genome.fa.s20.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  136  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39611834--39611880	23	2.1	23	84	7	62	51	12	4	31	1.59
39614203--39614253	13	3.9	13	94	0	84	74	1	7	15	1.13
39619522--39619581	22	2.7	23	73	19	63	66	6	0	26	1.16
39619531--39619564	4	8.0	4	90	9	50	73	2	0	23	0.97
39620963--39621001	18	2.2	18	85	0	51	12	23	2	61	1.43
39623330--39623389	22	2.7	23	73	19	63	66	6	0	26	1.16
39623339--39623372	4	8.0	4	90	9	50	73	2	0	23	0.97
39625247--39625306	18	3.4	17	79	9	57	6	18	3	71	1.22
39626231--39626265	14	2.5	14	95	0	61	20	8	0	71	1.11
39626307--39626353	12	3.9	12	88	8	69	14	6	10	68	1.38
39629647--39629696	26	1.9	26	92	8	84	68	6	8	18	1.36
39629704--39629729	13	2.0	13	100	0	52	69	7	7	15	1.35
39631982--39632035	23	2.2	25	78	15	60	62	3	22	11	1.43
39639602--39639635	11	3.0	11	87	8	50	76	8	2	11	1.12
39639603--39639678	13	5.8	13	75	11	66	73	3	6	15	1.19
39639614--39639677	29	2.2	29	83	5	76	73	3	7	15	1.19
39639653--39639732	30	2.6	30	73	9	81	67	7	13	11	1.41
39640605--39640639	18	1.9	18	88	11	54	57	0	20	22	1.41
39643745--39643805	11	5.0	11	75	15	50	70	3	8	18	1.26
39643735--39643816	37	2.2	36	85	8	103	73	4	7	14	1.22
39643794--39643836	22	2.0	22	85	0	59	74	6	11	6	1.21
39644729--39644763	18	1.9	18	88	11	54	57	0	20	22	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39655679--39655725	23	2.1	23	84	7	62	51	12	4	31	1.59
39661690--39661743	24	2.2	25	78	15	60	11	22	3	62	1.43
39663303--39663327	13	1.9	13	100	0	50	36	16	32	16	1.90
39665617--39665662	23	2.0	23	86	4	65	6	10	6	76	1.16
39673365--39673419	21	2.4	22	76	14	58	41	16	16	25	1.88
39681706--39681769	22	3.0	21	88	6	92	29	4	34	31	1.78
39685136--39685200	20	3.3	19	73	16	51	38	16	21	23	1.93
39691591--39691645	15	3.8	15	85	2	69	1	21	1	74	1.01
39695656--39695691	15	2.4	16	90	9	58	5	19	0	75	1.00
39695701--39695744	20	2.2	20	88	8	63	6	13	2	77	1.07
39697937--39697977	11	3.7	12	84	12	52	17	4	4	73	1.19
39698282--39698345	22	3.0	21	88	6	92	29	4	34	31	1.78
39703761--39703809	21	2.4	20	83	10	55	46	24	4	24	1.69
39715040--39715087	23	2.1	23	84	0	60	8	22	6	62	1.46
39715060--39715153	15	5.9	15	72	17	57	5	26	3	64	1.30
39715114--39715157	14	3.1	14	86	3	61	2	22	2	72	1.07
39717311--39717355	12	3.8	12	90	0	72	75	6	2	15	1.11
39717324--39717362	12	3.5	11	86	10	53	82	7	0	10	0.86
39717393--39717429	18	2.1	18	89	0	56	62	5	8	24	1.44
39725434--39725466	10	3.3	10	95	0	57	87	0	12	0	0.53
39725434--39725473	10	4.0	10	90	6	55	82	0	15	2	0.77
39726358--39726428	37	1.9	37	86	11	101	76	2	18	2	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39726368--39726417	6	8.2	6	83	14	50	76	2	20	2	0.99
39726478--39726508	12	2.6	12	100	0	62	45	12	16	25	1.83
39728654--39728750	30	3.2	30	72	2	97	29	25	14	29	1.95
39732980--39733017	20	1.9	19	94	5	67	31	15	28	23	1.96
39736720--39736767	16	3.5	13	76	17	53	72	4	6	16	1.20
39736771--39736810	17	2.4	17	87	8	55	72	7	15	5	1.24
39744925--39744968	22	1.9	23	86	9	63	18	2	13	65	1.36
39746934--39746971	10	3.8	10	83	13	51	28	31	18	21	1.97
39746933--39746970	20	1.9	20	94	0	67	28	34	18	18	1.95
39746934--39746994	20	3.0	20	83	9	63	29	27	14	27	1.95
39746944--39746990	10	4.6	10	80	15	51	31	27	14	25	1.95
39748293--39748330	13	2.6	15	88	12	53	81	5	7	5	0.98
39748407--39748441	13	2.8	13	86	4	54	68	5	8	17	1.35
39749510--39749615	48	2.2	47	85	9	135	59	1	24	14	1.45
39751161--39751198	10	3.8	10	83	13	51	28	31	18	21	1.97
39751160--39751197	20	1.9	20	94	0	67	28	34	18	18	1.95
39751161--39751221	20	3.0	20	83	9	63	29	27	14	27	1.95
39751171--39751217	10	4.6	10	80	15	51	31	27	14	25	1.95
39755723--39755760	10	3.8	10	83	13	51	28	31	18	21	1.97
39755722--39755759	20	1.9	20	94	0	67	28	34	18	18	1.95
39755723--39755783	20	3.0	20	83	9	63	29	27	14	27	1.95
39755733--39755779	10	4.6	10	80	15	51	31	27	14	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39757085--39757117	11	2.9	11	95	4	57	81	6	3	9	0.95
39757195--39757234	13	3.2	13	92	3	64	72	2	7	17	1.19
39757203--39757245	12	3.8	12	87	9	63	76	0	4	18	0.95
39757203--39757245	11	3.8	11	90	9	61	76	0	4	18	0.95
39759829--39759866	10	3.8	10	83	13	51	28	31	18	21	1.97
39759828--39759865	20	1.9	20	94	0	67	28	34	18	18	1.95
39759829--39759889	20	3.0	20	83	9	63	29	27	14	27	1.95
39759839--39759885	10	4.6	10	80	15	51	31	27	14	25	1.95
39760594--39760623	7	4.3	7	100	0	60	16	13	16	53	1.73
39768814--39768854	17	2.4	18	80	8	50	14	24	4	56	1.58
39768783--39768838	24	2.3	25	79	14	64	10	23	3	62	1.43
39771089--39771115	14	1.9	14	100	0	54	14	7	7	70	1.32
39774211--39774249	20	2.0	20	84	0	51	43	12	17	25	1.85
39777750--39777784	18	1.9	18	88	11	54	22	20	0	57	1.41
39778664--39778702	16	2.5	15	88	12	53	5	15	7	71	1.26
39778694--39778728	12	2.9	12	82	0	52	11	5	2	80	1.00
39778680--39778753	13	5.6	13	75	24	59	13	8	5	72	1.24
39778732--39778764	10	3.0	11	91	8	50	15	3	9	72	1.21
39780240--39780278	20	2.0	20	84	0	51	43	12	17	25	1.85
39789679--39789775	30	3.2	30	75	2	106	28	15	26	28	1.96
39796198--39796227	14	2.1	14	93	6	51	70	6	6	16	1.31
39798473--39798526	23	2.2	25	78	15	60	62	3	22	11	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39802878--39802931	20	2.7	20	82	0	63	24	20	18	37	1.94
39802878--39802951	30	2.5	30	86	8	98	21	20	18	39	1.93
39802878--39802942	20	3.2	20	71	16	53	23	21	16	38	1.93
39809532--39809575	22	2.0	22	90	0	70	31	4	36	27	1.77
39815997--39816043	20	2.3	20	81	0	58	23	12	34	29	1.92
39835552--39835652	52	1.9	52	95	0	184	32	21	18	26	1.97
39843407--39843507	52	1.9	52	95	0	184	32	21	18	26	1.97
39845285--39845456	79	2.2	79	82	3	211	24	21	28	25	1.99
39845232--39845454	40	5.6	39	80	8	200	25	21	27	25	1.99
39845312--39845489	79	2.2	80	81	2	198	24	21	28	24	1.99
39850699--39850749	20	2.5	20	83	0	66	29	11	31	27	1.92
39853341--39853369	13	2.2	13	100	0	58	79	0	6	13	0.93
39860651--39860702	22	2.4	22	93	0	86	25	3	44	26	1.71
39865988--39866034	23	2.1	23	84	7	62	51	12	4	31	1.59
39880402--39880446	20	2.2	20	85	14	58	28	0	13	57	1.36
39881362--39881435	23	3.2	23	81	7	80	35	32	2	29	1.72
39883283--39883337	27	2.0	27	86	10	76	29	5	10	54	1.57
39891743--39891782	18	2.2	18	86	4	53	12	27	0	60	1.33
39892911--39892957	12	3.8	12	91	2	67	14	2	6	76	1.08
39892925--39892961	12	3.0	13	88	7	51	10	5	13	70	1.32
39896370--39896419	12	4.0	12	87	12	66	74	2	8	16	1.15
39900669--39900726	26	2.2	25	81	6	62	77	1	6	13	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39900706--39900756	16	3.5	15	80	19	56	72	5	15	5	1.24
39906378--39906424	23	2.1	23	84	7	62	51	12	4	31	1.59
39909697--39909741	24	1.9	23	86	4	63	4	22	2	71	1.15
39911827--39911868	11	3.7	11	93	3	66	11	2	9	76	1.12
39911826--39911871	12	3.9	12	91	5	67	13	4	10	71	1.27
39912843--39912892	23	2.2	23	100	0	100	52	8	8	32	1.60
39914481--39914525	24	1.9	23	81	4	54	8	11	11	68	1.39
39916634--39916681	21	2.2	22	88	3	71	70	2	20	6	1.19
39924536--39924584	22	2.2	23	82	10	66	42	18	8	30	1.79
39929009--39929053	24	1.9	23	86	4	63	11	8	8	71	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199