genome.fa.s20.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  52  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15286844--15287014	86	2.0	86	89	0	261	36	10	18	35	1.85
15290118--15290166	26	1.9	25	91	4	80	30	14	12	42	1.82
15293592--15293669	26	3.0	26	82	1	93	38	10	23	28	1.87
15294680--15294706	13	2.1	13	100	0	54	29	7	7	55	1.55
15295867--15296063	45	4.4	45	89	1	288	21	18	18	41	1.91
15298590--15298780	41	4.6	41	96	0	337	28	20	27	24	1.99
15301720--15301772	19	2.8	19	80	5	54	22	11	0	66	1.24
15301741--15301788	17	2.7	17	83	6	51	16	8	2	72	1.18
15307337--15307366	10	3.1	10	95	4	53	6	60	33	0	1.23
15307523--15307585	30	2.1	30	96	0	117	57	15	3	23	1.53
15311307--15311355	24	2.0	24	85	14	66	51	0	6	42	1.27
15311304--15311352	16	3.1	16	77	14	57	48	0	8	42	1.32
15316840--15316883	22	2.0	22	86	0	61	52	0	0	47	1.00
15316883--15316921	18	2.2	18	86	9	53	41	2	2	53	1.28
15316907--15316943	16	2.3	16	86	13	58	59	0	0	40	0.97
15316976--15317033	15	3.6	15	74	17	62	50	1	0	48	1.11
15318566--15318607	6	7.0	6	97	0	75	35	0	14	50	1.43
15318698--15318814	36	3.5	35	73	23	126	56	1	9	32	1.41
15318642--15318856	62	3.6	62	88	6	304	57	0	8	33	1.36
15319171--15319220	3	17.3	3	75	8	50	58	0	4	38	1.17
15320266--15320331	26	2.4	27	80	16	75	37	10	1	50	1.47
15320400--15320477	27	2.9	27	88	0	120	29	23	32	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15320552--15320621	19	3.7	19	82	3	97	37	10	0	52	1.35
15320557--15320627	37	1.9	37	100	0	142	39	11	0	49	1.39
15320825--15320880	18	3.0	19	73	5	69	39	12	0	48	1.41
15320901--15320971	37	1.9	37	100	0	142	49	0	11	39	1.39
15320907--15320975	19	3.7	19	82	5	97	52	0	10	37	1.36
15321051--15321128	27	2.9	27	92	0	129	16	32	21	29	1.96
15322929--15323093	43	3.9	41	77	9	136	21	19	29	30	1.97
15322980--15323093	41	2.7	43	82	2	133	24	19	28	27	1.98
15325126--15325168	20	2.2	20	86	0	59	25	20	25	27	1.99
15325861--15325903	14	3.1	14	79	0	50	0	30	0	69	0.88
15325874--15325903	11	2.7	11	94	0	51	0	23	0	76	0.78
15328144--15328197	26	2.1	26	82	6	65	50	7	11	31	1.66
15329398--15329482	42	2.0	41	88	2	125	37	3	10	48	1.55
15330382--15330407	3	8.7	3	100	0	52	0	30	0	69	0.89
15334983--15335283	46	6.3	48	86	8	393	35	14	21	28	1.93
15334921--15335272	98	3.6	98	96	0	623	34	15	21	28	1.94
15335247--15335392	37	4.0	37	93	1	242	36	16	21	24	1.94
15338130--15338192	32	2.0	32	96	0	117	26	44	11	17	1.82
15339799--15339888	41	2.2	41	89	0	135	16	23	34	25	1.95
15347970--15348091	23	5.3	23	89	0	190	21	20	27	31	1.98
15347972--15348091	46	2.6	46	95	0	213	20	20	27	30	1.98
15350440--15350531	17	5.5	17	71	19	59	41	3	2	53	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15350486--15350519	14	2.3	14	90	10	50	41	0	2	55	1.15
15358110--15358136	13	2.1	13	100	0	54	40	0	0	59	0.98
15359007--15359071	31	2.1	31	97	0	121	38	0	1	60	1.07
15359041--15359160	42	3.0	39	72	21	115	40	4	1	54	1.30
15359045--15359104	19	3.1	19	72	13	59	38	3	0	58	1.15
15359045--15359106	20	3.1	20	73	13	65	38	3	0	58	1.15
15363633--15363773	44	3.2	44	87	3	194	40	21	4	32	1.75
15364518--15364614	44	2.2	44	83	3	117	27	26	19	25	1.99
15365473--15365507	15	2.3	15	90	0	52	25	5	2	65	1.28
15380461--15381227	417	1.8	414	83	5	1028	36	19	16	27	1.93
15384901--15384935	18	1.9	18	88	0	52	77	5	0	17	0.96
15385402--15385506	52	2.0	52	98	0	201	42	9	20	27	1.82
15386638--15386743	56	1.9	56	84	5	144	31	5	4	58	1.42
15388865--15388889	11	2.3	11	100	0	50	28	0	16	56	1.41
15410315--15410348	17	2.0	17	88	0	50	47	0	0	52	1.00
15410438--15410489	15	3.6	15	80	12	56	44	0	1	53	1.11
15410194--15410610	120	3.5	120	95	1	739	43	1	5	49	1.35
15410554--15410588	18	2.0	17	88	5	52	45	0	0	54	0.99
15410730--15410834	44	2.5	40	76	15	113	31	29	4	34	1.78
15410728--15410837	45	2.6	44	81	8	131	31	29	5	33	1.80
15410818--15410869	16	3.2	16	88	0	77	34	34	0	30	1.58
15411745--15411789	3	16.0	3	77	13	51	64	2	0	33	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15416625--15416698	39	2.0	37	89	7	114	56	10	5	27	1.55
15417037--15417084	22	2.2	22	85	7	62	20	39	0	39	1.53
15417037--15417084	11	4.4	10	80	17	51	20	39	0	39	1.53
15418624--15418917	126	2.3	126	93	0	491	28	21	17	32	1.96
15419736--15419805	21	3.3	20	74	18	63	52	2	1	42	1.24
15420479--15420519	18	2.2	19	91	4	66	73	2	0	24	0.96
15421181--15421465	91	3.1	91	89	1	410	31	19	15	32	1.93
15421271--15421398	23	5.6	23	65	15	77	32	20	14	32	1.93
15421508--15421573	30	2.2	30	86	0	87	27	27	21	24	1.99
15421508--15421557	15	3.3	15	83	10	66	26	26	22	26	2.00
15425478--15425528	24	2.2	23	79	6	59	39	1	1	56	1.22
15433974--15434016	22	1.9	22	85	4	59	27	11	39	20	1.88
15432808--15434927	707	3.0	706	94	1	3813	29	15	24	30	1.96
15443203--15443256	20	2.7	19	80	16	56	35	1	7	55	1.39
15445294--15445331	6	6.3	6	88	11	60	0	50	2	47	1.15
15452756--15452793	6	6.3	6	88	11	60	0	50	2	47	1.15
15460026--15460202	88	2.0	87	83	1	219	33	14	26	25	1.95
15465916--15465965	26	2.0	24	84	7	64	36	8	0	56	1.29
15466294--15466505	107	2.0	107	93	0	361	29	19	19	32	1.96
15469248--15469292	20	2.4	19	85	10	58	44	4	6	44	1.50
15469204--15469332	69	1.9	69	86	1	188	40	3	6	48	1.48
15473796--15474377	290	2.0	290	95	0	1047	30	13	17	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15474919--15474949	15	2.1	15	93	0	53	29	3	6	61	1.37
15479749--15479798	9	5.6	9	82	0	55	42	22	8	28	1.81
15479749--15479803	18	3.1	18	80	12	69	41	21	9	27	1.83
15481988--15482057	29	2.3	30	85	4	88	34	7	14	44	1.72
15482011--15482068	29	2.0	29	86	0	80	31	5	13	50	1.64
15482244--15482300	29	1.9	30	85	3	80	43	12	5	38	1.65
15483742--15483814	36	2.0	36	100	0	146	24	34	5	35	1.79
15484182--15484241	31	1.9	31	89	0	93	33	10	21	35	1.87
15487504--15487612	49	2.2	49	85	3	139	26	26	13	33	1.94
15487528--15487637	49	2.3	49	78	7	109	27	24	14	33	1.94
15489234--15489265	3	10.7	3	100	0	64	34	0	0	65	0.93
15491711--15491735	2	12.5	2	100	0	50	52	0	0	48	1.00
15493581--15493631	25	2.1	24	79	20	61	43	5	11	39	1.66
15496590--15497215	81	7.7	79	77	8	514	34	15	23	26	1.95
15496597--15497347	162	4.8	157	78	9	658	34	16	22	26	1.95
15496590--15497135	243	2.2	243	93	0	923	34	15	22	26	1.95
15496590--15497347	243	3.2	240	84	7	872	34	16	22	26	1.95
15497152--15497281	66	2.0	66	86	3	181	32	16	22	29	1.95
15497071--15497347	147	1.9	147	85	3	387	35	16	23	25	1.95
15498838--15498870	6	5.5	6	100	0	66	66	0	0	33	0.92
15504366--15504391	6	4.3	6	100	0	52	30	0	38	30	1.58
15504393--15504425	17	1.9	18	88	11	52	48	0	9	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15516698--15516743	20	2.3	20	85	7	58	26	0	2	71	0.97
15517072--15517104	17	1.9	17	93	0	57	57	3	3	36	1.29
15519100--15519347	50	4.8	50	86	4	309	27	22	29	21	1.99
15519104--15519348	99	2.4	104	84	6	329	26	22	28	22	1.99
15526687--15526935	50	4.8	50	87	3	309	26	22	29	22	1.99
15529745--15529801	11	5.4	11	72	8	55	45	8	10	35	1.70
15530991--15531110	44	2.7	44	79	5	134	57	6	8	27	1.53
15532877--15532905	12	2.4	12	100	0	58	17	20	13	48	1.81
15533653--15533685	13	2.5	13	100	0	66	57	0	0	42	0.98
15542204--15542244	21	2.0	21	90	0	64	29	21	29	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199