genome.fa.s20.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  120  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34209513--34209542	14	2.1	14	93	0	51	46	13	0	40	1.43
34210382--34210415	17	2.0	17	94	0	59	17	32	35	14	1.91
34214852--34214893	21	2.0	21	81	9	50	52	2	11	33	1.51
34218673--34218746	24	3.0	25	84	5	98	43	5	29	21	1.75
34226403--34226470	24	2.8	24	90	2	100	41	5	30	22	1.77
34228889--34228936	23	2.1	23	84	0	60	27	14	14	43	1.84
34231075--34231140	29	2.3	28	86	2	87	45	15	6	33	1.70
34240571--34240604	10	3.5	10	84	8	52	11	8	32	47	1.71
34240573--34240613	19	2.2	19	95	0	73	12	7	34	46	1.69
34240573--34240620	19	2.5	19	89	0	60	12	6	29	52	1.63
34243479--34243542	14	4.7	14	70	14	53	31	1	14	53	1.50
34243476--34243556	40	2.0	40	97	0	153	33	2	14	49	1.57
34244831--34244868	17	2.2	17	86	9	51	50	5	0	44	1.24
34250216--34250243	10	2.8	10	100	0	56	28	0	0	71	0.86
34250223--34250247	13	1.9	13	100	0	50	28	0	0	72	0.86
34253161--34255460	143	16.1	143	82	4	2516	36	10	15	37	1.82
34255302--34255632	178	1.9	177	86	5	472	36	9	14	39	1.79
34257047--34263319	143	43.1	143	70	11	2117	37	9	15	38	1.79
34257075--34259631	285	8.9	281	74	9	1370	36	9	15	38	1.80
34258157--34258784	229	2.8	218	80	7	641	36	10	15	38	1.81
34257046--34259632	428	6.0	428	73	9	1457	36	9	15	38	1.80
34259572--34259705	66	2.0	66	83	0	169	41	8	18	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34260220--34260380	84	1.9	84	83	2	207	33	11	17	37	1.85
34260077--34260501	227	1.9	227	90	1	681	36	10	16	36	1.84
34260391--34260842	223	2.0	222	87	2	638	40	8	13	36	1.76
34261608--34261780	86	2.0	86	83	4	215	34	10	17	37	1.84
34261693--34263327	141	11.5	141	78	5	1436	37	9	14	38	1.79
34261693--34263327	284	5.7	284	79	5	1559	37	9	14	38	1.79
34263136--34263561	233	1.8	233	87	3	642	35	10	16	38	1.83
34262851--34263847	521	1.9	515	82	4	1218	36	9	15	38	1.80
34263369--34264868	143	10.5	142	77	5	1301	36	9	15	39	1.79
34263377--34264868	285	5.2	282	80	6	1414	36	9	15	39	1.79
34264797--34264954	86	1.8	86	89	5	248	33	9	17	39	1.82
34264653--34265073	229	1.9	225	88	4	648	37	9	16	37	1.80
34264867--34266793	143	13.6	143	77	6	1720	36	9	15	38	1.80
34264867--34266790	426	4.5	427	81	5	1931	36	9	15	38	1.80
34264867--34266485	578	2.8	569	81	5	1568	37	9	15	37	1.80
34266712--34266877	86	1.9	86	90	2	262	37	10	16	35	1.83
34266808--34267328	143	3.7	142	83	2	623	36	10	13	38	1.80
34269825--34269933	50	2.2	50	83	6	132	25	29	25	19	1.98
34272304--34274331	143	14.4	141	76	7	1669	36	9	15	38	1.81
34272335--34274283	283	6.9	284	80	6	1799	36	9	15	38	1.80
34272304--34274309	698	2.8	688	79	7	1649	36	9	15	38	1.80
34276385--34279568	142	22.4	141	78	5	2883	36	9	14	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34276385--34279568	286	11.2	281	78	5	2792	36	9	14	39	1.79
34279967--34280008	22	1.9	22	85	0	57	42	14	19	23	1.87
34280326--34280393	29	2.3	29	84	2	82	38	14	13	33	1.85
34287424--34287449	6	4.3	6	100	0	52	84	0	0	15	0.62
34287693--34287750	15	3.9	14	79	20	64	77	0	3	18	0.91
34287697--34287763	32	2.1	32	91	5	109	76	0	5	17	0.99
34287691--34287763	25	3.1	24	80	19	84	76	0	5	17	0.97
34288090--34288231	64	2.2	64	81	6	164	15	35	19	29	1.93
34302386--34302415	12	2.5	12	94	0	51	0	20	50	30	1.49
34306775--34306813	19	2.1	19	95	0	69	28	10	41	20	1.85
34315732--34318665	142	20.5	143	79	4	2733	36	8	15	39	1.79
34315732--34318665	285	10.3	283	80	6	2775	36	8	15	39	1.79
34317183--34317207	7	3.6	7	100	0	50	28	0	16	56	1.41
34319908--34327785	143	55.7	141	74	8	5260	36	8	15	39	1.79
34319908--34327785	285	27.9	282	76	9	5236	36	8	15	39	1.79
34329557--34329586	15	2.0	15	100	0	60	0	60	6	33	1.23
34334284--34334330	23	2.0	25	84	16	64	61	2	2	34	1.20
34344329--34344571	50	4.7	51	81	8	271	26	21	28	23	1.99
34344819--34344857	12	3.2	12	85	0	51	51	5	23	20	1.67
34344820--34344863	20	2.2	20	87	0	61	52	4	25	18	1.64
34347977--34348004	9	3.1	9	100	0	56	53	0	25	21	1.46
34358115--34358165	20	2.5	20	100	0	102	39	31	13	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34361224--34361551	23	13.8	24	74	7	89	39	17	14	27	1.89
34361225--34361551	72	4.6	70	77	7	271	40	17	14	27	1.89
34361225--34361512	23	12.0	25	70	11	115	40	17	14	28	1.88
34361232--34361551	48	6.7	46	72	7	201	40	17	15	27	1.89
34362386--34362483	42	2.3	43	92	3	164	27	24	8	39	1.83
34371302--34371458	48	3.3	47	85	4	206	33	30	14	21	1.93
34373619--34373668	21	2.5	20	87	6	66	28	4	24	44	1.72
34376585--34376718	27	5.0	27	75	3	119	23	28	14	34	1.93
34376613--34376733	54	2.2	53	86	5	163	23	28	14	33	1.94
34395577--34395619	22	2.0	21	82	13	52	41	0	0	58	0.98
34397111--34397151	18	2.2	19	91	4	66	60	0	0	39	0.96
34403524--34403744	40	5.6	39	80	7	212	26	21	27	24	1.99
34403602--34403779	79	2.2	80	80	3	191	26	21	27	24	1.99
34410529--34410706	40	4.5	39	85	4	198	26	20	27	25	1.99
34410535--34410706	80	2.2	79	85	3	229	25	21	27	25	1.99
34410562--34410739	79	2.2	80	82	3	200	25	21	28	24	1.99
34423599--34423654	20	2.7	21	83	10	62	64	8	5	21	1.42
34424363--34424661	50	5.9	50	81	4	271	27	20	28	23	1.99
34424364--34424609	50	4.8	50	85	3	294	26	20	30	22	1.99
34430643--34430684	20	2.0	22	90	9	70	45	14	0	40	1.45
34432693--34432722	15	2.0	15	93	0	51	46	3	6	43	1.46
34434778--34434829	25	2.1	25	92	0	86	15	26	15	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34436293--34436476	38	4.7	37	68	17	122	42	1	3	51	1.29
34436275--34436633	120	3.0	120	96	0	646	43	1	3	51	1.27
34444695--34444769	17	4.7	16	71	15	66	46	0	1	52	1.09
34448469--34448498	15	2.0	15	93	0	51	63	3	6	26	1.35
34458171--34458276	41	2.6	41	90	0	158	32	23	20	23	1.98
34466035--34466137	41	2.5	41	91	0	170	31	24	21	23	1.99
34470019--34470056	14	2.4	16	87	12	53	42	2	7	47	1.46
34482602--34482727	27	4.7	26	81	6	135	27	17	26	27	1.98
34482601--34482727	54	2.3	54	82	11	152	28	17	26	27	1.98
34485620--34485731	49	2.3	49	90	0	179	23	29	16	30	1.96
34504331--34504480	27	5.6	27	88	2	214	18	18	21	42	1.90
34506799--34506852	25	2.1	26	83	10	67	64	3	3	27	1.27
34508701--34508769	36	1.9	36	90	0	111	37	15	24	21	1.93
34510195--34510228	16	2.2	15	89	5	50	55	2	0	41	1.15
34515074--34515350	40	6.9	40	89	0	374	25	27	21	24	1.99
34515140--34515383	120	2.0	120	88	1	355	26	27	20	25	1.99
34515140--34515429	120	2.4	119	83	4	350	25	26	21	25	2.00
34515743--34515815	29	2.5	29	88	4	103	26	31	16	26	1.96
34515797--34515899	43	2.4	43	100	0	206	26	35	15	22	1.94
34517766--34517845	37	2.2	37	86	0	115	27	31	17	23	1.97
34517963--34518120	49	3.2	48	95	2	273	30	31	7	31	1.85
34518391--34518448	24	2.5	23	81	16	66	32	5	0	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34520477--34520799	144	2.2	144	95	1	585	21	20	16	41	1.90
34522227--34522274	18	2.6	18	75	18	53	70	2	10	16	1.24
34536315--34536904	47	12.5	47	91	1	901	29	29	8	32	1.86
34536315--34536904	143	4.2	141	92	0	946	29	29	8	32	1.86
34565667--34565808	40	3.6	40	77	12	132	25	23	27	23	2.00
34566033--34566200	47	3.6	47	89	0	246	33	8	29	27	1.87
34581996--34582181	40	4.7	40	88	5	252	24	21	26	26	1.99
34582049--34582214	80	2.1	79	85	5	219	26	20	26	26	1.99
34594714--34594763	25	2.0	25	100	0	100	24	48	0	28	1.52
34596770--34596807	18	2.1	18	90	0	58	47	39	2	10	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199