genome.fa.s20.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  133  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38682599--38682649	16	3.4	16	77	17	56	80	0	11	7	0.90
38682610--38682665	25	2.4	23	82	14	62	78	0	8	12	0.96
38682599--38682664	31	2.2	31	81	13	75	78	0	10	10	0.96
38684774--38684815	16	2.7	16	85	3	50	19	50	4	26	1.67
38692806--38692847	5	7.7	6	87	12	56	71	0	0	28	0.86
38692808--38692847	12	3.0	14	76	23	50	70	0	0	30	0.88
38692797--38692845	21	2.3	21	86	10	73	73	0	2	24	0.94
38705481--38705515	3	11.7	3	100	0	70	0	0	31	68	0.90
38707450--38707499	19	2.7	19	82	14	61	54	0	4	42	1.19
38709352--38709433	44	1.9	43	87	7	123	62	2	20	14	1.43
38709350--38709450	44	2.3	44	81	13	120	62	1	22	12	1.40
38710942--38710985	20	2.2	20	84	8	54	36	9	4	50	1.55
38713983--38714162	50	3.6	50	79	2	184	25	27	20	27	1.99
38714071--38714177	50	2.1	50	89	0	169	21	32	20	25	1.97
38715917--38715957	21	2.1	19	86	9	55	36	29	7	26	1.83
38725613--38725727	22	5.1	22	74	14	99	41	16	23	18	1.89
38725637--38725738	22	4.3	24	77	13	88	39	15	25	19	1.91
38725613--38725726	47	2.5	47	85	4	153	41	16	23	18	1.90
38726819--38726911	5	18.6	5	74	14	77	55	2	2	39	1.24
38726808--38726915	15	7.1	15	69	16	55	53	1	1	42	1.22
38730717--38730745	9	3.2	9	100	0	58	34	31	0	34	1.58
38738632--38738681	15	3.3	15	86	5	66	36	18	0	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38743658--38743719	27	2.3	27	97	0	115	61	1	4	32	1.27
38743904--38743977	37	2.0	37	100	0	148	51	18	2	27	1.60
38746584--38746773	50	3.8	50	90	0	290	21	30	22	26	1.98
38752847--38753234	40	9.7	40	95	0	677	21	27	20	30	1.98
38759463--38759585	55	2.2	56	88	2	176	26	12	28	33	1.92
38759463--38759585	28	4.4	28	90	2	176	26	12	28	33	1.92
38759488--38759598	28	4.0	27	90	3	116	28	11	26	33	1.91
38762106--38762252	41	3.6	41	84	3	190	25	28	17	28	1.97
38762739--38763073	114	2.9	114	97	0	618	40	14	3	41	1.62
38764045--38764069	13	1.9	13	100	0	50	68	24	0	8	1.16
38764463--38764496	6	5.7	6	85	0	50	2	20	0	76	0.92
38767476--38767527	24	2.2	24	89	0	77	38	3	5	51	1.44
38777629--38777736	29	3.7	29	70	1	72	25	18	18	37	1.94
38780190--38780357	40	4.2	40	82	8	139	27	26	20	25	1.99
38780227--38780357	40	3.3	39	86	4	181	28	26	20	24	1.99
38780225--38780410	80	2.3	80	82	9	220	27	26	20	24	1.99
38788137--38788322	80	2.3	80	83	9	220	28	27	20	23	1.99
38788102--38788322	40	5.6	40	80	9	195	27	27	20	24	1.99
38795765--38795936	40	4.2	40	84	12	215	23	22	27	26	1.99
38814076--38814241	78	2.2	78	95	2	300	42	7	15	34	1.75
38819666--38819721	17	3.4	17	70	9	62	17	23	41	17	1.90
38819660--38819702	17	2.3	19	76	19	54	11	23	44	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38833368--38833408	20	2.0	20	85	0	55	46	21	0	31	1.52
38837441--38837484	20	2.2	21	88	8	65	20	18	4	56	1.58
38847189--38847411	40	5.6	39	82	5	207	25	26	21	26	1.99
38847187--38847411	80	2.8	81	80	7	237	25	27	21	25	1.99
38847343--38847420	40	1.9	41	82	10	97	26	28	20	24	1.99
38854074--38854205	40	3.3	40	84	3	142	27	28	19	24	1.99
38854102--38854204	39	2.6	40	84	1	136	28	29	17	25	1.97
38854102--38854256	79	2.0	80	80	6	181	26	28	20	25	1.99
38855385--38855504	56	2.1	56	100	0	240	22	24	9	44	1.82
38862572--38862655	42	2.0	42	100	0	168	26	9	26	38	1.87
38874058--38874235	27	6.6	27	77	6	137	30	28	15	25	1.96
38874058--38874235	54	3.3	54	78	7	164	30	28	15	25	1.96
38882048--38882225	27	6.6	27	77	6	137	30	28	15	25	1.96
38882048--38882225	54	3.3	54	78	7	164	30	28	15	25	1.96
38885124--38885153	8	3.8	8	90	0	51	53	16	23	6	1.66
38885124--38885155	16	2.0	16	100	0	64	50	18	25	6	1.70
38886308--38886567	27	9.7	27	83	5	305	33	18	20	27	1.96
38886600--38886656	24	2.4	24	81	0	69	22	7	21	49	1.73
38886727--38886780	27	2.0	27	86	13	76	22	25	20	31	1.98
38886826--38886886	32	1.9	32	89	0	95	24	22	18	34	1.96
38887873--38887928	27	2.1	27	93	0	94	39	16	16	28	1.89
38888890--38888943	28	1.9	28	81	7	65	48	11	11	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38893944--38893997	25	2.1	26	86	10	76	31	3	1	62	1.23
38899908--38899967	18	3.1	18	73	20	50	48	1	3	46	1.28
38900094--38900134	21	2.0	21	90	0	64	41	7	21	29	1.80
38904498--38904538	21	1.9	22	85	5	57	12	21	26	39	1.89
38906105--38906225	57	2.1	58	85	1	163	28	20	5	45	1.74
38918715--38918757	14	3.1	13	80	12	50	79	6	4	9	1.06
38923478--38923610	66	2.0	66	85	2	178	27	15	13	43	1.84
38932368--38932400	9	3.7	9	92	8	50	36	21	12	30	1.90
38932593--38932705	39	2.9	40	90	3	178	20	2	24	52	1.59
38933061--38933090	14	2.1	14	100	0	60	6	23	13	56	1.60
38952337--38952419	37	2.2	37	85	4	105	36	25	15	22	1.94
38954605--38954684	29	2.6	30	76	11	72	38	25	16	20	1.92
38955115--38955253	51	2.6	53	81	5	156	26	21	14	37	1.92
38957398--38957579	51	3.6	51	81	2	197	23	15	30	30	1.96
38964119--38964306	51	3.7	49	84	4	225	22	17	29	30	1.97
38964220--38964300	26	3.2	26	67	28	73	20	13	30	34	1.92
38964116--38964306	102	1.9	101	89	3	294	23	17	29	29	1.97
38964524--38964555	16	2.0	16	93	0	55	59	0	15	25	1.36
38971430--38971494	28	2.3	28	75	2	67	30	24	9	35	1.87
38971530--38971595	27	2.4	27	73	9	64	31	25	18	24	1.97
38971584--38972060	27	17.7	27	79	3	442	26	23	15	35	1.94
38972524--38972809	42	6.8	42	91	2	450	33	21	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38972964--38972997	14	2.4	14	95	0	59	52	20	8	17	1.71
38978742--38978906	18	9.5	18	65	30	60	34	0	20	45	1.51
38978787--38979192	26	16.1	26	87	6	570	32	0	20	46	1.56
38978885--38979188	19	16.5	19	64	26	88	32	0	20	46	1.57
38979052--38979173	18	6.4	18	67	26	74	35	1	18	44	1.60
38978787--38979192	51	8.0	51	88	6	562	32	0	20	46	1.56
38979229--38979378	73	2.1	73	100	0	300	41	6	1	50	1.37
38979260--38979372	35	3.1	35	67	16	104	38	7	1	52	1.41
38979524--38979594	13	5.5	13	86	0	106	50	2	7	39	1.44
38979523--38979594	26	2.8	26	100	0	144	50	2	6	40	1.44
38982396--38982712	115	2.8	114	93	1	553	38	18	15	27	1.91
38982461--38982539	40	2.0	40	84	0	104	34	18	16	30	1.94
38982577--38982654	40	2.0	39	82	7	95	34	19	16	29	1.94
38982616--38982787	75	2.3	74	94	2	299	39	18	13	28	1.89
38982501--38982879	189	2.0	189	89	1	580	39	18	14	26	1.90
38982876--38983152	114	2.4	115	81	3	308	32	22	17	27	1.96
38983665--38983838	7	25.1	7	66	16	60	40	38	3	17	1.67
38983744--38983800	27	2.1	27	93	0	96	40	45	1	12	1.52
38983744--38983788	20	2.2	21	88	4	65	40	46	2	11	1.52
38984270--38984407	73	1.9	72	86	4	197	30	19	21	28	1.98
38984307--38984633	113	2.9	114	84	2	408	29	23	21	25	1.99
38984604--38984733	39	3.3	38	78	10	127	22	18	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38989313--38989350	20	1.9	20	94	0	67	39	21	13	26	1.89
39003187--39003230	14	3.0	14	80	9	52	61	2	20	15	1.45
39003530--39003778	50	4.9	50	78	5	209	23	27	21	28	1.99
39014459--39015764	435	3.0	435	97	0	2414	32	22	13	31	1.93
39019050--39019223	50	3.5	50	88	0	240	20	28	23	27	1.99
39023035--39023114	27	3.0	27	85	3	108	22	27	15	35	1.94
39023152--39023443	27	10.9	27	83	4	297	26	24	17	32	1.96
39023152--39023443	81	3.6	80	82	3	345	26	24	17	32	1.96
39025744--39025895	35	4.3	35	86	0	169	15	11	31	40	1.84
39029791--39029824	17	2.0	17	94	0	59	55	0	8	35	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199