genome.fa.s20.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  47  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13916182--13916300	21	5.7	21	64	11	73	44	17	20	17	1.87
13916182--13916299	42	2.8	42	85	2	166	44	17	20	17	1.87
13924419--13924468	27	2.0	25	85	14	68	42	12	4	42	1.60
13926549--13926707	28	5.7	28	77	5	124	23	14	6	55	1.61
13927963--13928012	24	2.2	21	82	10	55	40	10	10	40	1.72
13927970--13928012	21	1.9	23	86	13	63	39	6	9	44	1.64
13938272--13938328	23	2.3	26	85	11	75	45	5	7	42	1.53
13950111--13950161	13	3.9	13	94	0	84	23	11	25	39	1.89
13950388--13950434	20	2.5	19	75	6	51	55	2	2	40	1.24
13953281--13953322	18	2.4	17	84	15	50	57	7	0	35	1.26
13953317--13953346	15	2.0	15	93	0	51	40	10	0	50	1.36
13953908--13953979	9	7.3	10	85	13	62	11	5	0	83	0.80
13953905--13953943	13	3.2	13	85	10	55	0	12	0	87	0.55
13953908--13954002	8	11.9	8	76	10	61	14	4	0	81	0.85
13953947--13953992	4	12.2	4	86	13	71	23	0	0	76	0.79
13953941--13954002	22	2.9	22	83	11	83	22	0	0	77	0.77
13953941--13954002	26	2.4	25	92	7	99	22	0	0	77	0.77
13953941--13954002	18	3.5	17	82	10	72	22	0	0	77	0.77
13955044--13955112	17	4.1	17	70	22	65	73	0	4	21	1.00
13955044--13955111	4	16.5	4	74	19	52	73	0	4	22	1.01
13961547--13961582	15	2.5	14	86	8	54	44	8	0	47	1.33
13963753--13964036	136	2.1	136	87	1	408	26	23	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13963735--13964017	69	4.1	68	69	8	171	25	24	19	31	1.98
13965213--13965276	25	2.5	27	82	7	80	43	0	0	56	0.99
13965222--13965271	14	3.6	14	79	15	59	42	0	0	58	0.98
13965217--13965271	27	2.0	29	89	7	87	43	0	0	56	0.99
13981797--13981896	41	2.4	42	81	6	116	31	24	18	27	1.97
13983685--13983858	41	4.2	41	89	0	249	28	24	21	25	1.99
13983646--13983858	82	2.6	82	79	3	250	27	24	21	26	1.99
13986862--13986890	13	2.3	13	94	5	51	44	20	3	31	1.68
13994595--13994641	14	3.4	14	77	16	53	70	2	6	21	1.20
13994727--13995495	325	2.4	318	89	5	1174	50	7	12	29	1.68
13998080--13998231	46	3.4	46	90	2	238	27	23	14	34	1.93
13999518--13999627	37	3.0	37	94	1	195	24	21	16	37	1.93
13999591--13999905	52	6.2	52	84	7	384	29	22	13	34	1.92
13999591--13999911	98	3.3	98	83	10	429	29	22	13	34	1.92
14003197--14004654	726	2.0	726	99	0	2862	32	16	9	41	1.79
14007065--14007090	6	4.3	6	100	0	52	15	30	0	53	1.42
14013006--14013070	20	3.4	19	69	14	62	33	4	16	44	1.69
14012981--14013093	37	3.1	37	92	1	192	31	4	15	47	1.66
14012990--14013096	17	5.9	17	65	16	54	30	2	15	50	1.59
14013100--14013166	9	7.0	9	74	12	62	23	5	28	41	1.78
14013096--14013166	29	2.4	29	92	0	124	23	7	26	42	1.80
14013096--14013166	20	3.7	19	73	15	74	23	7	26	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14014209--14014320	40	2.8	41	81	9	115	50	8	5	35	1.57
14020039--14020095	2	28.5	2	96	0	105	49	1	49	0	1.11
14024834--14024889	22	2.5	23	82	2	69	51	1	1	44	1.22
14024865--14024904	16	2.5	16	91	0	62	47	2	7	42	1.45
14024893--14025157	66	4.1	66	94	3	454	40	4	8	45	1.56
14025224--14025266	23	1.9	22	90	4	68	60	2	0	37	1.10
14026005--14026078	22	3.5	22	71	23	77	60	17	4	17	1.51
14026015--14026085	19	3.6	19	72	10	70	57	18	5	18	1.59
14026034--14026063	11	2.7	11	89	0	51	60	13	10	16	1.59
14026479--14026504	9	2.9	9	100	0	52	11	34	19	34	1.88
14028959--14029089	13	10.2	13	78	9	126	54	4	3	37	1.39
14028959--14029054	40	2.4	40	91	3	149	55	5	3	36	1.38
14028927--14029079	27	5.9	27	76	8	115	54	4	3	37	1.37
14029039--14029080	22	2.0	21	90	4	66	54	4	2	38	1.34
14029180--14029215	14	2.6	14	95	0	63	66	2	11	19	1.35
14029212--14029251	15	2.7	15	92	0	62	47	2	10	40	1.50
14029287--14029417	13	10.2	13	75	9	117	53	5	4	36	1.44
14029287--14029417	40	3.4	40	82	14	159	53	5	4	36	1.44
14028905--14029531	328	1.9	328	94	0	1119	51	5	6	36	1.50
14030678--14030745	29	2.3	30	84	5	93	55	26	4	13	1.56
14032499--14032664	37	4.5	37	96	0	296	25	19	16	37	1.93
14032628--14032896	46	5.6	46	81	11	315	28	22	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14032671--14032890	52	4.3	52	83	8	290	27	22	14	35	1.92
14032628--14032896	98	2.7	98	91	2	441	28	22	14	35	1.93
14036032--14036235	49	4.0	50	83	10	241	32	29	13	24	1.94
14036116--14036234	58	2.0	59	98	1	231	31	31	13	23	1.93
14036125--14036215	28	3.2	28	66	22	80	27	31	15	25	1.95
14037505--14037670	37	4.5	37	96	0	296	25	19	16	37	1.93
14037634--14037902	46	5.6	46	81	11	315	28	22	14	35	1.93
14037677--14037896	52	4.3	52	83	8	290	27	22	14	35	1.92
14037634--14037902	98	2.7	98	91	2	441	28	22	14	35	1.93
14041033--14041236	49	4.0	50	83	10	241	32	29	13	24	1.94
14041117--14041235	58	2.0	59	98	1	231	31	31	13	23	1.93
14041126--14041216	28	3.2	28	66	22	80	27	31	15	25	1.95
14042506--14042671	37	4.5	37	96	0	296	25	19	16	37	1.93
14042635--14042903	46	5.6	46	81	11	315	28	22	14	35	1.93
14042678--14042897	52	4.3	52	83	8	290	27	22	14	35	1.92
14042635--14042903	98	2.7	98	91	2	441	28	22	14	35	1.93
14045574--14045603	15	1.9	16	93	6	53	13	10	3	73	1.21
14045600--14045625	13	2.0	13	100	0	52	15	38	15	30	1.88
14046571--14046678	54	2.0	54	100	0	216	29	12	22	35	1.91
14047145--14047193	25	2.0	25	84	8	64	12	18	20	48	1.79
14047690--14047896	57	3.5	56	77	16	222	49	6	11	33	1.63
14047757--14047905	67	2.2	67	95	0	271	51	7	10	30	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14047880--14047905	12	2.2	12	100	0	52	57	11	7	23	1.59
14051549--14051623	15	5.3	15	72	16	70	42	0	1	56	1.08
14051539--14051709	41	4.2	41	67	23	112	43	1	3	51	1.26
14051458--14051717	107	2.3	112	86	9	345	43	1	4	50	1.30
14051846--14051944	44	2.3	44	83	11	118	37	28	4	30	1.75
14051862--14051951	46	2.0	46	89	4	139	38	27	4	28	1.76
14051931--14051967	16	2.3	16	95	0	65	21	32	5	40	1.76
14062837--14062931	47	2.0	47	97	0	181	23	17	23	35	1.95
14064085--14064118	15	2.2	16	89	5	52	20	5	11	61	1.50
14065129--14065162	12	2.8	12	86	4	50	82	8	2	5	0.93
14065234--14065272	18	2.2	18	86	9	53	61	2	0	35	1.10
14065229--14065271	17	2.5	18	81	7	54	53	2	0	44	1.13
14078745--14078797	26	2.0	26	89	7	81	39	7	16	35	1.78
14086993--14087048	28	2.0	28	100	0	112	25	35	10	28	1.89
14091227--14091263	7	5.3	7	100	0	74	72	0	0	27	0.84
14093976--14094012	16	2.2	17	90	4	58	48	0	0	51	1.00
14093990--14094057	19	3.2	21	74	20	61	44	0	5	50	1.26
14094003--14094054	18	2.8	19	85	8	63	40	0	7	51	1.30
14103324--14103387	33	2.0	32	84	6	85	35	12	12	39	1.81
14106405--14106449	24	2.0	24	91	8	76	48	2	4	44	1.35
14108457--14108584	64	2.0	64	93	0	220	38	2	22	36	1.67
14116612--14116642	15	2.1	15	93	0	53	32	16	6	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14117693--14117721	15	1.9	15	100	0	58	27	20	13	37	1.91
14121036--14121383	52	6.9	52	85	7	468	34	14	22	28	1.93
14121088--14121394	98	3.1	98	91	1	438	35	14	22	28	1.93
14121022--14121383	150	2.4	144	92	5	580	34	14	22	28	1.93
14121358--14121577	37	6.0	37	95	1	381	37	16	21	24	1.93
14122829--14122996	58	3.0	58	87	10	237	22	13	30	33	1.92
14122848--14122938	28	3.2	28	66	22	80	25	15	31	27	1.95
14122889--14123031	49	2.9	49	93	0	232	23	13	30	32	1.94
14126169--14126516	52	6.9	52	85	7	459	35	14	21	28	1.93
14126155--14126516	150	2.4	144	90	5	553	34	14	21	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199