genome.fa.s20.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  145  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42619102--42619390	27	10.8	27	82	0	332	18	15	22	43	1.88
42622683--42622787	41	2.6	41	78	3	113	28	26	18	26	1.98
42624456--42624480	13	1.9	13	100	0	50	40	24	4	32	1.73
42647492--42647598	42	2.5	42	89	0	160	20	34	23	21	1.97
42647635--42647726	43	2.1	43	97	0	175	25	35	23	15	1.94
42654238--42654273	4	9.0	4	100	0	72	25	0	0	75	0.81
42658219--42658509	50	5.8	50	83	1	334	21	28	21	27	1.99
42659990--42660255	40	6.7	40	84	5	324	26	27	21	24	1.99
42659990--42660255	120	2.2	122	85	4	362	26	27	21	24	1.99
42661383--42661502	56	2.1	56	98	0	231	22	23	9	45	1.81
42662641--42662760	56	2.1	56	98	0	231	45	9	23	22	1.81
42663888--42664073	40	4.7	40	84	7	227	23	21	29	26	1.99
42663888--42664106	80	2.7	79	80	8	196	24	20	28	26	1.99
42670334--42670453	56	2.1	56	98	0	231	45	9	23	22	1.81
42684296--42684509	40	5.7	40	77	15	179	25	27	22	24	2.00
42692235--42692459	40	5.7	40	87	5	287	25	27	22	24	2.00
42692235--42692459	119	1.9	120	84	6	305	25	27	22	24	2.00
42693586--42693705	56	2.1	56	98	0	231	22	23	9	45	1.81
42714983--42715161	39	4.5	39	90	3	245	25	27	21	25	1.99
42726629--42726890	39	6.7	40	87	7	319	24	27	21	25	1.99
42726629--42726887	118	2.2	119	83	10	318	24	27	21	26	1.99
42731693--42731732	21	1.9	21	84	0	53	32	25	7	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42732275--42732360	25	3.4	25	68	17	70	25	20	24	29	1.99
42732491--42732524	17	1.9	18	88	5	52	52	11	0	35	1.38
42734197--42734237	21	2.0	21	90	0	64	29	4	0	65	1.13
42734752--42734939	51	3.7	50	78	6	193	32	28	16	22	1.96
42743746--42743930	51	3.7	50	84	5	230	29	25	16	28	1.96
42743844--42743926	26	3.2	26	65	27	68	32	25	12	30	1.92
42752951--42753024	37	2.0	37	94	0	130	36	17	12	33	1.87
42755712--42755748	14	2.6	14	82	0	56	62	2	10	24	1.41
42757686--42757753	28	2.5	26	76	6	73	48	1	30	19	1.58
42757755--42757809	20	2.8	20	89	5	78	38	0	32	29	1.58
42758424--42758471	23	2.2	21	85	7	60	33	6	14	45	1.70
42758958--42759015	30	2.1	26	84	12	71	46	1	1	50	1.22
42760199--42760255	29	2.0	29	92	0	96	42	0	8	49	1.34
42760205--42760255	15	3.5	15	71	15	52	45	0	5	49	1.26
42762974--42763026	23	2.4	22	76	20	56	9	18	1	69	1.25
42765330--42765357	4	7.0	4	100	0	56	75	0	0	25	0.81
42771679--42771727	22	2.2	22	96	0	89	30	32	0	36	1.58
42771701--42771815	52	2.2	52	89	4	171	29	27	0	41	1.62
42771826--42771877	10	5.1	10	81	4	59	28	0	0	71	0.87
42771814--42771877	31	2.1	31	96	0	119	32	0	0	67	0.91
42772959--42772983	7	3.6	7	100	0	50	28	0	12	60	1.32
42773573--42773641	25	2.7	25	86	2	102	46	2	11	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42773637--42773895	47	5.3	47	83	9	338	46	24	0	27	1.58
42773673--42773714	18	2.3	18	95	0	75	47	23	0	28	1.52
42773691--42773905	29	7.2	29	73	16	170	45	26	0	27	1.60
42773644--42773908	76	3.5	76	82	10	378	45	25	0	28	1.59
42773826--42773866	18	2.3	18	91	0	64	51	19	0	29	1.47
42773903--42774149	55	4.3	54	80	14	289	38	10	5	46	1.61
42774012--42774046	18	1.9	18	94	0	61	37	8	2	51	1.47
42774068--42774094	10	2.7	10	100	0	54	40	7	0	51	1.30
42774012--42774157	65	2.2	64	86	6	195	39	8	4	47	1.56
42774133--42774157	10	2.5	10	100	0	50	44	8	0	48	1.32
42777267--42777615	122	2.8	123	92	2	576	32	21	15	30	1.95
42779788--42779812	11	2.3	11	100	0	50	48	0	28	24	1.52
42780412--42780474	5	12.6	5	82	0	81	25	34	0	39	1.56
42780412--42780474	15	4.2	15	89	0	99	25	34	0	39	1.56
42781373--42781823	102	4.4	102	86	1	541	29	25	14	30	1.95
42781373--42781822	51	8.9	51	76	4	358	29	25	14	30	1.95
42784136--42784171	18	1.9	19	88	5	56	33	22	0	44	1.53
42784559--42784649	47	1.9	48	84	6	123	35	21	15	27	1.94
42785698--42785745	5	9.6	5	81	0	60	25	33	0	41	1.55
42785701--42785744	15	2.9	15	86	0	70	25	36	0	38	1.56
42785698--42785749	20	2.6	20	87	0	68	25	32	0	42	1.55
42786652--42787092	51	8.7	51	77	7	326	30	24	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42786652--42787093	102	4.4	102	86	1	559	30	24	14	30	1.94
42786646--42786991	153	2.3	151	79	5	374	31	24	13	30	1.94
42794367--42794407	19	2.0	20	86	9	57	80	7	0	12	0.90
42800110--42800157	23	2.1	23	96	0	87	35	4	22	37	1.74
42800426--42800466	6	6.8	6	100	0	82	85	0	14	0	0.60
42801669--42802308	44	14.5	43	75	6	514	27	16	25	29	1.97
42801669--42802308	132	4.8	130	87	3	755	27	16	25	29	1.97
42802275--42802420	44	3.3	45	67	7	118	31	26	22	19	1.98
42802298--42802436	44	3.2	44	65	8	120	25	31	23	18	1.97
42802296--42802505	88	2.4	88	93	1	350	27	28	24	20	1.99
42802559--42803109	256	2.1	256	91	3	897	28	18	23	29	1.98
42802559--42803109	132	4.2	132	92	4	913	28	18	23	29	1.98
42803350--42803394	19	2.4	19	85	7	56	77	4	0	17	0.92
42806289--42806347	30	2.0	29	84	15	77	59	6	13	20	1.57
42825565--42825694	42	3.1	41	76	9	118	32	13	20	33	1.91
42825575--42825730	43	3.7	42	80	0	159	28	14	21	35	1.93
42825565--42825746	85	2.1	84	78	6	197	31	15	20	31	1.94
42826045--42826091	21	2.3	20	85	3	58	2	44	17	36	1.60
42827089--42827118	15	1.9	16	93	6	53	23	16	0	60	1.36
42828033--42828099	34	1.9	35	93	3	118	32	8	11	46	1.72
42829754--42829988	27	8.6	27	82	1	263	40	22	17	19	1.91
42829754--42829977	82	2.7	82	88	0	333	40	21	17	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42829754--42830016	54	4.8	53	79	6	217	39	22	17	19	1.92
42830048--42830101	24	2.2	24	76	0	63	29	5	20	44	1.74
42830188--42830243	26	2.2	26	86	0	76	10	19	35	33	1.87
42830236--42830386	32	4.8	32	77	4	153	18	21	23	35	1.95
42830231--42830386	63	2.5	64	84	1	206	17	21	24	35	1.95
42830619--42830675	28	2.0	28	93	0	96	21	21	24	33	1.97
42839887--42839947	25	2.4	25	80	0	68	26	16	16	40	1.89
42845366--42845590	40	5.7	40	80	7	235	26	28	21	24	1.99
42845368--42845590	119	1.9	120	80	8	267	26	27	21	24	1.99
42853254--42853476	119	1.9	120	83	6	292	25	27	21	24	1.99
42853233--42853476	40	6.1	40	83	6	282	25	27	21	25	1.99
42854603--42854721	55	2.1	56	96	1	222	22	23	8	45	1.79
42856954--42857019	23	2.9	23	82	10	82	40	28	3	27	1.71
42860020--42860087	22	3.0	23	72	20	79	36	5	11	45	1.65
42860006--42860084	22	3.5	23	72	19	76	35	6	12	45	1.68
42863592--42863692	40	2.5	40	88	1	148	24	21	17	35	1.95
42865179--42865216	19	2.0	19	85	10	51	36	2	2	57	1.26
42869700--42869743	16	2.8	15	83	10	52	47	0	11	40	1.39
42869671--42869742	32	2.3	31	85	9	92	43	0	12	44	1.42
42870486--42870628	40	3.6	39	79	11	155	18	27	19	34	1.95
42870486--42870637	80	1.9	80	83	2	198	19	27	19	34	1.95
42872685--42872974	50	5.7	50	83	2	312	26	22	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42878390--42878479	24	3.8	24	77	5	92	18	15	16	48	1.81
42880655--42880697	19	2.2	20	88	12	63	18	4	2	74	1.10
42885712--42885745	13	2.6	13	86	13	52	73	5	8	11	1.24
42885713--42885747	12	2.8	12	95	4	61	68	5	8	17	1.35
42892364--42892397	12	2.8	12	90	4	50	70	2	5	20	1.21
42904813--42904871	31	2.0	29	83	6	73	54	5	3	37	1.39
42908512--42908554	21	2.0	22	86	4	61	9	25	2	62	1.37
42916809--42916851	17	2.5	17	96	0	77	23	32	20	23	1.98
42925345--42925459	48	2.4	48	89	2	171	50	0	7	41	1.31
42937025--42937124	50	2.0	50	98	0	191	22	17	26	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199