genome.fa.s20.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  131  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37994424--37994545	44	2.8	44	81	7	158	27	26	19	26	1.99
37994887--37995005	51	2.4	51	82	4	143	27	22	15	34	1.94
37994979--37998256	50	65.6	50	75	2	2635	27	19	20	32	1.97
37995320--37998256	100	29.4	100	86	1	3253	27	19	21	32	1.97
37999658--37999692	13	2.6	14	91	8	56	2	11	0	85	0.69
38004843--38004984	71	2.0	71	92	0	239	35	19	18	27	1.95
38005419--38005481	26	2.4	26	81	0	72	50	1	6	41	1.37
38005664--38005719	27	2.0	28	82	3	69	46	3	10	39	1.56
38005750--38005785	6	6.0	6	93	6	56	80	0	0	19	0.71
38012212--38012245	11	3.2	11	91	4	52	70	0	0	29	0.87
38021210--38021243	17	2.1	17	88	5	52	50	0	17	32	1.47
38021642--38021739	42	2.3	42	92	0	160	35	10	27	26	1.89
38024947--38024990	22	2.1	20	87	8	61	54	4	2	38	1.33
38031404--38031470	32	2.1	32	97	0	125	35	11	11	40	1.79
38033344--38033399	28	2.1	27	84	12	73	25	3	5	66	1.29
38033407--38033458	21	2.4	22	80	9	61	26	1	7	63	1.32
38033838--38033885	24	2.0	24	84	8	62	37	2	0	60	1.09
38039165--38039212	23	2.1	23	88	0	69	27	20	14	37	1.92
38057621--38057658	20	1.9	20	94	0	67	63	0	5	31	1.17
38061643--38061681	12	3.2	12	88	0	51	20	20	5	53	1.64
38061945--38062077	50	2.7	50	80	0	131	20	29	22	27	1.98
38062739--38062858	56	2.1	56	98	0	231	45	9	23	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38064313--38064819	49	10.6	49	92	3	745	33	8	28	28	1.87
38064313--38064819	96	5.3	95	90	3	745	33	8	28	28	1.87
38072652--38072784	50	2.7	50	83	0	140	21	28	22	27	1.99
38087566--38087605	17	2.4	17	91	8	64	32	0	2	65	1.06
38090945--38091001	29	2.0	29	89	0	87	35	12	31	21	1.90
38096157--38096215	21	2.9	19	75	18	57	25	1	5	67	1.20
38106394--38106418	12	2.1	12	100	0	50	60	0	24	16	1.36
38114647--38114689	15	2.7	16	85	7	52	65	16	0	18	1.28
38118170--38118219	26	1.9	26	87	0	73	12	6	0	82	0.85
38118178--38118217	18	2.2	18	86	0	53	15	5	0	80	0.88
38125118--38125156	19	2.1	19	95	0	69	41	25	5	28	1.77
38129096--38129136	15	2.7	15	88	0	64	21	7	24	46	1.77
38130651--38130675	3	8.3	3	100	0	50	68	32	0	0	0.90
38134261--38134541	140	2.0	140	99	0	553	36	19	17	26	1.94
38137797--38137834	17	2.2	17	90	0	58	13	5	31	50	1.63
38148470--38148605	40	3.4	40	84	2	166	44	28	14	12	1.82
38150264--38150318	13	4.2	13	85	0	65	52	12	5	29	1.61
38163527--38163560	16	2.1	16	88	0	50	58	11	5	23	1.55
38164960--38164984	10	2.5	10	100	0	50	24	32	8	36	1.84
38182185--38182214	7	4.3	7	95	0	51	36	3	16	43	1.65
38187192--38187299	35	3.1	35	75	2	119	28	28	14	27	1.96
38191275--38191309	15	2.4	15	90	4	54	48	0	8	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38197778--38197855	4	18.5	4	79	17	63	21	3	0	74	0.98
38197771--38197848	5	15.4	5	75	19	56	20	3	0	75	0.95
38197771--38197863	31	3.1	30	83	10	120	21	4	0	74	0.99
38199541--38199575	15	2.4	15	90	4	54	48	0	8	42	1.33
38213470--38213586	49	2.4	49	78	9	123	31	30	14	23	1.94
38213999--38214069	34	2.1	34	97	0	133	40	25	14	19	1.89
38217717--38217751	7	5.0	7	92	0	61	28	2	28	40	1.71
38219619--38219685	22	3.0	21	80	4	53	28	23	22	25	1.99
38219646--38219693	22	2.2	22	92	0	78	27	29	22	20	1.99
38219661--38219735	22	3.4	22	80	10	73	32	33	17	17	1.93
38219447--38220016	287	2.0	288	86	3	801	29	19	22	27	1.98
38219945--38220040	43	2.2	44	86	1	131	26	33	21	18	1.97
38219897--38220052	22	7.1	22	75	9	104	25	29	23	21	1.99
38229327--38229351	13	1.9	13	100	0	50	0	12	0	88	0.53
38230317--38230349	6	5.5	6	92	0	57	81	3	0	15	0.80
38232061--38232142	21	4.0	20	78	9	67	73	2	6	18	1.15
38232078--38232142	29	2.3	28	84	10	87	73	0	7	18	1.06
38235368--38235394	14	1.9	14	100	0	54	74	7	3	14	1.18
38235649--38235678	14	2.1	14	93	0	51	46	13	0	40	1.43
38236518--38236576	17	3.5	17	100	0	118	15	27	37	20	1.92
38237132--38237165	17	1.9	17	88	5	50	64	2	11	20	1.39
38243547--38243581	14	2.5	14	95	0	61	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38244085--38244135	14	3.6	14	71	10	50	27	7	0	64	1.21
38257171--38257208	3	12.7	3	100	0	76	65	0	0	34	0.93
38262272--38262317	22	2.2	21	85	11	60	32	6	2	58	1.36
38264782--38264812	2	15.5	2	100	0	62	51	0	0	48	1.00
38264799--38264959	79	2.0	79	97	0	304	34	15	15	34	1.89
38265266--38265295	15	2.1	15	93	6	53	40	0	0	60	0.97
38268100--38268143	12	3.2	14	78	15	56	36	0	0	63	0.95
38271175--38271205	14	2.2	14	100	0	62	29	12	19	38	1.89
38274701--38274733	13	2.5	13	90	9	50	15	21	0	63	1.30
38274701--38274732	7	4.9	7	88	11	50	15	21	0	62	1.32
38274708--38274835	57	2.2	57	84	13	167	26	21	5	46	1.73
38283448--38283577	69	1.9	68	82	1	161	22	15	16	46	1.84
38287912--38287950	19	2.1	19	85	0	51	41	25	5	28	1.77
38289783--38289829	20	2.3	21	82	10	62	55	6	14	23	1.63
38289781--38289825	19	2.3	19	82	14	56	55	6	13	24	1.62
38306556--38306603	24	2.0	24	84	8	62	50	6	25	18	1.70
38306654--38306702	21	2.3	21	96	0	89	14	28	16	40	1.87
38306673--38306830	42	3.8	42	76	0	145	16	23	17	42	1.89
38306653--38306835	21	8.8	21	72	3	84	15	23	17	43	1.88
38320557--38320591	18	1.9	18	88	11	54	22	20	0	57	1.41
38325062--38325096	18	1.9	18	88	11	54	22	20	0	57	1.41
38327978--38328048	37	1.9	37	86	11	101	76	2	18	2	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38327988--38328037	6	8.2	6	83	14	50	76	2	20	2	0.99
38328097--38328127	12	2.6	12	100	0	62	45	12	16	25	1.83
38328131--38328160	11	2.7	11	89	0	51	73	0	20	6	1.05
38330306--38330402	30	3.2	30	75	2	106	28	26	15	28	1.96
38332455--38332512	10	5.7	10	76	11	64	29	27	13	29	1.94
38332455--38332515	20	3.0	20	83	9	79	27	26	13	32	1.93
38333946--38333988	14	3.1	14	80	10	52	72	2	23	2	1.08
38344770--38344947	27	6.6	27	77	6	137	30	28	15	25	1.96
38344770--38344947	54	3.3	54	78	7	164	30	28	15	25	1.96
38350917--38350985	14	4.6	14	67	22	50	66	0	5	27	1.14
38350891--38350944	20	2.8	19	78	10	56	68	1	5	24	1.21
38350915--38351009	47	2.0	47	100	0	190	63	0	6	30	1.19
38357112--38357136	13	1.9	13	100	0	50	32	0	0	68	0.90
38357503--38357549	24	1.9	25	86	4	69	14	23	8	53	1.69
38362583--38362607	11	2.3	11	100	0	50	92	8	0	0	0.40
38363934--38364029	13	7.4	14	73	20	50	48	0	2	48	1.13
38363962--38364005	23	2.0	22	86	13	63	47	0	4	47	1.22
38363988--38364024	16	2.3	16	86	13	58	40	0	0	59	0.97
38364035--38364074	20	2.0	20	100	0	80	60	0	0	40	0.97
38366740--38366787	24	2.0	24	100	0	96	37	8	16	37	1.79
38367699--38367766	26	2.4	26	77	20	66	50	2	1	45	1.26
38370709--38370771	24	2.7	24	85	7	76	31	11	17	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38373820--38373850	16	1.9	16	93	0	53	41	9	0	48	1.36
38381877--38381969	28	3.3	28	79	5	82	36	20	15	27	1.92
38382024--38382139	56	2.1	56	81	3	135	26	24	18	31	1.97
38382235--38382292	26	2.2	26	96	0	107	22	24	17	36	1.95
38390288--38390667	210	1.8	210	85	0	535	30	19	10	39	1.85
38390897--38390997	21	4.9	20	72	6	69	28	11	25	33	1.91
38391823--38391902	40	2.0	41	90	2	126	31	10	27	31	1.89
38390892--38392757	932	2.0	931	97	0	3543	31	13	18	36	1.90
38392741--38392781	20	2.0	20	85	4	55	31	4	4	58	1.40
38394511--38394583	37	2.0	37	100	0	146	35	16	12	35	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199