genome.fa.s20.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  167  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49088022--49088077	19	2.7	22	70	16	55	16	5	17	60	1.53
49088785--49088836	25	2.1	25	85	7	70	46	0	0	53	1.00
49090440--49090472	14	2.3	15	89	5	50	24	3	6	66	1.28
49091734--49091813	37	2.2	37	93	0	133	43	6	13	36	1.70
49094278--49094311	12	3.1	11	91	8	52	82	8	0	8	0.85
49108675--49108704	13	2.4	13	94	5	53	70	3	0	26	1.03
49115347--49115384	17	2.2	17	86	9	51	60	0	7	31	1.25
49115519--49115566	3	16.0	3	100	0	96	66	0	0	33	0.92
49124209--49124406	82	2.4	82	92	0	317	27	6	15	51	1.68
49126431--49126472	17	2.5	17	84	0	57	30	0	4	64	1.14
49126440--49126478	17	2.2	18	86	9	53	28	2	2	66	1.18
49127523--49127584	3	19.7	3	74	9	52	69	1	4	24	1.17
49129358--49129527	51	3.5	50	76	12	190	31	15	18	35	1.92
49129239--49129559	96	3.4	96	80	4	312	28	17	18	35	1.94
49129478--49130390	44	20.0	44	71	10	501	29	19	16	34	1.94
49129813--49129988	93	1.9	90	80	10	205	29	19	16	34	1.94
49129478--49130390	89	10.0	89	71	12	449	29	19	16	34	1.94
49130002--49130390	140	2.9	134	80	7	421	31	20	15	32	1.94
49137063--49137115	26	2.0	27	79	17	67	73	1	3	20	1.08
49137191--49137240	4	12.5	4	86	0	73	70	2	4	24	1.15
49139444--49139479	17	2.1	17	89	0	54	27	2	5	63	1.30
49145738--49145777	19	2.1	19	86	9	55	40	0	7	52	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49146915--49146951	15	2.4	17	82	17	53	48	0	16	35	1.46
49151289--49151323	15	2.2	16	90	5	54	5	11	0	82	0.82
49151885--49151946	3	20.3	3	75	21	58	30	1	3	64	1.19
49152122--49152186	7	9.1	7	71	15	53	29	3	0	67	1.05
49152096--49152163	33	2.0	34	83	8	86	33	5	0	60	1.21
49152144--49152186	12	3.5	12	87	3	50	30	0	0	69	0.88
49153374--49153411	15	2.5	15	95	0	67	42	21	15	21	1.89
49156580--49156615	18	1.9	18	88	5	54	58	2	0	38	1.13
49156692--49156717	9	2.9	9	100	0	52	42	0	0	57	0.98
49158036--49158062	13	2.1	13	100	0	54	22	7	14	55	1.64
49160200--49160237	16	2.4	16	95	0	67	36	2	34	26	1.71
49160219--49160312	44	2.1	46	86	7	131	29	5	28	36	1.79
49160451--49160565	26	4.3	26	68	8	86	52	3	0	43	1.24
49160471--49160587	18	7.0	17	64	26	54	55	2	0	41	1.19
49160447--49160574	41	3.1	41	70	21	122	53	3	0	42	1.22
49163160--49163264	51	2.1	50	90	1	165	41	20	10	27	1.84
49164608--49164698	44	2.0	45	83	6	114	37	4	23	35	1.75
49165781--49165827	15	3.3	15	82	11	55	53	2	0	44	1.12
49165663--49166076	120	3.5	120	89	2	638	48	6	2	42	1.42
49166058--49166312	47	5.6	46	70	19	176	47	2	3	46	1.32
49166139--49166177	18	2.3	17	83	12	53	51	2	0	46	1.14
49166092--49166337	91	2.7	91	96	0	440	47	2	2	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49166481--49166521	20	2.0	22	90	9	68	43	0	0	56	0.99
49166577--49166622	20	2.2	22	88	7	69	45	0	0	54	0.99
49173180--49173211	13	2.5	13	100	0	64	31	31	6	31	1.82
49178734--49178789	19	2.9	19	86	0	67	28	5	17	48	1.69
49178757--49178794	19	2.0	19	100	0	76	26	5	26	42	1.76
49178805--49178843	19	2.1	19	90	0	60	30	7	10	51	1.64
49178946--49178982	10	3.8	10	92	7	67	24	0	21	54	1.45
49178946--49178982	19	1.9	19	100	0	74	24	0	21	54	1.45
49178960--49179079	64	1.9	64	91	3	197	26	4	20	48	1.68
49181664--49181875	102	2.1	103	95	2	383	49	8	3	39	1.50
49190935--49190987	19	2.8	18	75	18	54	41	0	13	45	1.43
49193073--49193114	17	2.5	17	77	14	50	76	2	0	21	0.90
49196668--49196736	30	2.3	30	90	5	104	34	21	20	23	1.96
49197110--49197323	53	4.1	52	81	7	209	24	20	14	40	1.90
49197144--49197323	53	3.4	53	83	5	222	24	18	15	41	1.89
49197909--49197974	27	2.4	26	78	9	69	27	25	22	24	2.00
49198337--49198614	27	10.3	27	83	5	294	18	19	18	43	1.88
49198338--49198614	81	3.4	81	84	4	337	18	19	18	44	1.88
49199968--49200061	48	2.0	48	89	4	145	40	26	13	19	1.89
49202477--49202570	48	2.0	48	85	8	129	40	26	13	19	1.89
49204668--49204865	54	3.6	54	76	8	168	30	25	29	14	1.95
49208110--49208134	9	2.8	9	100	0	50	24	0	8	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49218176--49218411	50	4.6	50	82	3	256	24	30	19	26	1.98
49231293--49231335	18	2.4	17	81	11	50	74	9	4	11	1.20
49232006--49232049	22	2.0	22	95	0	79	29	27	4	38	1.76
49235349--49235452	41	2.5	41	85	0	127	29	22	20	27	1.98
49235701--49235754	12	4.2	12	73	13	54	44	7	3	44	1.49
49240810--49240852	15	2.6	16	82	14	52	60	0	9	30	1.28
49241093--49241121	14	2.0	15	93	6	51	27	20	20	31	1.98
49242920--49243399	238	2.0	238	90	1	766	34	13	15	36	1.87
49243671--49243723	21	2.5	20	79	11	61	41	0	15	43	1.46
49248031--49248070	19	2.1	19	95	0	71	37	20	17	25	1.94
49252242--49252438	25	7.8	25	71	11	109	34	5	5	55	1.45
49252325--49252386	30	2.1	29	84	3	79	33	4	3	58	1.36
49252592--49252639	16	3.1	15	90	6	69	31	2	2	64	1.16
49252592--49252643	8	6.5	8	82	8	61	30	1	1	65	1.14
49254206--49254241	12	3.0	12	95	0	63	27	25	5	41	1.77
49262524--49262697	69	2.5	70	84	5	203	29	14	22	32	1.94
49262715--49263056	72	4.5	75	85	6	440	33	15	19	31	1.93
49262945--49263188	132	1.8	131	87	4	364	29	15	21	32	1.95
49263429--49263456	14	2.0	14	100	0	56	14	21	7	57	1.61
49263443--49263728	72	3.8	76	82	8	352	31	15	19	33	1.93
49263443--49263748	78	4.0	77	78	10	333	31	15	19	34	1.93
49264016--49264050	14	2.5	14	90	0	52	17	14	5	62	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49263873--49264121	91	2.8	90	83	6	310	27	16	21	34	1.95
49264051--49264237	74	2.5	75	96	2	344	32	17	22	27	1.97
49264108--49264439	165	2.0	161	88	3	495	28	17	20	33	1.95
49264292--49264514	73	3.0	72	84	3	277	27	17	21	33	1.96
49264665--49265007	72	4.5	74	84	7	404	32	15	19	32	1.93
49265030--49265593	227	2.5	220	81	9	636	30	16	20	33	1.94
49265030--49265613	72	7.7	77	77	7	570	29	16	19	34	1.94
49265881--49265915	14	2.5	14	95	0	61	17	17	5	60	1.55
49265738--49265986	91	2.8	90	81	5	290	27	17	20	34	1.95
49265896--49266102	74	2.8	74	91	4	328	30	16	20	31	1.95
49265973--49266268	164	1.8	163	90	2	477	28	16	20	34	1.94
49266047--49266230	89	2.1	87	84	8	237	27	16	18	38	1.92
49266513--49267513	226	4.5	222	78	11	961	31	15	19	32	1.94
49266499--49266836	148	2.2	147	84	7	419	33	15	18	33	1.92
49266513--49266853	76	4.5	75	86	5	447	33	15	19	31	1.93
49266516--49269105	359	6.9	363	76	15	1452	29	16	20	33	1.95
49266741--49267429	149	4.8	137	81	10	496	31	15	20	32	1.94
49266876--49267513	72	8.5	74	81	7	664	31	15	20	32	1.94
49267801--49267835	14	2.5	14	95	0	61	17	17	5	60	1.55
49267658--49267906	88	2.8	90	84	5	308	26	17	21	34	1.95
49268041--49268069	14	2.1	14	100	0	58	13	13	6	65	1.45
49267967--49268150	89	2.1	87	85	8	246	26	16	19	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49268076--49268985	73	12.0	73	78	10	902	28	17	21	32	1.96
49268503--49268529	14	1.9	14	100	0	54	14	14	7	62	1.51
49268278--49269112	238	3.6	238	89	5	1299	28	17	21	33	1.96
49267815--49269112	462	2.8	461	94	1	2203	28	17	21	32	1.96
49268965--49268999	14	2.5	14	85	0	52	20	17	2	60	1.49
49268892--49269065	89	2.0	88	87	4	251	26	19	17	36	1.94
49268981--49269127	73	2.0	74	83	5	188	27	17	22	31	1.97
49269128--49269178	14	3.6	14	86	5	57	23	13	0	62	1.31
49269129--49269175	15	3.3	15	85	5	62	21	10	0	68	1.20
49269300--49269642	72	4.5	76	87	5	437	32	15	20	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199