Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  135  of  199  ( 23844 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39428163--39428187
13
1.9
13
100
0
50
36
16
32
16
1.90
39431425--39431458
18
1.9
18
88
5
52
8
35
2
52
1.47
39431541--39431572
15
2.1
16
94
5
57
6
21
0
71
1.07
39432514--39432553
18
2.3
18
86
4
55
7
12
7
72
1.27
39432531--39432618
12
6.7
12
74
21
54
14
7
3
73
1.19
39432557--39432609
14
3.6
14
76
18
54
16
5
3
73
1.17
39432528--39432618
42
2.2
40
81
13
105
14
7
3
74
1.16
39435829--39436325
246
2.0
246
99
0
985
12
24
6
56
1.60
39438189--39438213
13
1.9
13
100
0
50
36
16
32
16
1.90
39439963--39440009
20
2.3
20
85
0
67
21
12
36
29
1.91
39449574--39449676
30
3.5
30
74
1
109
32
15
25
27
1.96
39451848--39451878
12
2.6
12
100
0
62
25
16
12
45
1.83
39451939--39451988
6
8.2
6
81
16
50
2
20
2
76
0.99
39451928--39451998
37
1.9
37
86
11
101
2
18
2
76
1.04
39451924--39451984
16
3.8
16
77
14
63
3
19
1
75
1.03
39452911--39452960
11
4.9
10
79
13
57
8
10
4
78
1.09
39452910--39452962
10
5.2
10
81
4
61
9
9
7
73
1.25
39453046--39453070
11
2.3
11
100
0
50
8
0
8
84
0.79
39454674--39454770
30
3.2
30
75
2
106
28
15
26
28
1.96
39459435--39459524
12
6.6
13
76
16
60
74
5
7
12
1.21
39459435--39459510
13
5.5
13
73
15
55
76
3
6
13
1.12
39459445--39459525
13
5.6
14
78
17
78
74
4
8
12
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39459445--39459566
33
4.1
26
75
21
91
71
4
11
12
1.29
39459487--39459543
17
3.7
16
80
19
68
73
7
14
5
1.21
39459435--39459526
43
2.2
42
84
9
116
75
5
7
11
1.19
39465087--39465138
27
1.9
27
96
0
95
21
19
15
44
1.87
39467200--39467233
18
1.9
18
88
5
52
23
20
0
55
1.43
39467191--39467257
29
2.4
28
82
9
84
13
19
0
67
1.23
39468629--39468681
6
8.8
6
75
8
54
5
15
3
75
1.13
39468622--39468680
18
3.3
17
80
15
66
6
15
5
72
1.23
39471274--39471391
55
2.1
55
84
6
159
25
22
13
38
1.90
39472022--39472069
20
2.4
19
89
6
69
31
14
27
27
1.95
39473539--39473577
15
2.4
15
87
12
51
10
20
2
66
1.33
39474572--39474605
11
2.8
13
91
8
54
17
2
2
76
1.04
39474573--39474615
11
3.8
11
81
6
50
11
6
2
79
1.02
39477162--39477279
55
2.1
55
84
6
159
25
22
13
38
1.90
39477910--39477957
20
2.4
19
89
6
69
31
14
27
27
1.95
39480464--39480497
11
2.8
13
91
8
54
17
2
2
76
1.04
39480465--39480507
11
3.8
11
81
6
50
11
6
2
79
1.02
39483054--39483171
55
2.1
55
84
6
159
25
22
13
38
1.90
39483794--39483848
20
2.8
20
88
0
83
29
16
29
25
1.97
39485132--39485172
15
2.7
16
74
11
50
7
26
0
65
1.18
39486368--39486414
12
3.8
12
94
5
85
17
0
6
76
0.98
39486370--39486414
13
3.5
13
96
3
83
13
0
6
80
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39486370--39486424
25
2.3
25
87
6
78
10
3
5
80
1.01
39487469--39487586
55
2.1
55
84
6
159
25
22
13
38
1.90
39488193--39488264
20
3.7
20
83
1
92
31
15
27
25
1.95
39490033--39490070
10
3.8
10
83
13
51
28
31
18
21
1.97
39490032--39490069
20
1.9
20
94
0
67
28
34
18
18
1.95
39490033--39490093
20
3.0
20
83
9
63
29
27
14
27
1.95
39490043--39490089
10
4.6
10
80
15
51
31
27
14
25
1.95
39490576--39490600
13
1.9
13
100
0
50
16
32
16
36
1.90
39491660--39491717
12
4.7
12
74
14
55
70
3
8
17
1.26
39491651--39491730
38
2.2
35
82
10
90
71
5
10
13
1.29
39491660--39491716
27
2.1
27
83
0
69
71
3
8
15
1.24
39491697--39491775
30
2.7
29
84
7
97
69
5
13
11
1.33
39491705--39491775
15
4.8
15
80
16
76
66
5
15
12
1.42
39492695--39492736
18
2.3
18
87
0
57
71
4
16
7
1.26
39492764--39492828
33
1.9
34
81
12
80
58
1
30
9
1.39
39494431--39494468
10
3.8
10
83
13
51
28
31
18
21
1.97
39494430--39494467
20
1.9
20
94
0
67
28
34
18
18
1.95
39494431--39494491
20
3.0
20
83
9
63
29
27
14
27
1.95
39494441--39494487
10
4.6
10
80
15
51
31
27
14
25
1.95
39494974--39494998
13
1.9
13
100
0
50
16
32
16
36
1.90
39497705--39497757
23
2.4
22
76
20
56
9
18
1
69
1.25
39501690--39501743
10
5.7
10
72
10
51
7
9
5
77
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39501680--39501723
20
2.2
20
83
0
52
11
6
6
75
1.20
39507642--39507684
11
3.7
11
93
6
68
74
2
9
13
1.16
39510745--39510784
12
3.6
11
86
6
55
75
5
5
15
1.15
39510744--39510787
11
3.8
12
91
8
74
72
4
4
18
1.19
39510741--39510787
23
2.1
22
96
4
85
68
6
4
21
1.30
39510827--39510858
14
2.3
14
94
0
55
65
6
9
18
1.42
39512385--39512431
20
2.3
20
85
0
67
29
36
12
21
1.91
39515035--39515140
48
2.2
47
85
9
135
59
1
24
14
1.45
39518272--39518334
20
3.2
20
70
18
51
23
20
15
39
1.91
39521075--39521212
6
22.7
6
67
7
64
70
2
17
9
1.27
39521096--39521212
18
6.7
18
74
12
73
69
1
18
10
1.26
39521143--39521230
30
3.1
27
80
12
97
69
1
18
11
1.24
39521045--39521230
57
3.4
52
75
13
169
68
2
18
10
1.30
39524259--39524284
13
2.0
13
100
0
52
69
7
7
15
1.35
39526517--39526558
17
2.4
18
80
7
52
57
4
23
14
1.56
39532015--39532122
6
17.7
6
69
10
67
72
3
17
6
1.21
39532083--39532120
13
2.8
13
82
17
51
73
0
18
7
1.06
39532126--39532157
12
2.7
12
95
0
55
59
0
21
18
1.38
39542998--39543052
11
4.7
11
86
8
74
16
7
1
74
1.12
39542994--39543053
23
2.5
24
91
5
95
18
8
1
71
1.19
39542994--39543053
12
5.0
12
84
8
86
18
8
1
71
1.19
39555811--39555835
13
1.9
13
100
0
50
36
16
32
16
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39556838--39556868
12
2.6
12
100
0
62
12
6
0
80
0.89
39560818--39560874
20
2.9
20
78
2
62
24
15
29
29
1.96
39562494--39562599
48
2.2
48
85
9
137
14
24
1
59
1.45
39564383--39564407
13
1.9
13
100
0
50
36
16
32
16
1.90
39566641--39566702
14
4.5
13
79
16
72
75
4
4
14
1.13
39566641--39566675
13
2.7
13
86
0
52
80
5
2
11
1.00
39566641--39566714
12
5.6
12
79
14
58
75
4
6
13
1.14
39566652--39566715
24
2.4
24
85
15
74
73
3
7
15
1.19
39566694--39566768
29
2.6
29
78
15
82
70
6
13
9
1.32
39567674--39567705
15
2.1
16
94
5
57
71
0
21
6
1.07
39567788--39567821
18
1.9
18
88
5
52
52
2
35
8
1.47
39572526--39572613
15
6.6
12
75
16
59
12
7
5
73
1.22
39572540--39572606
13
4.9
14
69
18
52
16
7
4
71
1.25
39572526--39572613
12
6.5
14
74
20
73
12
7
5
73
1.22
39573665--39573689
13
1.9
13
100
0
50
36
16
32
16
1.90
39576098--39576154
20
2.9
20
78
2
62
24
15
29
29
1.96
39582582--39582628
20
2.3
20
85
0
67
21
12
36
29
1.91
39584175--39584280
48
2.2
48
81
9
128
14
23
1
60
1.44
39586870--39586916
20
2.3
20
85
0
67
21
12
36
29
1.91
39587558--39587611
15
3.5
15
87
7
81
18
11
5
64
1.44
39587651--39587700
12
4.2
12
85
10
75
22
2
6
70
1.20
39587653--39587697
13
3.6
13
85
8
58
15
2
4
77
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39587654--39587683
11
2.7
11
100
0
60
13
0
6
80
0.91
39593745--39593791
23
2.1
23
84
7
62
51
12
4
31
1.59
39599120--39599174
15
3.4
16
90
10
85
20
10
5
63
1.46
39599219--39599263
11
4.0
11
94
5
81
17
0
8
73
1.08
39599218--39599260
12
3.7
12
93
6
79
13
0
6
79
0.93
39599218--39599263
23
2.0
23
100
0
92
17
0
8
73
1.07
39600250--39600296
23
2.1
23
84
7
62
51
12
4
31
1.59
39600839--39600893
29
2.0
27
82
13
67
60
10
14
14
1.60
39603085--39603131
20
2.3
20
85
0
67
21
12
36
29
1.91
39607843--39607876
17
2.0
17
94
0
59
14
8
0
76
1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199