genome.fa.s20.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  58  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16847249--16847297	21	2.3	21	89	0	71	2	46	18	32	1.60
16847184--16847345	87	1.9	87	86	1	225	12	30	17	38	1.87
16848614--16848683	9	8.0	9	80	6	81	30	0	18	51	1.47
16848614--16848684	27	2.7	27	89	4	101	29	0	18	52	1.46
16848626--16848702	27	3.0	25	81	9	59	31	0	15	53	1.43
16848671--16848858	31	6.6	29	67	23	98	32	1	13	52	1.50
16848787--16848865	12	7.4	11	70	17	51	34	0	12	53	1.39
16848775--16848858	32	2.7	31	83	8	116	34	0	13	52	1.40
16848833--16848915	9	8.8	9	70	19	62	36	2	16	44	1.61
16848948--16849067	62	1.9	62	91	0	195	50	8	5	35	1.56
16849010--16849047	16	2.4	16	91	4	60	52	5	0	42	1.24
16849057--16849089	17	1.9	17	100	0	66	51	6	6	36	1.51
16848929--16849136	62	3.5	57	76	13	152	50	8	5	36	1.55
16853296--16853350	20	2.7	21	74	2	58	38	34	3	23	1.73
16853720--16854130	133	3.1	133	82	6	510	31	21	14	31	1.94
16862603--16862680	27	2.8	28	75	11	72	66	2	5	25	1.25
16863553--16863640	39	2.3	39	86	4	124	42	1	3	53	1.25
16867859--16867926	25	2.7	25	81	4	75	29	19	32	19	1.96
16883281--16883509	46	5.0	46	91	1	352	27	26	8	36	1.86
16892789--16892832	22	2.0	23	86	4	63	50	2	0	47	1.13
16895852--16896084	33	6.7	33	69	21	129	32	27	19	20	1.97
16895961--16896013	26	2.0	26	100	0	106	26	33	22	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16895886--16896087	100	2.0	101	91	0	325	32	27	18	20	1.96
16897153--16897186	11	2.8	12	91	8	52	35	8	11	44	1.72
16897217--16897369	76	2.0	76	96	0	279	24	22	19	33	1.97
16912818--16913052	44	5.3	44	72	9	165	30	20	22	27	1.98
16912958--16913363	177	2.3	177	88	2	591	31	17	19	30	1.96
16913261--16913364	41	2.6	39	79	10	102	28	20	18	32	1.96
16937462--16937494	6	5.5	6	100	0	66	15	33	0	51	1.43
16945792--16945837	20	2.5	18	86	10	58	41	17	8	32	1.80
16945792--16945830	21	1.9	20	84	5	51	43	12	7	35	1.72
16947422--16947447	3	8.7	3	100	0	52	0	30	0	69	0.89
16949441--16949491	10	5.1	10	84	13	61	39	1	1	56	1.22
16949411--16949488	40	1.9	40	82	12	97	39	3	1	55	1.26
16949405--16949492	10	8.6	10	76	15	58	38	3	1	56	1.23
16949590--16949689	53	1.9	53	89	4	159	33	6	4	57	1.42
16949631--16949674	20	2.2	20	84	8	54	34	6	0	59	1.24
16950786--16950818	17	1.9	17	88	11	50	24	0	3	72	0.98
16956163--16956190	5	5.6	5	100	0	56	42	0	0	57	0.99
16957062--16957088	12	2.2	12	100	0	54	33	22	25	18	1.97
16957139--16957245	25	4.4	25	83	3	112	18	25	20	35	1.95
16957154--16957269	22	5.0	22	76	13	83	17	24	19	38	1.93
16965120--16965171	9	5.8	9	85	14	72	82	7	0	9	0.84
16965119--16965163	20	2.2	20	100	0	90	82	8	0	8	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16965120--16965206	29	3.0	29	79	14	99	80	6	2	10	0.98
16965118--16965191	9	8.0	9	76	16	71	82	6	1	9	0.90
16965129--16965192	20	3.2	20	87	10	80	84	6	1	7	0.84
16965200--16965244	21	2.1	21	91	0	72	80	0	17	2	0.82
16965212--16965248	15	2.6	15	83	8	51	81	0	18	0	0.70
16966057--16966097	17	2.3	18	91	8	66	75	0	12	12	1.05
16967307--16968603	88	14.7	88	93	0	2081	27	22	24	25	2.00
16968630--16968789	46	3.5	46	87	0	221	27	15	25	32	1.95
16968826--16969036	44	4.8	44	70	11	153	30	18	26	25	1.98
16968757--16969162	132	3.1	132	93	0	668	30	18	25	26	1.98
16978644--16978736	44	2.1	46	82	8	111	36	22	6	34	1.80
16978726--16978784	16	3.7	16	93	0	100	30	30	0	38	1.57
16978718--16978784	32	2.1	32	88	5	100	32	28	1	37	1.66
16982596--16982653	29	2.0	29	82	0	71	51	8	17	22	1.72
16985127--16985197	37	1.9	37	97	0	133	49	0	9	40	1.36
16985127--16985201	18	4.1	19	83	6	102	52	0	9	38	1.34
16985275--16985360	27	3.2	26	85	4	102	19	26	23	30	1.98
16985394--16985476	29	2.9	29	89	10	136	51	0	9	38	1.35
16985394--16985489	27	3.5	26	90	5	129	47	0	10	41	1.37
16993770--16993809	21	1.9	21	100	0	80	40	20	0	40	1.52
16994372--16994399	14	2.0	14	100	0	56	21	57	7	14	1.61
17001509--17001895	109	3.6	109	92	0	549	34	19	15	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17002545--17002585	3	13.3	3	84	5	55	58	0	2	39	1.11
17002545--17002585	16	2.6	16	88	3	57	58	0	2	39	1.11
17004129--17004184	22	2.5	23	82	2	69	51	1	1	44	1.22
17004160--17004199	16	2.5	16	91	0	62	47	2	7	42	1.45
17004272--17004299	9	3.1	9	100	0	56	32	0	10	57	1.33
17004188--17004397	68	3.1	68	95	1	370	40	4	8	46	1.56
17004340--17004367	9	3.1	9	100	0	56	32	0	10	57	1.33
17010341--17010431	34	2.7	33	81	10	94	31	17	15	35	1.91
17010453--17010509	15	3.8	15	72	9	53	33	22	10	33	1.88
17010444--17010524	30	2.7	30	80	3	83	30	19	13	35	1.91
17010563--17010657	15	6.4	15	80	2	93	27	21	23	28	1.99
17010560--17010648	44	2.0	44	84	4	117	26	21	23	28	1.99
17012843--17012884	17	2.5	17	80	0	57	54	2	0	42	1.13
17013171--17013203	16	1.9	18	88	11	52	33	15	12	39	1.84
17016559--17016712	24	6.3	24	74	7	114	33	20	27	18	1.96
17020593--17020635	21	2.2	19	83	8	50	30	9	4	55	1.52
17021818--17021881	7	8.6	7	86	11	83	29	0	0	70	0.88
17022720--17022750	3	10.3	3	100	0	62	64	0	0	35	0.94
17025146--17025208	22	2.9	22	80	0	72	17	25	15	41	1.89
17025405--17025437	16	2.1	16	100	0	66	39	0	18	42	1.50
17033475--17033551	25	3.1	24	77	7	82	18	22	18	41	1.90
17035197--17035340	50	2.7	52	78	8	141	26	20	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17042435--17042474	20	2.0	20	85	0	53	17	10	20	52	1.72
17045776--17045823	24	2.0	25	83	4	62	52	2	4	41	1.32
17045776--17045823	25	2.0	24	83	4	60	52	2	4	41	1.32
17046970--17047004	17	1.9	19	88	11	56	14	17	5	62	1.49
17046970--17047003	18	1.9	17	88	5	50	14	17	5	61	1.52
17047879--17047919	21	2.0	21	85	0	55	29	12	29	29	1.93
17051139--17051172	16	2.1	16	88	0	50	64	0	0	35	0.94
17055656--17055722	34	1.9	35	87	3	100	32	8	11	46	1.72
17057388--17057434	13	3.6	13	85	8	60	31	0	31	36	1.58
17057390--17057430	19	2.2	19	90	0	64	34	0	29	36	1.58
17057390--17057430	6	6.5	6	83	10	55	34	0	29	36	1.58
17061878--17061903	13	2.0	13	100	0	52	23	0	23	53	1.46
17062481--17062577	27	3.6	27	82	0	122	36	27	22	13	1.92
17067423--17067455	11	2.8	12	86	9	50	48	3	0	48	1.17
17069915--17069948	18	1.9	18	88	5	52	38	5	0	55	1.24
17075001--17075043	7	5.3	9	83	16	51	79	9	0	11	0.95
17074993--17075043	15	3.4	14	84	15	66	76	9	1	11	1.10
17075003--17075054	21	2.4	21	90	6	77	75	9	1	13	1.14
17075001--17075043	16	2.8	15	83	16	61	79	9	0	11	0.95
17075056--17075093	6	6.2	6	82	17	51	81	0	18	0	0.69
17075056--17075093	11	3.1	12	85	14	51	81	0	18	0	0.69
17077160--17077311	48	3.1	48	71	7	153	31	26	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17077152--17077494	98	3.5	98	88	0	497	33	24	18	23	1.97
17077186--17077338	48	3.1	47	69	7	126	33	24	18	22	1.97
17077152--17077492	50	6.9	50	67	9	205	33	24	19	22	1.97
17077472--17077518	23	2.0	23	95	0	85	40	21	21	17	1.91
17077504--17077671	48	3.5	47	71	9	140	35	23	17	23	1.95
17077373--17077616	121	2.0	122	86	3	339	34	24	18	22	1.96
17077550--17077723	50	3.5	50	71	6	165	33	20	20	25	1.97
17077495--17077707	98	2.2	98	89	0	318	34	21	20	23	1.97
17078113--17078160	23	2.1	23	84	0	60	41	35	4	18	1.70
17079401--17079434	18	1.9	18	88	5	52	38	5	0	55	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199