genome.fa.s20.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  141  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41241029--41241251	40	5.6	40	85	2	234	26	27	21	24	1.99
41252689--41252713	1	25.0	1	100	0	50	100	0	0	0	0.00
41253734--41253779	20	2.2	20	88	11	67	67	0	23	8	1.18
41253751--41253791	20	2.0	20	85	0	55	75	0	17	7	1.02
41258469--41258506	10	3.8	10	83	13	51	28	31	18	21	1.97
41258468--41258505	20	1.9	20	94	0	67	28	34	18	18	1.95
41258469--41258529	20	3.0	20	83	9	63	29	27	14	27	1.95
41258479--41258525	10	4.6	10	80	15	51	31	27	14	25	1.95
41259904--41259981	12	5.7	13	75	18	61	73	5	8	12	1.24
41259904--41259982	13	5.6	14	75	23	69	73	5	8	12	1.23
41259895--41259983	41	2.2	40	82	9	110	75	4	7	12	1.17
41259946--41260015	34	2.1	32	84	5	86	72	7	11	8	1.27
41260955--41260996	18	2.3	18	87	0	57	71	4	16	7	1.26
41261024--41261088	33	1.9	34	81	12	80	58	1	30	9	1.39
41262694--41262731	10	3.8	10	83	13	51	28	31	18	21	1.97
41262693--41262730	20	1.9	20	94	0	67	28	34	18	18	1.95
41262694--41262754	20	3.0	20	83	9	63	29	27	14	27	1.95
41262704--41262750	10	4.6	10	80	15	51	31	27	14	25	1.95
41264316--41264365	18	2.5	20	87	9	68	6	18	4	72	1.22
41269778--41269874	30	3.2	30	75	2	106	28	26	15	28	1.96
41272165--41272225	10	6.1	10	74	12	54	32	13	24	29	1.93
41272166--41272226	20	3.0	20	83	9	79	32	13	26	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41274367--41274420	20	2.7	20	82	0	63	24	20	18	37	1.94
41274367--41274440	30	2.5	30	86	8	98	21	20	18	39	1.93
41274367--41274431	20	3.2	20	71	16	53	23	21	16	38	1.93
41276031--41276103	13	5.5	13	79	7	76	75	4	6	13	1.15
41276041--41276103	28	2.2	28	80	0	81	74	3	7	14	1.16
41276081--41276154	28	2.6	28	79	6	87	68	8	13	9	1.38
41276031--41276118	41	2.2	40	84	8	117	73	5	7	12	1.22
41276081--41276154	29	2.6	28	81	6	87	68	8	13	9	1.38
41277056--41277087	15	2.1	16	94	5	57	71	0	21	6	1.07
41277170--41277203	18	1.9	18	88	5	52	52	2	35	8	1.47
41278469--41278522	20	2.7	20	82	0	63	24	20	18	37	1.94
41278469--41278542	30	2.5	30	86	8	98	21	20	18	39	1.93
41278469--41278533	20	3.2	20	71	16	53	23	21	16	38	1.93
41280058--41280113	21	2.7	21	72	5	51	8	17	1	71	1.21
41280057--41280113	14	4.1	14	75	16	57	8	17	1	71	1.19
41280120--41280178	18	3.3	18	80	0	73	5	16	6	71	1.26
41280075--41280182	6	17.7	6	68	5	65	6	19	3	70	1.25
41281253--41281287	11	3.3	11	92	4	54	14	2	8	74	1.17
41282375--41282421	20	2.3	20	85	0	67	29	36	12	21	1.91
41283008--41283061	20	2.7	20	82	0	63	24	20	18	37	1.94
41283008--41283081	30	2.5	30	86	8	98	21	20	18	39	1.93
41283008--41283072	20	3.2	20	71	16	53	23	21	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41285604--41285642	13	2.9	13	85	14	53	71	0	17	10	1.12
41285630--41285664	18	1.9	18	88	11	54	57	0	20	22	1.41
41287338--41287384	20	2.3	20	85	0	67	29	36	12	21	1.91
41287971--41288024	20	2.7	20	82	0	63	24	20	18	37	1.94
41287971--41288044	30	2.5	30	86	8	98	21	20	18	39	1.93
41287971--41288035	20	3.2	20	71	16	53	23	21	16	38	1.93
41292636--41292689	23	2.2	25	78	15	60	62	3	22	11	1.43
41299636--41299682	20	2.3	20	85	0	67	21	12	36	29	1.91
41301198--41301262	20	3.3	19	73	16	51	38	16	21	23	1.93
41301750--41301792	21	2.0	22	90	4	70	34	2	37	25	1.69
41305221--41305273	23	2.4	22	76	20	56	9	18	1	69	1.25
41306910--41306974	20	3.3	19	73	16	51	38	16	21	23	1.93
41314975--41315021	20	2.3	20	81	0	58	29	34	12	23	1.92
41316533--41316587	24	2.3	23	84	3	65	78	5	12	3	1.06
41317614--41317719	48	2.2	47	85	9	135	59	1	24	14	1.45
41319391--41319436	20	2.3	20	80	0	56	30	32	13	23	1.93
41320951--41321008	25	2.3	24	85	5	71	77	3	15	3	1.04
41327011--41327048	20	1.9	20	88	0	58	31	36	13	18	1.89
41328638--41328694	30	1.9	30	82	7	71	42	15	10	31	1.81
41328587--41329239	327	2.0	327	97	0	1236	35	21	18	23	1.95
41329504--41329550	20	2.3	20	85	0	67	29	36	12	21	1.91
41332539--41332563	11	2.3	11	100	0	50	76	8	0	16	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41332556--41332616	29	2.1	29	84	6	79	75	4	14	4	1.14
41335437--41335480	20	2.2	20	91	0	70	31	36	9	22	1.86
41350750--41350812	33	1.9	33	84	12	85	12	25	6	55	1.60
41350829--41350866	14	2.7	15	88	11	55	7	18	0	73	1.06
41350871--41350922	18	2.9	18	79	0	68	7	15	5	71	1.29
41350827--41350922	6	15.7	6	67	6	50	8	18	3	69	1.27
41350904--41350945	22	1.9	22	85	0	57	9	21	2	66	1.32
41351937--41351986	19	2.7	18	78	9	55	2	14	6	78	1.03
41365520--41365544	13	1.9	13	100	0	50	36	16	32	16	1.90
41366050--41366087	10	3.8	10	83	13	51	21	18	31	28	1.97
41366027--41366087	20	3.0	20	83	9	63	27	14	27	29	1.95
41366051--41366088	20	1.9	20	94	0	67	18	18	34	28	1.95
41367392--41367433	21	2.0	22	90	4	68	66	7	9	16	1.42
41370754--41370871	55	2.1	55	83	6	150	25	22	13	38	1.91
41371496--41371550	20	2.8	20	88	0	83	29	16	29	25	1.97
41382425--41382473	17	3.3	15	78	15	57	71	4	6	18	1.23
41382451--41382484	13	2.6	13	90	0	50	82	2	5	8	0.93
41382477--41382519	17	2.6	16	76	20	52	69	11	11	6	1.35
41383565--41383598	18	1.9	18	88	5	52	52	2	35	8	1.47
41387950--41387987	17	2.3	17	95	4	69	21	10	2	65	1.35
41388026--41388064	12	3.2	12	82	7	51	25	2	5	66	1.25
41397086--41397138	11	4.7	11	90	4	79	73	7	3	15	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41397180--41397230	14	3.7	14	92	2	86	60	0	13	25	1.33
41401763--41401819	30	1.9	30	82	7	71	42	15	10	31	1.81
41401712--41403672	327	6.0	327	97	0	3688	35	22	18	22	1.95
41407948--41408012	20	3.3	19	73	16	51	38	16	21	23	1.93
41409278--41409311	18	1.9	18	88	5	52	8	35	2	52	1.47
41409394--41409425	15	2.1	16	94	5	57	6	21	0	71	1.07
41410365--41410406	16	2.6	16	75	14	50	7	11	11	69	1.37
41410363--41410430	27	2.5	27	74	9	75	8	11	8	70	1.34
41411235--41411299	20	3.3	19	73	16	51	38	16	21	23	1.93
41415422--41415453	4	8.0	4	100	0	64	75	0	0	25	0.81
41416806--41416858	23	2.4	22	76	20	56	9	18	1	69	1.25
41421312--41421383	12	5.4	14	71	22	57	75	2	15	6	1.14
41421302--41421380	41	2.0	40	87	7	117	73	5	13	7	1.22
41422397--41422504	6	17.7	6	69	10	67	72	3	17	6	1.21
41422465--41422502	13	2.8	13	82	17	51	73	0	18	7	1.06
41422508--41422539	12	2.7	12	95	0	55	59	0	21	18	1.38
41426725--41427704	327	3.0	327	98	0	1852	35	21	19	23	1.96
41434507--41436446	975	2.0	973	93	1	3343	23	17	16	42	1.89
41438596--41438626	13	2.4	13	94	0	53	80	3	6	9	0.99
41438596--41438638	12	3.5	12	90	3	59	76	2	6	13	1.08
41445197--41445224	9	3.1	9	100	0	56	35	10	21	32	1.88
41447575--41447633	13	4.8	12	87	8	84	76	1	8	13	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41447590--41447632	11	3.7	11	90	9	68	76	0	9	13	1.01
41447577--41447632	23	2.3	23	90	6	85	76	1	7	14	1.07
41448685--41448726	18	2.3	18	87	0	57	71	4	16	7	1.26
41451973--41452040	13	5.2	13	84	12	86	76	4	5	13	1.12
41451973--41452039	12	5.2	12	84	10	71	76	4	5	13	1.13
41453073--41453121	21	2.2	22	85	7	64	71	2	20	6	1.18
41461442--41461514	29	2.5	29	90	0	119	30	9	13	46	1.75
41467861--41467925	20	3.3	19	73	16	51	38	16	21	23	1.93
41469191--41469224	18	1.9	18	88	5	52	8	35	2	52	1.47
41469307--41469338	15	2.1	16	94	5	57	6	21	0	71	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199