genome.fa.s20.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  146  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42946137--42946314	27	6.6	27	77	6	137	30	28	15	25	1.96
42946137--42946314	54	3.3	54	78	7	164	30	28	15	25	1.96
42966570--42966603	12	2.8	12	90	4	50	70	2	5	20	1.21
42968776--42968807	17	1.9	16	93	6	55	59	0	25	15	1.36
42972954--42972987	12	2.8	12	90	4	50	70	2	5	20	1.21
42989027--42989068	21	2.0	21	90	0	66	7	26	2	64	1.32
43009193--43009370	27	6.6	27	77	6	137	30	28	15	25	1.96
43009193--43009370	54	3.3	54	78	7	164	30	28	15	25	1.96
43012574--43012618	22	2.0	22	82	4	54	55	15	11	17	1.68
43015688--43015857	40	4.3	40	88	0	207	24	21	28	25	1.99
43015635--43015857	80	2.8	79	82	3	241	24	21	28	25	1.99
43015710--43015892	79	2.3	80	82	1	226	25	21	28	24	1.99
43019828--43019888	29	2.1	29	81	9	70	50	6	14	27	1.68
43020411--43020553	41	3.5	41	84	0	187	20	23	24	32	1.98
43030709--43030747	20	2.0	20	90	10	62	15	23	5	56	1.59
43036610--43036707	40	2.5	40	84	0	124	40	25	17	16	1.90
43036651--43036748	40	2.5	39	85	6	117	38	23	20	17	1.93
43036796--43036893	39	2.5	39	83	3	124	25	20	26	27	1.99
43036787--43036893	41	2.7	41	80	2	128	25	21	26	27	1.99
43037228--43037264	14	2.6	14	95	0	65	21	0	29	48	1.50
43037312--43037345	14	2.3	15	90	5	52	35	0	29	35	1.58
43037510--43037584	21	3.5	21	74	5	53	20	0	42	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43037497--43037563	28	2.4	29	73	14	68	16	0	47	35	1.47
43037681--43037716	7	5.0	7	89	3	54	16	0	52	30	1.44
43038274--43038539	148	1.8	147	92	2	453	42	12	12	31	1.80
43039290--43039341	6	8.7	6	100	0	104	15	0	0	84	0.62
43040717--43040752	18	2.0	18	94	0	63	16	25	11	47	1.79
43041593--43041726	43	3.1	43	81	8	166	23	14	29	31	1.95
43041581--43041776	85	2.3	84	79	11	220	24	15	27	32	1.96
43042814--43042994	90	2.0	90	94	0	317	32	17	9	39	1.83
43043222--43043289	16	4.2	16	88	3	84	41	2	22	33	1.69
43043466--43043589	58	2.1	58	88	2	178	53	3	0	43	1.17
43049046--43049073	3	9.3	3	100	0	56	35	0	0	64	0.94
43061751--43061995	85	2.8	86	81	6	264	29	22	20	26	1.99
43061756--43062001	44	5.7	44	71	8	164	29	22	21	26	1.99
43063314--43063387	3	24.3	3	91	2	121	35	1	0	63	1.03
43071046--43071099	24	2.2	25	80	9	67	44	0	0	55	0.99
43086437--43086752	27	11.6	27	92	2	497	27	14	27	30	1.95
43086437--43086752	55	5.8	55	95	1	519	27	14	27	30	1.95
43086437--43086752	82	3.8	82	94	1	535	27	14	27	30	1.95
43092136--43092205	6	11.5	6	76	14	63	14	2	5	77	1.07
43092405--43092772	187	2.0	187	91	0	592	27	11	15	45	1.80
43102354--43102415	21	3.0	22	79	11	60	59	0	4	35	1.19
43102375--43102422	14	3.1	17	69	25	52	62	0	2	35	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43104266--43104358	25	3.7	25	86	0	96	24	26	20	27	1.99
43104301--43104361	25	2.4	25	94	0	104	24	24	21	29	1.99
43106953--43107022	9	7.2	9	73	19	52	7	8	4	80	1.03
43106989--43107027	20	1.9	21	85	15	55	10	5	0	84	0.76
43109833--43109867	17	2.0	18	88	5	54	25	11	0	62	1.28
43111637--43111793	32	4.9	32	86	0	208	38	19	19	21	1.93
43111969--43112022	24	2.2	24	90	0	81	48	24	7	20	1.75
43112068--43112324	81	3.2	81	74	4	232	21	20	18	39	1.93
43112067--43112324	27	9.6	27	77	7	175	22	20	18	39	1.93
43112256--43112339	27	3.1	27	87	3	98	19	19	20	41	1.90
43112220--43112339	54	2.2	54	83	2	143	17	18	20	43	1.88
43116045--43116116	27	2.7	27	78	6	85	29	18	19	33	1.95
43122140--43122173	12	2.8	12	86	4	50	29	0	38	32	1.58
43122642--43122703	27	2.3	27	77	0	70	33	17	14	33	1.90
43124057--43124121	22	2.7	25	75	18	66	23	12	43	21	1.86
43124081--43124131	22	2.3	22	93	0	84	19	11	47	21	1.81
43128286--43128342	21	2.7	21	94	0	105	29	8	19	42	1.81
43128632--43128656	8	3.1	8	100	0	50	28	0	24	48	1.52
43128632--43128664	15	2.1	16	88	5	50	30	0	24	45	1.53
43138284--43138999	357	2.0	358	95	0	1281	28	15	19	37	1.92
43143939--43143981	22	2.0	22	86	9	61	32	18	34	13	1.90
43148008--43148053	22	2.1	22	83	0	56	32	21	28	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43159554--43159596	5	8.4	5	84	5	59	18	4	2	74	1.10
43173177--43173225	20	2.5	20	78	15	57	59	6	22	12	1.55
43190077--43190137	26	2.3	26	91	5	97	40	9	19	29	1.84
43194300--43194522	40	5.6	40	86	3	236	24	21	27	26	1.99
43194375--43194557	79	2.3	80	82	1	226	25	20	27	25	1.99
43199716--43199745	13	2.3	13	94	0	51	50	3	0	46	1.18
43207374--43207511	68	2.0	68	100	0	276	27	7	23	41	1.81
43210458--43210486	12	2.3	13	94	5	51	20	6	6	65	1.40
43215035--43215166	50	2.6	50	79	4	149	25	22	28	22	1.99
43215407--43215454	20	2.5	19	77	12	53	54	2	22	20	1.55
43222578--43222761	50	3.6	50	81	4	170	27	19	28	24	1.99
43222634--43222813	50	3.6	49	81	3	166	27	21	27	22	1.99
43223822--43223885	30	2.1	30	97	0	119	35	14	7	42	1.74
43224114--43224306	50	3.7	50	79	5	190	24	26	22	26	2.00
43226807--43226853	22	2.1	22	84	4	58	6	8	4	80	1.00
43228803--43228850	18	2.7	17	77	6	51	20	4	6	68	1.28
43228899--43228979	3	27.0	3	100	0	162	33	33	0	33	1.58
43230281--43230499	45	4.9	45	86	1	287	36	19	20	23	1.95
43230281--43230538	135	1.9	135	80	3	304	37	18	20	22	1.94
43230465--43230584	45	2.6	47	81	2	127	44	19	20	15	1.87
43237412--43237868	47	9.6	47	91	4	639	32	8	29	29	1.87
43246242--43246268	4	6.8	4	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43255821--43255916	31	3.1	31	98	1	183	46	12	9	31	1.73
43258890--43259065	55	3.2	54	84	6	203	26	13	28	31	1.93
43258915--43259065	28	5.6	27	92	3	223	27	13	28	30	1.94
43266907--43267058	27	5.6	27	92	3	232	27	13	28	30	1.94
43266879--43267058	27	6.5	28	88	5	224	26	13	29	30	1.94
43266879--43267058	55	3.3	55	89	2	245	26	13	29	30	1.94
43269257--43269356	22	4.7	21	76	14	80	4	14	9	73	1.23
43269235--43269283	15	3.3	15	78	21	66	0	12	12	75	1.05
43269312--43269373	20	3.2	19	78	10	72	4	9	9	75	1.17
43269913--43270008	31	3.1	32	95	3	169	46	12	9	31	1.73
43271150--43271212	18	3.4	19	71	20	53	44	0	3	52	1.17
43272790--43272814	10	2.5	10	100	0	50	28	0	8	64	1.22
43280752--43281432	226	3.0	226	99	0	1328	32	21	20	25	1.98
43290279--43290348	6	12.0	6	83	11	76	65	1	2	30	1.15
43290300--43290367	6	10.9	7	86	10	71	64	1	7	26	1.28
43290287--43290357	37	1.9	37	88	2	108	64	2	5	26	1.29
43298968--43299628	339	1.9	341	84	5	874	35	15	19	29	1.93
43303393--43303430	8	4.6	8	81	18	51	34	0	2	63	1.09
43303397--43303449	25	2.2	25	83	10	65	37	0	3	58	1.16
43303393--43303452	25	2.4	25	83	10	61	36	0	3	60	1.14
43304324--43304354	3	10.3	3	100	0	62	67	0	32	0	0.91
43310072--43310196	51	2.4	52	85	6	175	26	15	30	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43312675--43312750	30	2.5	30	89	0	116	30	25	6	38	1.81
43312663--43312924	120	2.2	119	82	4	314	22	25	14	37	1.92
43312735--43312956	30	7.4	30	77	7	150	18	25	16	39	1.91
43318827--43318953	6	20.3	6	69	16	53	70	2	21	5	1.19
43318834--43318953	27	4.3	26	74	21	77	70	2	22	5	1.19
43318861--43318910	14	3.6	14	80	0	55	76	0	20	4	0.95
43318840--43318953	29	4.2	25	75	23	90	69	2	22	5	1.21
43318860--43318959	21	4.8	20	74	8	83	68	2	23	7	1.25
43322955--43323181	40	5.7	40	85	4	289	24	20	28	26	1.99
43322955--43323181	119	1.9	120	91	0	375	24	20	28	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199