21	90	0	64	19	29	21	29	1.98
35763805--35763848	17	2.4	19	85	14	58	36	0	4	59	1.18
35769217--35769294	36	2.2	35	81	2	84	37	0	20	42	1.52
35769312--35769387	34	2.3	33	84	8	111	40	0	10	48	1.38
35769449--35769717	126	2.1	126	90	2	425	36	17	15	30	1.92
35772004--35772129	27	4.7	26	81	6	135	27	17	26	27	1.98
35772003--35772129	54	2.3	54	82	11	152	28	17	26	27	1.98
35779915--35780092	27	6.6	27	84	3	214	26	14	28	30	1.95
35779916--35780071	82	1.9	81	88	3	233	26	14	28	30	1.95
35779915--35780092	82	2.2	81	84	3	232	26	14	28	30	1.95
35782940--35783101	46	3.5	46	83	9	172	27	19	30	22	1.98
35783630--35783669	21	2.0	21	90	5	64	12	40	27	20	1.88
35788043--35788124	30	2.8	29	78	10	78	29	20	15	34	1.94
35790344--35790447	27	3.9	25	74	12	91	39	23	8	28	1.84
35790356--35790485	54	2.4	54	84	2	154	39	21	7	31	1.82
35790397--35790566	27	6.3	27	75	6	123	37	21	8	32	1.83
35790397--35790566	54	3.1	54	80	3	182	37	21	8	32	1.83
35790397--35790566	81	2.1	81	80	6	184	37	21	8	32	1.83
35790559--35791070	27	19.0	27	85	0	637	36	18	20	24	1.94
35791493--35791557	22	3.0	22	77	8	69	20	27	23	29	1.98
35791716--35791795	26	3.0	26	89	3	115	16	23	22	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35791723--35791795	27	2.8	26	89	4	110	17	24	20	36	1.94
35793970--35794061	24	3.8	24	92	0	139	35	31	11	20	1.89
35793928--35794058	48	2.7	48	80	6	131	35	29	12	23	1.91
35793925--35794061	72	1.9	72	83	3	177	34	29	12	23	1.91
35795147--35795180	17	2.0	17	94	0	59	38	5	0	55	1.24
35798886--35798920	18	1.9	18	94	0	61	57	8	14	20	1.63
35798892--35798970	6	12.8	6	70	15	54	49	12	18	18	1.79
35798904--35798970	25	2.7	25	88	0	98	47	13	19	19	1.82
35799087--35799137	27	1.9	26	84	4	66	39	15	25	19	1.91
35799300--35799364	22	3.0	22	80	8	78	30	23	26	20	1.98
35799752--35800237	27	18.0	27	86	0	549	24	18	18	37	1.94
35800229--35800406	27	6.6	26	77	5	126	31	7	21	39	1.82
35800294--35800406	27	4.2	27	86	3	140	29	7	21	41	1.81
35804439--35804472	13	2.6	13	100	0	68	0	29	38	32	1.58
35808793--35808878	45	1.9	44	83	6	111	23	25	25	25	2.00
35816730--35816948	45	4.9	45	92	2	302	22	21	29	26	1.99
35820614--35820667	26	2.1	26	82	0	63	31	22	20	25	1.98
35820651--35820846	27	7.3	27	84	4	182	39	22	8	30	1.83
35820797--35820986	27	7.0	27	83	0	218	32	23	5	38	1.77
35821524--35821587	27	2.4	26	77	12	67	17	20	25	37	1.93
35824713--35824832	56	2.1	56	87	0	168	29	26	16	27	1.97
35827067--35827198	50	2.6	51	86	3	194	34	15	12	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35838634--35838755	47	2.6	47	90	2	192	37	14	21	26	1.92
35838734--35838913	54	3.3	53	80	9	204	36	16	23	23	1.94
35850361--35850405	22	2.0	22	100	0	90	37	4	26	31	1.76
35856628--35856726	37	2.8	36	77	10	105	25	15	18	41	1.89
35878456--35878663	40	5.2	40	91	0	301	24	20	28	26	1.99
35878403--35878663	80	3.3	80	84	2	303	24	20	27	26	1.99
35878403--35878663	120	2.2	120	82	3	312	24	20	27	26	1.99
35895657--35895686	14	2.1	14	93	0	51	60	0	0	40	0.97
35900086--35900119	17	2.0	17	88	0	50	52	0	5	41	1.25
35900956--35901159	41	5.0	41	88	0	291	22	26	22	28	1.99
35900960--35901159	82	2.4	83	91	3	325	22	27	22	29	1.99
35900958--35901189	41	5.7	40	77	12	222	22	26	21	28	1.99
35900960--35901189	82	2.8	81	86	6	304	22	26	21	29	1.99
35900965--35901189	123	1.8	123	86	5	330	22	26	22	28	1.99
35903535--35903617	19	4.4	19	82	0	76	19	27	26	26	1.99
35904057--35904106	24	2.1	24	92	0	82	50	16	4	30	1.63
35908625--35908649	9	2.8	9	100	0	50	60	28	0	12	1.32
35915801--35915855	22	2.6	22	83	11	62	23	5	1	69	1.19
35916314--35916345	3	10.7	3	100	0	64	31	0	0	68	0.90
35916347--35916393	24	2.0	24	83	8	60	46	0	2	51	1.13
35916319--35916393	18	4.1	19	73	13	59	41	0	1	57	1.07
35916500--35916536	19	1.9	18	89	10	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35916497--35916544	18	2.5	20	80	10	64	56	0	0	43	0.99
35916385--35916561	89	1.9	95	84	11	242	49	3	3	43	1.38
35916722--35916771	26	1.9	26	91	0	82	40	6	6	48	1.52
35916949--35916973	13	1.9	13	100	0	50	64	4	0	32	1.12
35921382--35921430	20	2.5	19	80	6	53	67	12	10	10	1.43
35921388--35921431	20	2.2	20	87	0	61	68	11	11	9	1.40
35922260--35922296	19	1.9	19	88	0	56	40	0	5	54	1.24
35927393--35927530	42	3.5	40	74	18	137	31	27	18	22	1.97
35927435--35927563	33	3.6	33	71	18	105	36	27	17	18	1.94
35927391--35927565	76	2.3	76	89	1	262	33	28	18	19	1.96
35928867--35928948	36	2.3	36	91	0	128	14	41	3	40	1.64
35928867--35928948	18	4.6	18	87	3	112	14	41	3	40	1.64
35931547--35931598	25	2.1	25	85	7	70	57	7	3	30	1.45
35933098--35933149	24	2.2	24	85	0	68	50	11	3	34	1.57
35935826--35935870	22	2.0	22	91	0	72	42	2	33	22	1.66
35938248--35938297	25	2.0	26	88	4	75	66	10	10	14	1.46
35941378--35941430	19	2.7	21	74	14	58	37	0	1	60	1.08
35941920--35941947	6	4.7	6	100	0	56	0	67	0	32	0.91
35944490--35944540	24	2.2	24	77	22	56	33	0	5	60	1.21
35944696--35944762	34	1.9	35	87	3	100	46	13	8	31	1.74
35944731--35944770	14	2.9	14	84	0	53	42	17	7	32	1.77
35953456--35953598	41	3.5	41	88	0	205	30	20	18	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35954221--35954245	2	12.5	2	100	0	50	52	0	0	48	1.00
35956551--35956755	75	2.7	75	86	0	275	30	17	21	31	1.96
35977702--35977866	76	2.2	73	78	5	177	29	8	20	41	1.82
35986590--35986827	120	2.0	120	94	0	413	23	14	19	42	1.88
35993373--35993399	9	3.0	9	100	0	54	66	0	0	33	0.92
35994261--35994287	10	2.7	10	100	0	54	22	0	22	55	1.44
35996008--35996032	12	2.1	12	100	0	50	52	8	24	16	1.70
36002083--36002138	24	2.3	25	84	12	80	16	33	0	50	1.45
36003384--36003415	13	2.4	13	94	5	55	15	21	21	40	1.91
36006876--36006947	35	2.1	35	94	0	126	40	12	23	23	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199