genome.fa.s20.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  190  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55156526--55156572	21	2.2	22	92	7	80	0	25	6	68	1.13
55156699--55156740	7	6.0	7	81	8	50	0	21	0	78	0.75
55156695--55156750	21	2.6	22	86	8	71	0	25	0	75	0.81
55156701--55156753	24	2.2	24	86	6	72	0	26	0	73	0.83
55156695--55156749	17	3.3	17	80	12	53	0	25	0	74	0.82
55156817--55156857	19	2.3	19	84	12	52	0	31	0	68	0.90
55156812--55156859	17	2.8	16	78	12	51	0	31	0	68	0.90
55157091--55157207	30	3.9	30	83	3	139	43	3	23	29	1.70
55157091--55157207	60	2.0	59	84	5	155	43	3	23	29	1.70
55159715--55159747	16	2.1	16	88	5	50	27	0	0	72	0.85
55159961--55160013	26	2.1	26	85	3	72	28	1	1	67	1.11
55167225--55167254	3	10.0	3	100	0	60	33	0	0	66	0.92
55172048--55172090	15	2.7	15	80	20	52	86	6	6	0	0.72
55172048--55172104	26	2.1	27	84	9	73	82	7	10	0	0.84
55174283--55174443	72	2.2	73	91	2	261	32	17	15	34	1.91
55174449--55174700	53	4.7	54	91	3	393	30	14	18	36	1.91
55174449--55174704	107	2.4	109	89	3	403	29	15	18	36	1.91
55174651--55174917	69	3.7	71	80	7	299	27	16	23	32	1.96
55174651--55174917	73	3.7	72	83	6	328	27	16	23	32	1.96
55174745--55175674	404	2.2	411	89	6	1441	26	17	22	34	1.95
55174746--55175674	201	4.5	204	91	4	1358	26	17	22	34	1.95
55175556--55175830	76	3.6	77	87	4	403	28	17	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55175556--55175851	155	1.9	155	93	2	515	28	17	20	33	1.95
55175979--55176231	73	3.5	73	91	3	402	32	16	18	31	1.94
55177918--55177950	3	11.0	3	100	0	66	33	0	0	66	0.92
55182741--55182783	15	2.7	15	80	20	52	86	6	6	0	0.72
55182741--55182797	26	2.1	27	84	9	73	82	7	10	0	0.84
55184975--55185135	72	2.2	73	91	2	261	32	17	15	34	1.91
55185141--55185392	53	4.7	54	91	3	393	30	14	18	36	1.91
55185141--55185396	107	2.4	109	89	3	403	29	15	18	36	1.91
55185343--55185609	69	3.7	71	80	7	299	27	16	23	32	1.96
55185343--55185609	73	3.7	72	83	6	328	27	16	23	32	1.96
55185437--55186367	405	2.2	411	88	6	1425	26	17	22	34	1.95
55185438--55186367	202	4.5	204	91	4	1358	26	17	22	34	1.95
55186249--55186523	76	3.6	77	87	4	403	28	17	19	34	1.94
55186249--55186544	155	1.9	155	93	2	515	28	17	20	33	1.95
55186672--55186925	73	3.5	73	90	3	395	33	16	18	31	1.94
55188612--55188641	3	10.0	3	100	0	60	33	0	0	66	0.92
55192314--55192406	44	2.2	43	81	11	102	48	3	11	36	1.56
55192408--55192458	25	2.1	24	82	10	59	47	3	0	49	1.20
55192799--55192859	29	2.1	29	87	0	86	37	13	4	44	1.65
55193040--55193123	40	2.1	39	82	6	98	30	21	23	23	1.99
55193018--55193416	157	2.6	153	80	3	390	32	18	22	27	1.97
55198198--55198397	43	4.7	43	77	4	165	25	20	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55198877--55198918	20	2.0	21	90	9	68	33	0	4	61	1.17
55200459--55200525	5	13.2	5	86	13	93	40	0	0	59	0.97
55200462--55200517	3	21.0	3	75	23	54	39	0	0	60	0.97
55200535--55200614	40	2.0	41	92	2	135	62	8	27	1	1.32
55201881--55202013	25	5.5	24	89	5	173	16	21	21	40	1.91
55201881--55202014	49	2.8	49	87	6	177	16	20	21	41	1.91
55203937--55204149	116	1.8	117	92	3	367	32	25	15	26	1.96
55204953--55205049	33	2.8	35	72	20	89	50	1	3	45	1.24
55210545--55210597	24	2.1	25	82	10	63	52	7	0	39	1.30
55210956--55211007	25	2.0	27	81	11	63	50	3	5	40	1.45
55212022--55212087	22	3.0	23	73	20	68	43	0	1	54	1.09
55212056--55212101	19	2.3	21	78	10	53	39	0	2	58	1.10
55213262--55213326	31	2.1	31	83	8	80	24	7	20	47	1.76
55217038--55217082	19	2.2	20	85	14	58	33	0	6	60	1.23
55217034--55217083	20	2.4	21	83	9	68	34	0	8	58	1.28
55217592--55217803	106	2.0	103	96	2	388	31	25	8	34	1.85
55222509--55222574	31	2.1	31	83	5	80	42	9	6	42	1.61
55227748--55227845	35	2.9	34	79	11	105	50	0	4	45	1.20
55227773--55227833	24	2.5	23	80	15	61	45	0	4	49	1.23
55228246--55228286	12	3.5	12	81	15	50	73	7	19	0	1.07
55229277--55229362	39	2.3	38	83	4	111	20	17	19	41	1.90
55229304--55229448	45	3.2	45	84	1	175	22	16	17	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55237589--55237631	14	2.9	15	93	6	79	53	0	13	32	1.41
55237589--55237627	7	5.4	7	93	6	69	53	0	12	33	1.39
55242981--55243019	18	2.2	17	86	13	53	33	0	20	46	1.51
55272463--55272517	16	3.7	15	78	14	60	32	3	16	47	1.64
55272456--55272517	29	2.1	29	93	0	106	33	3	16	46	1.63
55274316--55274404	22	4.0	22	86	5	117	29	25	0	44	1.54
55274357--55274455	52	1.9	51	81	8	119	31	30	0	38	1.58
55274409--55274450	22	1.9	22	90	0	66	33	33	0	33	1.58
55274492--55274555	29	2.2	30	85	2	94	37	0	1	60	1.06
55276819--55277777	23	37.3	23	75	19	352	47	22	0	29	1.53
55276849--55277898	28	40.1	26	79	15	944	47	23	0	29	1.53
55276916--55277792	51	17.0	51	86	9	1006	47	22	0	29	1.53
55276937--55277777	23	32.9	23	77	18	692	47	22	0	29	1.53
55277755--55277826	34	2.1	34	92	0	117	45	27	0	26	1.54
55277797--55277898	23	4.2	23	80	11	123	49	22	0	28	1.50
55276819--55277898	51	20.7	50	80	15	659	47	23	0	29	1.53
55281038--55281241	84	2.4	85	98	0	392	32	24	20	23	1.98
55281151--55281430	124	2.3	124	84	4	359	33	23	14	28	1.94
55281750--55281831	30	2.7	31	81	7	87	53	2	3	40	1.32
55281990--55282270	66	4.3	66	84	3	379	43	3	25	27	1.71
55281990--55282270	131	2.1	132	85	4	397	43	3	25	27	1.71
55286100--55286133	10	3.5	10	88	4	52	44	17	8	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55300463--55300665	85	2.4	84	97	1	381	32	24	20	22	1.98
55300576--55300838	124	2.1	123	84	4	343	32	23	14	29	1.94
55301382--55301662	66	4.3	66	84	3	379	43	3	25	27	1.71
55301382--55301662	131	2.1	132	85	4	397	43	3	25	27	1.71
55305483--55305516	10	3.5	10	88	4	52	44	17	8	29	1.79
55311973--55312002	14	2.1	14	93	0	51	16	6	6	70	1.31
55312011--55312060	19	2.6	19	90	3	73	18	8	6	68	1.36
55312875--55312915	21	1.9	22	85	5	57	36	2	4	56	1.34
55313032--55313062	5	6.2	5	100	0	62	41	19	19	19	1.90
55316412--55316475	31	2.1	31	88	2	94	39	1	1	57	1.17
55316726--55316804	25	3.2	25	72	16	65	34	0	1	64	1.02
55323676--55324014	171	2.0	171	99	0	669	39	17	15	26	1.91
55328704--55328732	15	1.9	15	100	0	58	20	6	31	41	1.79
55329368--55329416	19	2.5	20	83	9	57	48	22	2	26	1.61
55329387--55329438	13	4.0	13	77	5	52	51	25	0	23	1.48
55329532--55329678	22	6.9	22	74	13	83	46	25	0	27	1.53
55329549--55330192	7	88.4	7	67	15	184	46	25	0	26	1.59
55329549--55329730	22	8.4	22	75	16	123	48	25	0	25	1.55
55329655--55329738	38	2.3	37	81	4	98	50	26	1	22	1.57
55329683--55329760	22	3.5	22	78	5	61	51	25	0	23	1.49
55329863--55329922	29	2.1	28	84	3	75	50	23	0	26	1.50
55329956--55330102	43	3.4	42	82	9	154	46	25	0	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55329977--55330154	29	6.1	29	70	14	100	47	23	1	28	1.59
55330007--55330102	22	4.5	21	83	11	88	47	25	1	26	1.58
55329847--55330102	65	4.0	63	74	10	196	46	25	1	27	1.60
55329998--55330132	43	3.1	42	82	9	155	46	24	1	27	1.61
55329549--55330264	14	49.2	14	66	18	159	46	24	0	27	1.58
55330189--55330228	21	1.9	21	89	0	62	47	22	0	30	1.52
55330218--55330328	37	3.0	36	76	7	100	50	18	0	29	1.53
55330238--55330387	44	3.5	42	76	9	133	50	19	1	28	1.56
55330248--55330364	35	3.3	36	78	8	105	51	20	0	27	1.53
55330354--55330537	34	5.3	35	71	13	130	51	23	1	22	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199